Mercurial > repos > iuc > gprofiler_convert

annotate macros.xml @ 1:8ee097f1763d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit 4d4576623a85b58137f9e8c5a7747cb2f484c8b6"
author iuc
date Mon, 18 Nov 2019 17:54:25 -0500
parents e219aca2f9fc
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
2 <macros>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
3 <xml name="requirements">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
4 <requirements>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
5 <requirement type="package" version="@TOOL_VERSION@">r-gprofiler2</requirement>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
6 <requirement type="package" version="2.7.3">pandoc</requirement>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
7 <yield />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
8 </requirements>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
9 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
10
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
11 <token name="@TOOL_VERSION@">0.1.7</token>
1
8ee097f1763d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit 4d4576623a85b58137f9e8c5a7747cb2f484c8b6"
iuc
parents: 0
diff changeset
12 <token name="@VERSION@">@TOOL_VERSION@+galaxy11</token>
0
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
13
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
14 <xml name="version_command">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
15 <version_command>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
16 Rscript -e 'library(gprofiler2); packageVersion("gprofiler2")' | sed 's/\[1\] //' | sed 's/.//;s/.$//'
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
17 </version_command>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
18 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
19
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
20 <token name="@REFERENCES@"><![CDATA[
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
21
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
22 This tool is part of the `g:Profiler`_ from the `University of Tartu`_.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
23
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
24 .. _g:Profiler: https://biit.cs.ut.ee/gprofiler/
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
25 .. _University of Tartu: https://ut.ee/en/
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
26
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
27 **Resources**
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
28 * `A complete list of suppоrted organism IDs`_
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
29 * `A complete list of supported namespaces`_
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
30
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
31 .. _A complete list of suppоrted organism IDs: https://biit.cs.ut.ee/gprofiler/page/organism-list
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
32 .. _A complete list of supported namespaces: https://biit.cs.ut.ee/gprofiler/page/namespaces-list
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
33
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
34 **gprofiler2 R tool**
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
35 * https://CRAN.R-project.org/package=gprofiler2 — as CRAN package.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
36 * https://anaconda.org/conda-forge/r-gprofiler2 — as conda-forge package.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
37
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
38 **Contact**
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
39 * Contact us at biit.support@ut.ee for further help.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
40
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
41 .. class:: warningmark
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
42
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
43 By default the tool makes requests to APIs of the latest g:Profiler instance with the most recent data release.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
44 Please, use ’Tool Settings → Base URL’ to modify it in case you want to make use of older data versions. Also, if the
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
45 results should be pinned for reproducibility, we suggest to modify the base url to the last archived data version.
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
46
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
47 ]]></token>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
48
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
49 <xml name="input">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
50 <param name="input" type="data" format="txt" label="Input is whitespace-separated list of genes, proteins, probes, term IDs or chromosomal regions." />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
51 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
52 <xml name="organism" token_name="organism" token_label="Organism"
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
53 token_hsapiens_selected="true" token_mmusculus_selected="false">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
54 <conditional name="@NAME@">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
55 <param name="select_input_type" type="select" label="@LABEL@">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
56 <option value="select">Common organisms</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
57 <option value="input">Enter organism ID</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
58 </param>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
59 <when value="select">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
60 <param name="organism" type="select" label="Common organisms">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
61 <option value="athaliana">Arabidopsis thaliana</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
62 <option value="afumigatusa1163">Aspergillus fumigatus A1163</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
63 <option value="btaurus">Bos taurus (Cow)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
64 <option value="celegans">Caenorhabditis elegans</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
65 <option value="cfamiliaris">Canis lupus familiaris (Dog)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
66 <option value="drerio">Danio rerio (Zebrafish)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
67 <option value="dmelanogaster">Drosophila melanogaster</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
68 <option value="ggallus">Gallus gallus (Chicken)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
69 <option value="hsapiens" selected="@HSAPIENS_SELECTED@">Homo sapiens (Human)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
70 <option value="mmusculus" selected="@MMUSCULUS_SELECTED@">Mus musculus (Mouse)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
71 <option value="osativa">Oryza sativa Japonica Group</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
72 <option value="pteres">Pyrenophora teres f. teres 0-1 (Pyrenophora teres)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
73 <option value="rnorvegicus">Rattus norvegicus (Rat)</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
74 <option value="scerevisiae">Saccharomyces cerevisiae</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
75 <option value="zmays">Zea mays</option>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
76 </param>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
77 </when>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
78 <when value="input">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
79 <param name="organism" type="text" value="hsapiens" label="Enter organism ID" help="Organism IDs are constructed by concatenating the first letter of the generic name and the specific name. E.g., human — Homo sapiens — ’hsapiens’, mouse — Mus musculus — ’mmusculus’, thale cress — Arabidopsis thaliana — ’athaliana’. Check the help section below for the complete list of supported organism IDs." />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
80 </when>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
81 </conditional>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
82 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
83
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
84 <xml name="filter_na">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
85 <param name="filter_na" type="boolean" checked="false" truevalue="T" falsevalue="F" label="Filter N/A" help="Whether to filter out results without a corresponding target name." />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
86 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
87
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
88 <xml name="tool_settings">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
89 <section name="tool_settings" title="Tool settings" expanded="false">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
90 <param type="text" name="base_url" label="Base URL" optional="true" help="Useful for overriding the default URL (http://biit.cs.ut.ee/gprofiler) with the beta (https://biit.cs.ut.ee/gprofiler_beta) or a compatible archived version (available starting from the version e94_eg41_p11, e.g. https://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11)." value="http://biit.cs.ut.ee/gprofiler" />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
91 <yield />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
92 </section>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
93 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
94
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
95 <xml name="citations">
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
96 <citations>
1
8ee097f1763d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit 4d4576623a85b58137f9e8c5a7747cb2f484c8b6"
iuc
parents: 0
diff changeset
97 <citation type="doi">10.1093/nar/gkz369</citation>
0
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
98 <yield />
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
99 </citations>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
100 </xml>
e219aca2f9fc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
iuc
parents:
diff changeset
101 </macros>