Mercurial > repos > iuc > gtftobed12

annotate test-data/gtf2bed_test.gtf @ 2:b026dae67fba draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit 2f9e5a51a632217e4966aa3b8e9d2b88a09a36e3"
author iuc
date Thu, 20 Feb 2020 13:45:34 -0500
parents 75a14cc16d4d
children
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75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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1 #!genome-build GRCh38.p2
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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2 #!genome-version GRCh38
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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3 #!genome-date 2013-12
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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4 #!genome-build-accession NCBI:GCA_000001405.17
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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5 #!genebuild-last-updated 2015-01
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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6 1 havana gene 11869 14409 . + . gene_id "ENSG00000223972"; gene_version "5"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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7 1 havana transcript 11869 14409 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000456328"; transcript_version "2"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; transcript_biotype "processed_transcript"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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8 1 havana exon 11869 12227 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000456328"; transcript_version "2"; exon_number "1"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00002234944"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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9 1 havana exon 12613 12721 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000456328"; transcript_version "2"; exon_number "2"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003582793"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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10 1 havana exon 13221 14409 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000456328"; transcript_version "2"; exon_number "3"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-002"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00002312635"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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11 1 havana transcript 12010 13670 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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12 1 havana exon 12010 12057 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "1"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001948541"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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13 1 havana exon 12179 12227 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "2"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001671638"; exon_version "2"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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14 1 havana exon 12613 12697 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "3"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001758273"; exon_version "2"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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15 1 havana exon 12975 13052 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "4"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001799933"; exon_version "2"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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16 1 havana exon 13221 13374 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "5"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001746346"; exon_version "2"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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17 1 havana exon 13453 13670 . + . gene_id "ENSG00000223972"; gene_version "5"; transcript_id "ENST00000450305"; transcript_version "2"; exon_number "6"; gene_name "DDX11L1"; gene_source "havana"; gene_biotype "transcribed_unprocessed_pseudogene"; transcript_name "DDX11L1-001"; transcript_source "havana"; transcript_biotype "transcribed_unprocessed_pseudogene"; exon_id "ENSE00001863096"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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18 1 havana gene 14404 29570 . - . gene_id "ENSG00000227232"; gene_version "5"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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19 1 havana transcript 14404 29570 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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20 1 havana exon 29534 29570 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "1"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00001890219"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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21 1 havana exon 24738 24891 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "2"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003507205"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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22 1 havana exon 18268 18366 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "3"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003477500"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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23 1 havana exon 17915 18061 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "4"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003565697"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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24 1 havana exon 17606 17742 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "5"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003475637"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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25 1 havana exon 17233 17368 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "6"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003502542"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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26 1 havana exon 16858 17055 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "7"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003553898"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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27 1 havana exon 16607 16765 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "8"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003621279"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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28 