Mercurial > repos > iuc > gtdbtk_classify_wf

diff gtdbtk_classify_wf.xml @ 6:a09c8c901603 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 85683b4edaf9ec44550ff0de861023f794bf35f2
author iuc
date Fri, 13 Sep 2024 11:15:36 +0000
parents a68b985913ab
children b907a3c0434f
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--- a/gtdbtk_classify_wf.xml	Fri Mar 08 11:35:13 2024 +0000
+++ b/gtdbtk_classify_wf.xml	Fri Sep 13 11:15:36 2024 +0000
@@ -38,7 +38,8 @@
     <inputs>
         <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/>
         <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk required GTDB version R207_v2. Please contact your service administrator if this version is not available to select.">
-            <options from_data_table="gtdbtk_database">
+            <options from_data_table="gtdbtk_database_versioned">
+                <filter type="regexp" column="3" value="^v2(07|14)$"/>
                 <validator type="no_options" message="No locally cached GTDB-Tk database is available"/>
             </options>
         </param>
@@ -125,7 +126,7 @@
         <!-- GTDB-Tk databases are far too large to test currently -->
         <test expect_failure="true">
             <param name="input" value="genome_1.fna.gz" ftype="fasta.gz"/>
-            <param name="gtdbtk_db" value="gtdbtk202"/>
+            <param name="gtdbtk_db" value="gtdbtk214"/>
             <assert_stderr>
                 <has_text text="Fatal error: Exit code 1"/>
             </assert_stderr>