view test-data/summary.tsv @ 2:6e2731b13533 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit 9e7a6edfce21479297b713a515c68b4863d92271
author iuc
date Tue, 05 Jul 2022 22:37:53 +0000
parents ef76d74a7171
children
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input_file_name	gene_symbol	gene_name	reference_database_id	reference_database_version	reference_accession	analysis_software_name	analysis_software_version	sequence_identity	input_sequence_id	input_protein_start	input_protein_stop	input_gene_start	input_gene_stop	reference_protein_start	reference_protein_stop	reference_gene_start	reference_gene_stop	strand_orientation	coverage_depth	coverage_percentage	coverage_ratio	reference_gene_length	reference_protein_length	input_gene_length	input_protein_length	drug_class	antimicrobial_agent	resistance_mechanism
GCF_010120755.1_ASM1012075v1_genomic	aacA-ENT1	aminoglycoside 6'-N-acetyltransferase	ncbi	db_v_1	NG_052371.1	abricate	tool_v_1	100.0	NZ_CP039729.1			2163439	2163987					-		100.0						AMINOGLYCOSIDE		
GCF_010120755.1_ASM1012075v1_genomic	aacA-ENT1	aminoglycoside 6'-N-acetyltransferase	ncbi	db_v_1	NG_052371.1	abricate	tool_v_1	100.0	NZ_CP039729.1			2163439	2163987					-		100.0						AMINOGLYCOSIDE		
GCF_010120755.1_ASM1012075v1_genomic	eat(A)	ABC-F type ribosomal protection protein Eat(A)	ncbi	db_v_1	NG_047762.1	abricate	tool_v_1	100.0	NZ_CP039729.1			656118	657620					+		100.0						PLEUROMUTILIN		
GCF_010120755.1_ASM1012075v1_genomic	eat(A)	ABC-F type ribosomal protection protein Eat(A)	ncbi	db_v_1	NG_047762.1	abricate	tool_v_1	100.0	NZ_CP039729.1			656118	657620					+		100.0						PLEUROMUTILIN		
GCF_010120755.1_ASM1012075v1_genomic	msr(C)	ABC-F type ribosomal protection protein Msr(C)	ncbi	db_v_1	NG_048003.1	abricate	tool_v_1	98.92	NZ_CP039729.1			2564038	2565516					-		100.0						MACROLIDE		
GCF_010120755.1_ASM1012075v1_genomic	msr(C)	ABC-F type ribosomal protection protein Msr(C)	ncbi	db_v_1	NG_048003.1	abricate	tool_v_1	98.92	NZ_CP039729.1			2564038	2565516					-		100.0						MACROLIDE		
GCF_010120755.1_ASM1012075v1_genomic	vanH-M	D-lactate dehydrogenase VanH-M	ncbi	db_v_1	NG_048388.1	abricate	tool_v_1	100.0	NZ_CP039730.1			45227	46207					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanH-M	D-lactate dehydrogenase VanH-M	ncbi	db_v_1	NG_048388.1	abricate	tool_v_1	100.0	NZ_CP039730.1			45227	46207					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanM	D-alanine--(R)-lactate ligase VanM	ncbi	db_v_1	NG_048396.1	abricate	tool_v_1	100.0	NZ_CP039730.1			44203	45234					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanM	D-alanine--(R)-lactate ligase VanM	ncbi	db_v_1	NG_048396.1	abricate	tool_v_1	100.0	NZ_CP039730.1			44203	45234					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanS-M	VanM-type vancomycin resistance histidine kinase VanS	ncbi	db_v_1	NG_048450.1	abricate	tool_v_1	100.0	NZ_CP039730.1			47306	48418					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanS-M	VanM-type vancomycin resistance histidine kinase VanS	ncbi	db_v_1	NG_048450.1	abricate	tool_v_1	100.0	NZ_CP039730.1			47306	48418					-		100.0						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanX-M	D-Ala-D-Ala dipeptidase VanX-M	ncbi	db_v_1	NG_048495.1	abricate	tool_v_1	100.0	NZ_CP039730.1			43619	44197					-		95.07						VANCOMYCIN		