1 havana exon 15796 15947 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "9"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00002030414"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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29 1 havana exon 15005 15038 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "10"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00001935574"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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30 1 havana exon 14404 14501 . - . gene_id "ENSG00000227232"; gene_version "5"; transcript_id "ENST00000488147"; transcript_version "1"; exon_number "11"; gene_name "WASH7P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "WASH7P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00001843071"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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31 1 ensembl gene 17369 17436 . - . gene_id "ENSG00000278267"; gene_version "1"; gene_name "MIR6859-1"; gene_source "ensembl"; gene_biotype "miRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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32 1 ensembl transcript 17369 17436 . - . gene_id "ENSG00000278267"; gene_version "1"; transcript_id "ENST00000619216"; transcript_version "1"; gene_name "MIR6859-1"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "MIR6859-1-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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33 1 ensembl exon 17369 17436 . - . gene_id "ENSG00000278267"; gene_version "1"; transcript_id "ENST00000619216"; transcript_version "1"; exon_number "1"; gene_name "MIR6859-1"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "MIR6859-1-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; exon_id "ENSE00003746039"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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34 1 havana gene 29554 31109 . + . gene_id "ENSG00000243485"; gene_version "3"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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35 1 havana transcript 29554 31097 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000473358"; transcript_version "1"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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36 1 havana exon 29554 30039 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000473358"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001947070"; exon_version "1"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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37 1 havana exon 30564 30667 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000473358"; transcript_version "1"; exon_number "2"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001922571"; exon_version "1"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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38 1 havana exon 30976 31097 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000473358"; transcript_version "1"; exon_number "3"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001827679"; exon_version "1"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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39 1 havana transcript 30267 31109 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000469289"; transcript_version "1"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-002"; transcript_source "havana"; transcript_biotype "lincRNA"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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40 1 havana exon 30267 30667 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000469289"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001841699"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
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parents:
diff changeset
41 1 havana exon 30976 31109 . + . gene_id "ENSG00000243485"; gene_version "3"; transcript_id "ENST00000469289"; transcript_version "1"; exon_number "2"; gene_name "RP11-34P13.3"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.3-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001890064"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
42 1 ensembl gene 30366 30503 . + . gene_id "ENSG00000274890"; gene_version "1"; gene_name "MIR1302-2"; gene_source "ensembl"; gene_biotype "miRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
43 1 ensembl transcript 30366 30503 . + . gene_id "ENSG00000274890"; gene_version "1"; transcript_id "ENST00000607096"; transcript_version "1"; gene_name "MIR1302-2"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "MIR1302-2-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
44 1 ensembl exon 30366 30503 . + . gene_id "ENSG00000274890"; gene_version "1"; transcript_id "ENST00000607096"; transcript_version "1"; exon_number "1"; gene_name "MIR1302-2"; gene_source "ensembl"; gene_biotype "miRNA"; transcript_name "MIR1302-2-201"; transcript_source "ensembl"; transcript_biotype "miRNA"; exon_id "ENSE00003695741"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
45 1 havana gene 34554 36081 . - . gene_id "ENSG00000237613"; gene_version "2"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
46 1 havana transcript 34554 36081 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000417324"; transcript_version "1"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
47 1 havana exon 35721 36081 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000417324"; transcript_version "1"; exon_number "1"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001656588"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
48 1 havana exon 35277 35481 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000417324"; transcript_version "1"; exon_number "2"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001669267"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
49 1 havana exon 34554 35174 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000417324"; transcript_version "1"; exon_number "3"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001727627"; exon_version "1"; tag "basic"; transcript_support_level "1";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
50 1 havana transcript 35245 36073 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000461467"; transcript_version "1"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; transcript_biotype "lincRNA"; transcript_support_level "3";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
51 1 havana exon 35721 36073 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000461467"; transcript_version "1"; exon_number "1"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001618781"; exon_version "2"; transcript_support_level "3";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
