--- a/hamronize_summarize.xml	Tue Jul 05 22:37:53 2022 +0000
+++ b/hamronize_summarize.xml	Fri Aug 05 12:58:46 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 
+<tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
     <description> harmorization reports</description>
     <macros>
         <import>macros.xml</import>
@@ -12,20 +12,19 @@
             #elif $report.is_of_type('json'):
                 #set $ext = 'json'
             #end if
-        ln -s '$report' ./report_${counter}.${ext} &&
+            ln -s '$report' ./report_${counter}.${ext} &&
         #end for
 
         hamronize summarize
         --summary_type $summary_type
-        #if $summary_type == "tsv" 
+        #if $summary_type == "tsv"
             --output output.tsv
         #elif $summary_type == "json"
             --output output.json
-        #else 
+        #else
              --output output.html
         #end if
-        *.tsv
-        *.json
+        ./report_*
     ]]>    </command>
 
     <inputs>
@@ -70,11 +69,12 @@
     </tests>
     <help>
         <![CDATA[
-        **What it does**
-        This tool will take a list of report and create single sorted report in the specified format just containing the unique entries across input reports. It can handle mixed json and tsv hamronized report formats
-
-        **Inputs**
-        A list of hamronize reports
-    ]]>
+            **What it does**
+            This tool will take a list of report and create single sorted report in the specified format
+            just containing the unique entries across input reports. It can handle mixed json and tsv hamronized report formats
+            **Inputs**
+            A list of hamronize reports
+            
+        ]]>
     </help>
 </tool>