view test-data/gffcompare_out2.stats @ 4:0f710191a66d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
author iuc
date Thu, 17 Oct 2019 03:01:26 -0400
parents 2bb86e2c417f
children f99dd58de04f
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# gffcompare v0.11.2 | Command line was:
#gffcompare -r ref_annotation -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
#

#= Summary for dataset: gffcompare_in1_gtf 
#     Query mRNAs :       5 in       5 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       1 in       1 loci  (0 multi-exon)
# Super-loci w/ reference transcripts:        1
#-----------------| Sensitivity | Precision  |
        Base level:    94.7     |    42.9    |
        Exon level:   100.0     |    40.0    |
  Transcript level:     0.0     |     0.0    |
       Locus level:     0.0     |     0.0    |

     Matching intron chains:       0
       Matching transcripts:       0
              Matching loci:       0

          Missed exons:       0/1	(  0.0%)
           Novel exons:       3/5	( 60.0%)
           Missed loci:       0/1	(  0.0%)
            Novel loci:       3/5	( 60.0%)

#= Summary for dataset: gffcompare_in2_gtf 
#     Query mRNAs :       4 in       4 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       1 in       1 loci  (0 multi-exon)
# Super-loci w/ reference transcripts:        1
#-----------------| Sensitivity | Precision  |
        Base level:    31.6     |    18.2    |
        Exon level:   100.0     |    25.0    |
  Transcript level:     0.0     |     0.0    |
       Locus level:     0.0     |     0.0    |

     Matching intron chains:       0
       Matching transcripts:       0
              Matching loci:       0

          Missed exons:       0/1	(  0.0%)
           Novel exons:       3/4	( 75.0%)
           Missed loci:       0/1	(  0.0%)
            Novel loci:       3/4	( 75.0%)

 Total union super-loci across all input datasets: 6 
  (0 multi-transcript, ~1.3 transcripts per locus)
8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)