52 1 havana exon 35245 35481 . - . gene_id "ENSG00000237613"; gene_version "2"; transcript_id "ENST00000461467"; transcript_version "1"; exon_number "2"; gene_name "FAM138A"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "FAM138A-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001874421"; exon_version "1"; transcript_support_level "3";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
53 1 havana gene 52473 53312 . + . gene_id "ENSG00000268020"; gene_version "3"; gene_name "OR4G4P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
54 1 havana transcript 52473 53312 . + . gene_id "ENSG00000268020"; gene_version "3"; transcript_id "ENST00000606857"; transcript_version "1"; gene_name "OR4G4P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "OR4G4P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
55 1 havana exon 52473 53312 . + . gene_id "ENSG00000268020"; gene_version "3"; transcript_id "ENST00000606857"; transcript_version "1"; exon_number "1"; gene_name "OR4G4P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "OR4G4P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00003698237"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
56 1 havana gene 62948 63887 . + . gene_id "ENSG00000240361"; gene_version "1"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
57 1 havana transcript 62948 63887 . + . gene_id "ENSG00000240361"; gene_version "1"; transcript_id "ENST00000492842"; transcript_version "1"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "OR4G11P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
58 1 havana exon 62948 63887 . + . gene_id "ENSG00000240361"; gene_version "1"; transcript_id "ENST00000492842"; transcript_version "1"; exon_number "1"; gene_name "OR4G11P"; gene_source "havana"; gene_biotype "unprocessed_pseudogene"; transcript_name "OR4G11P-001"; transcript_source "havana"; transcript_biotype "unprocessed_pseudogene"; exon_id "ENSE00001830178"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
59 1 ensembl_havana gene 69091 70008 . + . gene_id "ENSG00000186092"; gene_version "4"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
60 1 ensembl_havana transcript 69091 70008 . + . gene_id "ENSG00000186092"; gene_version "4"; transcript_id "ENST00000335137"; transcript_version "3"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS30547"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
61 1 ensembl_havana exon 69091 70008 . + . gene_id "ENSG00000186092"; gene_version "4"; transcript_id "ENST00000335137"; transcript_version "3"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS30547"; exon_id "ENSE00002319515"; exon_version "1"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
62 1 ensembl_havana CDS 69091 70005 . + 0 gene_id "ENSG00000186092"; gene_version "4"; transcript_id "ENST00000335137"; transcript_version "3"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS30547"; protein_id "ENSP00000334393"; protein_version "3"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
63 1 ensembl_havana start_codon 69091 69093 . + 0 gene_id "ENSG00000186092"; gene_version "4"; transcript_id "ENST00000335137"; transcript_version "3"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS30547"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
64 1 ensembl_havana stop_codon 70006 70008 . + 0 gene_id "ENSG00000186092"; gene_version "4"; transcript_id "ENST00000335137"; transcript_version "3"; exon_number "1"; gene_name "OR4F5"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "OR4F5-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS30547"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
65 1 ensembl_havana gene 89295 133723 . - . gene_id "ENSG00000238009"; gene_version "5"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
66 1 havana transcript 89295 120932 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000466430"; transcript_version "4"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
67 1 havana exon 120775 120932 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000466430"; transcript_version "4"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001606755"; exon_version "2"; tag "basic"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
68 1 havana exon 112700 112804 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000466430"; transcript_version "4"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001957285"; exon_version "1"; tag "basic"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
69 1 havana exon 92091 92240 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000466430"; transcript_version "4"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001944529"; exon_version "1"; tag "basic"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
70 1 havana exon 89295 91629 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000466430"; transcript_version "4"; exon_number "4"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001846804"; exon_version "1"; tag "basic"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
71 1 havana transcript 92230 129217 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000477740"; transcript_version "4"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; transcript_biotype "lincRNA"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
72 1 havana exon 129055 129217 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000477740"; transcript_version "4"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001919246"; exon_version "1"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
73 1 havana exon 120721 120932 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000477740"; transcript_version "4"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001171005"; exon_version "3"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
74 1 havana exon 112700 112804 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000477740"; transcript_version "4"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001957285"; exon_version "1"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
75 1 havana exon 92230 92240 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000477740"; transcript_version "4"; exon_number "4"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-003"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001896976"; exon_version "1"; transcript_support_level "5 (assigned to previous version 3)";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
76 1 havana transcript 110953 129173 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000471248"; transcript_version "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; transcript_biotype "lincRNA"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
77 1 havana exon 129055 129173 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000471248"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001934975"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