GCF_010120755.1_ASM1012075v1_genomic	vanX-M	D-Ala-D-Ala dipeptidase VanX-M	ncbi	db_v_1	NG_048495.1	abricate	tool_v_1	100.0	NZ_CP039730.1			43619	44197					-		95.07						VANCOMYCIN		
ariba_report	AAC_3__IId	AAC_3__IId.3004623.EU022314.1.0_861.5344	dbname	db_v_1	AAC_3__IId.3004623.EU022314.1.0_861.5344	ariba	ariba_v1	99.88	AAC_3__II-.l15.c4.ctg.1										37.8			861						
ariba_report	AAC_3__IId	AAC_3__IId.3004623.EU022314.1.0_861.5344	dbname	db_v_1	AAC_3__IId.3004623.EU022314.1.0_861.5344	ariba	ariba_v1	99.88	AAC_3__II-.l15.c4.ctg.1										37.8			861						
ariba_report	AAC_6___Ib4	AAC_6___Ib4.3002577.AF445082.2788_3343.401	dbname	db_v_1	AAC_6___Ib4.3002577.AF445082.2788_3343.401	ariba	ariba_v1	99.64	AAC_6___Ib+.l15.c30.ctg.1										128.1			555						
ariba_report	AAC_6___Ib4	AAC_6___Ib4.3002577.AF445082.2788_3343.401	dbname	db_v_1	AAC_6___Ib4.3002577.AF445082.2788_3343.401	ariba	ariba_v1	99.64	AAC_6___Ib+.l15.c30.ctg.1										128.1			555						
ariba_report	BRP_MBL_	BRP_MBL_.3001205.KC503911.1.9883_10249.5446	dbname	db_v_1	BRP_MBL_.3001205.KC503911.1.9883_10249.5446	ariba	ariba_v1	100.0	BRP_MBL_.l6.c4.ctg.1										27.3			366						
ariba_report	BRP_MBL_	BRP_MBL_.3001205.KC503911.1.9883_10249.5446	dbname	db_v_1	BRP_MBL_.3001205.KC503911.1.9883_10249.5446	ariba	ariba_v1	100.0	BRP_MBL_.l6.c4.ctg.1										27.3			366						
ariba_report	CRP	CRP.3000518.AP009048.1.4153663_4154296.4752	dbname	db_v_1	CRP.3000518.AP009048.1.4153663_4154296.4752	ariba	ariba_v1	93.84	CRP.l15.c4.ctg.1										24.1			633						
ariba_report	CRP	CRP.3000518.AP009048.1.4153663_4154296.4752	dbname	db_v_1	CRP.3000518.AP009048.1.4153663_4154296.4752	ariba	ariba_v1	93.84	CRP.l15.c4.ctg.1										24.1			633						
ariba_report	CTX_M_15	CTX_M_15.3001878.AY044436.1435_2311.1430	dbname	db_v_1	CTX_M_15.3001878.AY044436.1435_2311.1430	ariba	ariba_v1	100.0	CTX_M_-.l15.c4.ctg.1										36.0			876						
ariba_report	CTX_M_15	CTX_M_15.3001878.AY044436.1435_2311.1430	dbname	db_v_1	CTX_M_15.3001878.AY044436.1435_2311.1430	ariba	ariba_v1	100.0	CTX_M_-.l15.c4.ctg.1										36.0			876						
ariba_report	DHA_7	DHA_7.3002136.HQ456945.0_1140.1865	dbname	db_v_1	DHA_7.3002136.HQ456945.0_1140.1865	ariba	ariba_v1	100.0	DHA_-.l15.c4.ctg.1										29.8			1140						
ariba_report	DHA_7	DHA_7.3002136.HQ456945.0_1140.1865	dbname	db_v_1	DHA_7.3002136.HQ456945.0_1140.1865	ariba	ariba_v1	100.0	DHA_-.l15.c4.ctg.1										29.8			1140						
ariba_report	Escherichia_coli_23S	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	dbname	db_v_1	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	ariba	ariba_v1	97.1	Escherichia_coli_23S.l15.c17.ctg.1										611.4			2904						
ariba_report	Escherichia_coli_23S	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	dbname	db_v_1	Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164	ariba	ariba_v1	97.1	Escherichia_coli_23S.l15.c17.ctg.1										611.4			2904						
ariba_report	Escherichia_coli_EF_Tu	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	dbname	db_v_1	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	ariba	ariba_v1	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1										106.2			1185						
