Mercurial > repos > iuc > gtdbtk_classify_wf

comparison gtdbtk_classify_wf.xml @ 10:4d9445dff47b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 6525c2141db269ee993dc79051525f97d3ecbab4
author iuc
date Sat, 28 Sep 2024 16:26:12 +0000
parents 5c7ba3d85a01
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9:5c7ba3d85a01 10:4d9445dff47b
37 ]]></command> 37 ]]></command>
38 <inputs> 38 <inputs>
39 <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/> 39 <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/>
40 <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk requires GTDB version 207 or 214. Please contact your service administrator if this version is not available to select."> 40 <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk requires GTDB version 207 or 214. Please contact your service administrator if this version is not available to select.">
41 <options from_data_table="gtdbtk_database_versioned"> 41 <options from_data_table="gtdbtk_database_versioned">
42 <filter type="regexp" column="version" value="^2(07|14)$"/> 42 <filter type="regexp" column="version" value="^220$"/>
43 <validator type="no_options" message="No locally cached GTDB-Tk database is available"/> 43 <validator type="no_options" message="No locally cached GTDB-Tk database is available"/>
44 </options> 44 </options>
45 </param> 45 </param>
46 <section name="advanced" title="Advanced options"> 46 <section name="advanced" title="Advanced options">
47 <param argument="--min_perc_aa" type="integer" min="0" max="100" value="10" label="Exclude genomes that do not have at least this percentage of AA in the MSA" help="Inclusive bound"/> 47 <param argument="--min_perc_aa" type="integer" min="0" max="100" value="10" label="Exclude genomes that do not have at least this percentage of AA in the MSA" help="Inclusive bound"/>