78 1 havana exon 112700 112804 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000471248"; transcript_version "1"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001957285"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
79 1 havana exon 110953 111357 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000471248"; transcript_version "1"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-002"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001879696"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
80 1 ensembl transcript 120725 133723 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000610542"; transcript_version "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-201"; transcript_source "ensembl"; transcript_biotype "lincRNA"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
81 1 ensembl exon 133374 133723 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000610542"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-201"; transcript_source "ensembl"; transcript_biotype "lincRNA"; exon_id "ENSE00003748456"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
82 1 ensembl exon 129055 129223 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000610542"; transcript_version "1"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-201"; transcript_source "ensembl"; transcript_biotype "lincRNA"; exon_id "ENSE00003734824"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
83 1 ensembl exon 120874 120932 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000610542"; transcript_version "1"; exon_number "3"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-201"; transcript_source "ensembl"; transcript_biotype "lincRNA"; exon_id "ENSE00003740919"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
84 1 ensembl exon 120725 120869 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000610542"; transcript_version "1"; exon_number "4"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-201"; transcript_source "ensembl"; transcript_biotype "lincRNA"; exon_id "ENSE00003749543"; exon_version "1"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
85 1 havana transcript 129081 133566 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000453576"; transcript_version "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; transcript_biotype "lincRNA"; transcript_support_level "2";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
86 1 havana exon 133374 133566 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000453576"; transcript_version "2"; exon_number "1"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001737600"; exon_version "2"; transcript_support_level "2";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
87 1 havana exon 129081 129223 . - . gene_id "ENSG00000238009"; gene_version "5"; transcript_id "ENST00000453576"; transcript_version "2"; exon_number "2"; gene_name "RP11-34P13.7"; gene_source "ensembl_havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.7-004"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001827073"; exon_version "1"; transcript_support_level "2";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
88 1 havana gene 89551 91105 . - . gene_id "ENSG00000239945"; gene_version "1"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
89 1 havana transcript 89551 91105 . - . gene_id "ENSG00000239945"; gene_version "1"; transcript_id "ENST00000495576"; transcript_version "1"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; transcript_biotype "lincRNA"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
90 1 havana exon 90287 91105 . - . gene_id "ENSG00000239945"; gene_version "1"; transcript_id "ENST00000495576"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001907785"; exon_version "1"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
91 1 havana exon 89551 90050 . - . gene_id "ENSG00000239945"; gene_version "1"; transcript_id "ENST00000495576"; transcript_version "1"; exon_number "2"; gene_name "RP11-34P13.8"; gene_source "havana"; gene_biotype "lincRNA"; transcript_name "RP11-34P13.8-001"; transcript_source "havana"; transcript_biotype "lincRNA"; exon_id "ENSE00001927725"; exon_version "1"; tag "basic"; transcript_support_level "5";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
92 1 havana gene 131025 134836 . + . gene_id "ENSG00000233750"; gene_version "3"; gene_name "CICP27"; gene_source "havana"; gene_biotype "processed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
93 1 havana transcript 131025 134836 . + . gene_id "ENSG00000233750"; gene_version "3"; transcript_id "ENST00000442987"; transcript_version "3"; gene_name "CICP27"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "CICP27-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
94 1 havana exon 131025 134836 . + . gene_id "ENSG00000233750"; gene_version "3"; transcript_id "ENST00000442987"; transcript_version "3"; exon_number "1"; gene_name "CICP27"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "CICP27-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; exon_id "ENSE00001625118"; exon_version "3"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
95 1 havana gene 135141 135895 . - . gene_id "ENSG00000268903"; gene_version "1"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "processed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
96 1 havana transcript 135141 135895 . - . gene_id "ENSG00000268903"; gene_version "1"; transcript_id "ENST00000494149"; transcript_version "2"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "RP11-34P13.15-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
97 1 havana exon 135141 135895 . - . gene_id "ENSG00000268903"; gene_version "1"; transcript_id "ENST00000494149"; transcript_version "2"; exon_number "1"; gene_name "RP11-34P13.15"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "RP11-34P13.15-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; exon_id "ENSE00001879101"; exon_version "2"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
98 1 havana gene 137682 137965 . - . gene_id "ENSG00000269981"; gene_version "1"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "processed_pseudogene";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
99 1 havana transcript 137682 137965 . - . gene_id "ENSG00000269981"; gene_version "1"; transcript_id "ENST00000595919"; transcript_version "1"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "RP11-34P13.16-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; tag "basic"; transcript_support_level "NA";
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
diff changeset
100 1 havana exon 137682 137965 . - . gene_id "ENSG00000269981"; gene_version "1"; transcript_id "ENST00000595919"; transcript_version "1"; exon_number "1"; gene_name "RP11-34P13.16"; gene_source "havana"; gene_biotype "processed_pseudogene"; transcript_name "RP11-34P13.16-001"; transcript_source "havana"; transcript_biotype "processed_pseudogene"; exon_id "ENSE00001936432"; exon_version "2"; tag "basic"; transcript_support_level "NA";