ariba_report	Escherichia_coli_EF_Tu	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	dbname	db_v_1	Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280	ariba	ariba_v1	96.12	Escherichia_coli_EF_Tu.l15.c30.ctg.1										106.2			1185						
ariba_report	Escherichia_coli_PtsI	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	dbname	db_v_1	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	ariba	ariba_v1	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2										23.5			1728						
ariba_report	Escherichia_coli_PtsI	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	dbname	db_v_1	Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675	ariba	ariba_v1	91.64	Escherichia_coli_PtsI.l15.c4.ctg.2										23.5			1728						
ariba_report	FosA6	FosA6.3004111.KU254579.1.59421_59841.4755	dbname	db_v_1	FosA6.3004111.KU254579.1.59421_59841.4755	ariba	ariba_v1	98.81	FosA-_1.l15.c4.ctg.1										27.2			420						
ariba_report	FosA6	FosA6.3004111.KU254579.1.59421_59841.4755	dbname	db_v_1	FosA6.3004111.KU254579.1.59421_59841.4755	ariba	ariba_v1	98.81	FosA-_1.l15.c4.ctg.1										27.2			420						
ariba_report	H_NS	H_NS.3000676.BA000007.3.1737690_1738104.5476	dbname	db_v_1	H_NS.3000676.BA000007.3.1737690_1738104.5476	ariba	ariba_v1	93.69	H_NS.l15.c4.ctg.1										20.6			414						
ariba_report	H_NS	H_NS.3000676.BA000007.3.1737690_1738104.5476	dbname	db_v_1	H_NS.3000676.BA000007.3.1737690_1738104.5476	ariba	ariba_v1	93.69	H_NS.l15.c4.ctg.1										20.6			414						
ariba_report	Klebsiella_mutant_PhoP	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	dbname	db_v_1	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	ariba	ariba_v1	100.0	Klebsiella_mutant_PhoP.l6.c4.ctg.1										48.2			672						
ariba_report	Klebsiella_mutant_PhoP	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	dbname	db_v_1	Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715	ariba	ariba_v1	100.0	Klebsiella_mutant_PhoP.l6.c4.ctg.1										48.2			672						
ariba_report	Klebsiella_pneumoniae_KpnE	Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	dbname	db_v_1	Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	ariba	ariba_v1	99.45	Klebsiella_pneumoniae_KpnE.l15.c4.ctg.1										56.7			363						
ariba_report	Klebsiella_pneumoniae_KpnE	Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	dbname	db_v_1	Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313	ariba	ariba_v1	99.45	Klebsiella_pneumoniae_KpnE.l15.c4.ctg.1										56.7			363						
ariba_report	Klebsiella_pneumoniae_KpnF	Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	dbname	db_v_1	Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	ariba	ariba_v1	100.0	Klebsiella_pneumoniae_KpnF.l15.c4.ctg.1										45.9			330						
ariba_report	Klebsiella_pneumoniae_KpnF	Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	dbname	db_v_1	Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312	ariba	ariba_v1	100.0	Klebsiella_pneumoniae_KpnF.l15.c4.ctg.1										45.9			330						
ariba_report	Klebsiella_pneumoniae_KpnG	Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	dbname	db_v_1	Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	ariba	ariba_v1	99.32	Klebsiella_pneumoniae_KpnG.l15.c4.ctg.1										66.3			1173						
