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comparison graphlan.xml @ 2:6e8eb0c0d91f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2/ commit fb23555b3087ca4022f0d186dfea40c2407ca211
author iuc
date Fri, 09 Feb 2024 21:29:49 +0000
parents a490b70e46fc
children
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1:a490b70e46fc 2:6e8eb0c0d91f
1 <tool id="graphlan" name="GraPhlAn" version="@WRAPPER_VERSION@"> 1 <tool id="graphlan" name="GraPhlAn" version="@WRAPPER_VERSION@">
2 <description>to produce graphical output of an input tree</description> 2 <description>to produce graphical output of an input tree</description>
3 <macros> 3 <macros>
4 <import>graphlan_macros.xml</import> 4 <import>graphlan_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <stdio> 8 <stdio>
8 <regex match="Warning" 9 <regex match="Warning"
9 source="stderr" 10 source="stderr"
10 level="warning" 11 level="warning"
73 <data format="svg" name="svg_output_image" label="${tool.name} on ${on_string}: SVG"> 74 <data format="svg" name="svg_output_image" label="${tool.name} on ${on_string}: SVG">
74 <filter>image_format['format']=="svg"</filter> 75 <filter>image_format['format']=="svg"</filter>
75 </data> 76 </data>
76 </outputs> 77 </outputs>
77 <tests> 78 <tests>
78 <test> 79 <test expect_num_outputs="1">
79 <param name="input_tree" value="intermediary_tree"/> 80 <param name="input_tree" value="intermediary_tree"/>
80 <param name="format" value="png"/> 81 <param name="format" value="png"/>
81 <param name="dpi" value="100"/> 82 <param name="dpi" value="100"/>
82 <param name="size" value="7"/> 83 <param name="size" value="7"/>
83 <param name="pad" value="2"/> 84 <param name="pad" value="2"/>
87 <help><![CDATA[ 88 <help><![CDATA[
88 **What it does** 89 **What it does**
89 90
90 GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation. 91 GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
91 92
92 For more information, check the `user manual <https://bitbucket.org/nsegata/graphlan/overview>`_. 93 For more information, check the `user manual <https://github.com/biobakery/graphlan>`_.
93 94
94 ]]></help> 95 ]]></help>
95 <expand macro="citations"/> 96 <expand macro="citations"/>
96 </tool> 97 </tool>