Mercurial > repos > iuc > gffcompare
view test-data/gffcompare_out2.stats @ 4:0f710191a66d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 851f81495c875ac09d936537ffd2b32e6af2c8c5"
| author | iuc |
|---|---|
| date | Thu, 17 Oct 2019 03:01:26 -0400 |
| parents | 2bb86e2c417f |
| children | f99dd58de04f |
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# gffcompare v0.11.2 | Command line was: #gffcompare -r ref_annotation -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf # #= Summary for dataset: gffcompare_in1_gtf # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 1 in 1 loci (0 multi-exon) # Super-loci w/ reference transcripts: 1 #-----------------| Sensitivity | Precision | Base level: 94.7 | 42.9 | Exon level: 100.0 | 40.0 | Transcript level: 0.0 | 0.0 | Locus level: 0.0 | 0.0 | Matching intron chains: 0 Matching transcripts: 0 Matching loci: 0 Missed exons: 0/1 ( 0.0%) Novel exons: 3/5 ( 60.0%) Missed loci: 0/1 ( 0.0%) Novel loci: 3/5 ( 60.0%) #= Summary for dataset: gffcompare_in2_gtf # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 1 in 1 loci (0 multi-exon) # Super-loci w/ reference transcripts: 1 #-----------------| Sensitivity | Precision | Base level: 31.6 | 18.2 | Exon level: 100.0 | 25.0 | Transcript level: 0.0 | 0.0 | Locus level: 0.0 | 0.0 | Matching intron chains: 0 Matching transcripts: 0 Matching loci: 0 Missed exons: 0/1 ( 0.0%) Novel exons: 3/4 ( 75.0%) Missed loci: 0/1 ( 0.0%) Novel loci: 3/4 ( 75.0%) Total union super-loci across all input datasets: 6 (0 multi-transcript, ~1.3 transcripts per locus) 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)