ariba_report	Klebsiella_pneumoniae_KpnG	Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	dbname	db_v_1	Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311	ariba	ariba_v1	99.32	Klebsiella_pneumoniae_KpnG.l15.c4.ctg.1										66.3			1173						
ariba_report	Klebsiella_pneumoniae_OmpK35	Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	dbname	db_v_1	Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	ariba	ariba_v1	100.0	Klebsiella_pneumoniae_OmpK35.l15.c4.ctg.1										66.2			684						
ariba_report	Klebsiella_pneumoniae_OmpK35	Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	dbname	db_v_1	Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852	ariba	ariba_v1	100.0	Klebsiella_pneumoniae_OmpK35.l15.c4.ctg.1										66.2			684						
ariba_report	Klebsiella_pneumoniae_OmpK36	Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	dbname	db_v_1	Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	ariba	ariba_v1	99.82	Klebsiella_pneumoniae_OmpK36.l15.c4.ctg.1										74.2			1104						
ariba_report	Klebsiella_pneumoniae_OmpK36	Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	dbname	db_v_1	Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853	ariba	ariba_v1	99.82	Klebsiella_pneumoniae_OmpK36.l15.c4.ctg.1										74.2			1104						
ariba_report	Klebsiella_pneumoniae_OmpK37	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	dbname	db_v_1	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	ariba	ariba_v1	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1										66.2			1125						
ariba_report	Klebsiella_pneumoniae_OmpK37	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	dbname	db_v_1	Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406	ariba	ariba_v1	95.5	Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1										66.2			1125						
ariba_report	NDM_1	NDM_1.3000589.FN396876.2406_3219.4450	dbname	db_v_1	NDM_1.3000589.FN396876.2406_3219.4450	ariba	ariba_v1	100.0	NDM_-.l15.c4.ctg.1										27.2			813						
ariba_report	NDM_1	NDM_1.3000589.FN396876.2406_3219.4450	dbname	db_v_1	NDM_1.3000589.FN396876.2406_3219.4450	ariba	ariba_v1	100.0	NDM_-.l15.c4.ctg.1										27.2			813						
ariba_report	OXA_1	OXA_1.3001396.JN420336.1.1399_2230.4668	dbname	db_v_1	OXA_1.3001396.JN420336.1.1399_2230.4668	ariba	ariba_v1	100.0	OXA_-_3.l15.c4.ctg.1										22.5			831						
ariba_report	OXA_1	OXA_1.3001396.JN420336.1.1399_2230.4668	dbname	db_v_1	OXA_1.3001396.JN420336.1.1399_2230.4668	ariba	ariba_v1	100.0	OXA_-_3.l15.c4.ctg.1										22.5			831						
ariba_report	SHV_182	SHV_182.3001364.KP050489.0_861.2124	dbname	db_v_1	SHV_182.3001364.KP050489.0_861.2124	ariba	ariba_v1	99.88	SHV_-.l15.c4.ctg.1										41.0			861						
ariba_report	SHV_182	SHV_182.3001364.KP050489.0_861.2124	dbname	db_v_1	SHV_182.3001364.KP050489.0_861.2124	ariba	ariba_v1	99.88	SHV_-.l15.c4.ctg.1										41.0			861						
ariba_report	acrA	acrA.3004041.AJ318073.1.793_1990.3994	dbname	db_v_1	acrA.3004041.AJ318073.1.793_1990.3994	ariba	ariba_v1	97.74	acrA.l15.c4.ctg.1										61.7			1197						
ariba_report	acrA	acrA.3004042.DQ679966.299_1493.3995	dbname	db_v_1	acrA.3004042.DQ679966.299_1493.3995	ariba	ariba_v1	91.19	acrA_1.l15.c4.ctg.1										20.0			1194						
ariba_report	acrA	acrA.3004041.AJ318073.1.793_1990.3994	dbname	db_v_1	acrA.3004041.AJ318073.1.793_1990.3994	ariba	ariba_v1	97.74	acrA.l15.c4.ctg.1										61.7			1197						
