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view test-data/gffcompare_out1.stats @ 2:f99d7825a501 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
author iuc
date Tue, 05 Feb 2019 15:51:44 -0500
parents 3c97c841a443
children 2bb86e2c417f
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# gffcompare v0.10.6 | Command line was:
#gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_3.dat -R -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
#

#= Summary for dataset: gffcompare_in1_gtf 
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       1 in       1 loci  (1 multi-exon)
# Super-loci w/ reference transcripts:        1
#-----------------| Sensitivity | Precision  |
        Base level:     2.2     |     2.3    |
        Exon level:     0.0     |     0.0    |
      Intron level:     0.0     |    -nan    |
Intron chain level:     0.0     |    -nan    |
  Transcript level:     0.0     |     0.0    |
       Locus level:     0.0     |     0.0    |

     Matching intron chains:       0
       Matching transcripts:       0
              Matching loci:       0

          Missed exons:       2/3	( 66.7%)
           Novel exons:      49/50	( 98.0%)
        Missed introns:       2/2	(100.0%)
           Missed loci:       0/1	(  0.0%)
            Novel loci:      49/50	( 98.0%)

#= Summary for dataset: gffcompare_in2_gtf 
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       0 in       0 loci  (0 multi-exon)

 Total union super-loci across all input datasets: 87 
  (0 multi-transcript, ~1.1 transcripts per locus)
100 out of 100 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)