Mercurial > repos > iuc > ggplot2_point

comparison ggplot_point.xml @ 14:5298e06f14f9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948
author iuc
date Mon, 30 Sep 2024 15:40:11 +0000
parents 3b12bf9b4b87
children
comparison
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13:3b12bf9b4b87 14:5298e06f14f9
1 <tool id="ggplot2_point" name="Scatterplot with ggplot2" version="@TOOL_VERSION@+galaxy1" profile="20.01"> 1 <tool id="ggplot2_point" name="Scatterplot with ggplot2" version="@TOOL_VERSION@+galaxy1" profile="20.01">
2 <expand macro="bio_tools"/>
3 <macros> 2 <macros>
4 <import>macros.xml</import> 3 <import>macros.xml</import>
5 <token name="@SIMPLE_GGLINE@">gg_line = geom_line(size=1, alpha=1, gg_factor)</token> 4 <token name="@SIMPLE_GGLINE@">gg_line = geom_line(size=1, alpha=1, gg_factor)</token>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="2.1.0">r-svglite</requirement> 8 <requirement type="package" version="2.1.0">r-svglite</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 cat '$script' && 11 cat '$script' &&
202 </inputs> 202 </inputs>
203 <outputs> 203 <outputs>
204 <expand macro="additional_output" /> 204 <expand macro="additional_output" />
205 </outputs> 205 </outputs>
206 <tests> 206 <tests>
207 <test> 207 <test expect_num_outputs="2">
208 <param name="input1" value="mtcars.txt" ftype="tabular" /> 208 <param name="input1" value="mtcars.txt" ftype="tabular" />
209 <param name="additional_output_format" value="pdf" /> 209 <param name="additional_output_format" value="pdf" />
210 <output name="output2" file="ggplot_point_result1.pdf" compare="sim_size" /> 210 <output name="output2" file="ggplot_point_result1.pdf" compare="sim_size" />
211 </test> 211 </test>
212 <!-- Test text options--> 212 <!-- Test text options-->
213 <test> 213 <test expect_num_outputs="2">
214 <param name="input1" value="mtcars.txt" ftype="tabular" /> 214 <param name="input1" value="mtcars.txt" ftype="tabular" />
215 <section name="adv"> 215 <section name="adv">
216 <conditional name="type_conditional"> 216 <conditional name="type_conditional">
217 <param name="type_options" value="points"/> 217 <param name="type_options" value="points"/>
218 <conditional name="points"> 218 <conditional name="points">
226 </section> 226 </section>
227 <param name="additional_output_format" value="pdf" /> 227 <param name="additional_output_format" value="pdf" />
228 <output name="output2" file="ggplot_point_result2.pdf" compare="sim_size" /> 228 <output name="output2" file="ggplot_point_result2.pdf" compare="sim_size" />
229 </test> 229 </test>
230 <!-- Test lines option --> 230 <!-- Test lines option -->
231 <test> 231 <test expect_num_outputs="2">
232 <param name="input1" value="mtcars.txt" ftype="tabular" /> 232 <param name="input1" value="mtcars.txt" ftype="tabular" />
233 <section name="adv"> 233 <section name="adv">
234 <conditional name="type_conditional"> 234 <conditional name="type_conditional">
235 <param name="type_options" value="lines"/> 235 <param name="type_options" value="lines"/>
236 </conditional> 236 </conditional>
237 </section> 237 </section>
238 <param name="additional_output_format" value="pdf" /> 238 <param name="additional_output_format" value="pdf" />
239 <output name="output2" file="ggplot_line_result1.pdf" compare="sim_size" /> 239 <output name="output2" file="ggplot_line_result1.pdf" compare="sim_size" />
240 </test> 240 </test>
241 <!-- Test defined point options options--> 241 <!-- Test defined point options options-->
242 <test> 242 <test expect_num_outputs="2">
243 <param name="input1" value="mtcars.txt" ftype="tabular" /> 243 <param name="input1" value="mtcars.txt" ftype="tabular" />
244 <section name="adv"> 244 <section name="adv">
245 <conditional name="type_conditional"> 245 <conditional name="type_conditional">
246 <param name="type_options" value="points"/> 246 <param name="type_options" value="points"/>
247 <conditional name="points"> 247 <conditional name="points">
256 <param name="axis_customization" value="defined"/> 256 <param name="axis_customization" value="defined"/>
257 <param name="color" value="red"/> 257 <param name="color" value="red"/>
258 </conditional> 258 </conditional>
259 </section> 259 </section>
260 <param name="additional_output_format" value="pdf" /> 260 <param name="additional_output_format" value="pdf" />
261 <output name="output2" file="ggplot_point_result3.pdf" compare="sim_size" /> 261 <output name="output2" file="ggplot_point_result3.pdf" ftype="pdf" compare="sim_size" />
262 </test> 262 </test>
263 </tests> 263 </tests>
264 <help><![CDATA[ 264 <help><![CDATA[
265 This tool will generate a scatterplot representing data from two groups/conditions. 265 This tool will generate a scatterplot representing data from two groups/conditions.
266 266