Mercurial > repos > iuc > ggplot2_point

diff ggplot_point.xml @ 11:d0fc8b746d57 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 075aa3ab0ebc5eef83aac753a2cac7dffe2c6b0c
author iuc
date Fri, 02 Dec 2022 09:35:49 +0000
parents 299307abd804
children 5fe1dc76176e
line wrap: on
line diff
--- a/ggplot_point.xml	Thu Nov 24 20:23:57 2022 +0000
+++ b/ggplot_point.xml	Fri Dec 02 09:35:49 2022 +0000
@@ -2,6 +2,7 @@
     <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
+        <token name="@SIMPLE_GGLINE@">gg_line = geom_line(size=1, alpha=1, gg_factor)</token>
     </macros>
     <expand macro="requirements">
         <requirement type="package" version="2.0.0">r-svglite</requirement>
@@ -34,9 +35,11 @@
      gg_facet = facet_wrap( ~ factor)
      gg_factor = NULL
      color_scale = NULL
-     #if $adv.type_conditional.points.pointoptions == "default"
+     #if $adv.type_conditional.type_options == "lines":
+        @SIMPLE_GGLINE@
+     #elif $adv.type_conditional.points.pointoptions == "default"
         gg_point = geom_point(size=1, alpha=1, gg_factor)
-        gg_line = geom_line(size=1, alpha=1, gg_factor)
+        @SIMPLE_GGLINE@
      #else
         gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape'))
         gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape'))
@@ -48,9 +51,11 @@
     gg_facet = NULL
     gg_factor = aes(colour=factor(factor))
 
-    #if $adv.type_conditional.points.pointoptions == "default"
+    #if $adv.type_conditional.type_options == "lines":
+        @SIMPLE_GGLINE@
+    #elif $adv.type_conditional.points.pointoptions == "default"
         gg_point = geom_point(size=1, alpha=1, gg_factor)
-        gg_line = geom_line(size=1, alpha=1, gg_factor)
+        @SIMPLE_GGLINE@
     #else
         gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, gg_factor)
         gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, gg_factor)
@@ -68,9 +73,11 @@
     gg_factor = NULL
     color_scale = NULL
 
-    #if $adv.type_conditional.points.pointoptions == "default"
+    #if $adv.type_conditional.type_options == "lines":
+        @SIMPLE_GGLINE@
+    #elif $adv.type_conditional.points.pointoptions == "default"
         gg_point = geom_point(size=1, alpha=1, gg_factor)
-        gg_line = geom_line(size=1, alpha=1, gg_factor)
+        @SIMPLE_GGLINE@
     #else
         gg_point = geom_point(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape'))
         gg_line = geom_line(size=$adv.type_conditional.points.size, alpha=$adv.type_conditional.points.alpha, colour='$adv.type_conditional.points.pointcolor', shape=as.numeric('$adv.type_conditional.points.shape'))
@@ -220,6 +227,17 @@
             <param name="additional_output_format" value="pdf" />
             <output name="output2" file="ggplot_point_result2.pdf" compare="sim_size" />
         </test>
+        <!-- Test lines option -->
+        <test>
+            <param name="input1" value="mtcars.txt" ftype="tabular" />
+            <section name="adv">
+                <conditional name="type_conditional">
+                    <param name="type_options" value="lines"/>
+                </conditional>
+            </section>
+            <param name="additional_output_format" value="pdf" />
+            <output name="output2" file="ggplot_line_result1.pdf" compare="sim_size" />
+        </test>
          <!-- Test defined point options options-->
         <test>
             <param name="input1" value="mtcars.txt" ftype="tabular" />