ariba_report	acrA	acrA.3004042.DQ679966.299_1493.3995	dbname	db_v_1	acrA.3004042.DQ679966.299_1493.3995	ariba	ariba_v1	91.19	acrA_1.l15.c4.ctg.1										20.0			1194						
ariba_report	acrR	acrR.3003373.CP000647.489264_489915.2069	dbname	db_v_1	acrR.3003373.CP000647.489264_489915.2069	ariba	ariba_v1	99.85	acrR.l6.c4.ctg.1										65.8			651						
ariba_report	acrR	acrR.3003373.CP000647.489264_489915.2069	dbname	db_v_1	acrR.3003373.CP000647.489264_489915.2069	ariba	ariba_v1	99.85	acrR.l6.c4.ctg.1										65.8			651						
ariba_report	catB3	catB3.3002676.JX101693.1.58200_58833.5450	dbname	db_v_1	catB3.3002676.JX101693.1.58200_58833.5450	ariba	ariba_v1	100.0	catB3.l15.c4.ctg.1										31.5			633						
ariba_report	catB3	catB3.3002676.JX101693.1.58200_58833.5450	dbname	db_v_1	catB3.3002676.JX101693.1.58200_58833.5450	ariba	ariba_v1	100.0	catB3.l15.c4.ctg.1										31.5			633						
ariba_report	fabG	fabG.3004049.U00096.3.1150669_1151404.5523	dbname	db_v_1	fabG.3004049.U00096.3.1150669_1151404.5523	ariba	ariba_v1	92.27	fabG.l15.c4.ctg.1										12.3			735						
ariba_report	fabG	fabG.3004049.U00096.3.1150669_1151404.5523	dbname	db_v_1	fabG.3004049.U00096.3.1150669_1151404.5523	ariba	ariba_v1	92.27	fabG.l15.c4.ctg.1										12.3			735						
ariba_report	gyrA	gyrA.3003940.AE005674.2.2352231_2354859.5265	dbname	db_v_1	gyrA.3003940.AE005674.2.2352231_2354859.5265	ariba	ariba_v1	92.71	gyrA_9.l6.c17.ctg.2										40.9			2628						
ariba_report	gyrA	gyrA.3004334.AE006468.2.2373709_2376346.5394	dbname	db_v_1	gyrA.3004334.AE006468.2.2373709_2376346.5394	ariba	ariba_v1	92.44	gyrA_8.l15.c4.ctg.2										6.7			2637						
ariba_report	gyrA	gyrA.3003940.AE005674.2.2352231_2354859.5265	dbname	db_v_1	gyrA.3003940.AE005674.2.2352231_2354859.5265	ariba	ariba_v1	92.71	gyrA_9.l6.c17.ctg.2										40.9			2628						
ariba_report	gyrA	gyrA.3004334.AE006468.2.2373709_2376346.5394	dbname	db_v_1	gyrA.3004334.AE006468.2.2373709_2376346.5394	ariba	ariba_v1	92.44	gyrA_8.l15.c4.ctg.2										6.7			2637						
ariba_report	oqxA	oqxA.3003922.EU370913.1.46651_47827.5460	dbname	db_v_1	oqxA.3003922.EU370913.1.46651_47827.5460	ariba	ariba_v1	99.23	oqxA.l6.c4.ctg.1										55.6			1176						
ariba_report	oqxA	oqxA.3003922.EU370913.1.46651_47827.5460	dbname	db_v_1	oqxA.3003922.EU370913.1.46651_47827.5460	ariba	ariba_v1	99.23	oqxA.l6.c4.ctg.1										55.6			1176						
ariba_report	oqxB	oqxB.3003923.EU370913.1.47850_51003.5462	dbname	db_v_1	oqxB.3003923.EU370913.1.47850_51003.5462	ariba	ariba_v1	98.86	oqxB.l15.c4.ctg.1										57.2			3153						
ariba_report	oqxB	oqxB.3003923.EU370913.1.47850_51003.5462	dbname	db_v_1	oqxB.3003923.EU370913.1.47850_51003.5462	ariba	ariba_v1	98.86	oqxB.l15.c4.ctg.1										57.2			3153						
ariba_report	ramR	ramR.3003380.CP000647.1.622039_622621.4572	dbname	db_v_1	ramR.3003380.CP000647.1.622039_622621.4572	ariba	ariba_v1	100.0	ramR_1.l15.c4.ctg.1										53.5			582						
ariba_report	ramR	ramR.3003380.CP000647.1.622039_622621.4572	dbname	db_v_1	ramR.3003380.CP000647.1.622039_622621.4572	ariba	ariba_v1	100.0	ramR_1.l15.c4.ctg.1										53.5			582						
ariba_report	rmtC	rmtC.3000861.KJ476816.1.79_925.3396	dbname	db_v_1	rmtC.3000861.KJ476816.1.79_925.3396	ariba	ariba_v1	100.0	rmtC.l15.c17.ctg.1										36.8			846						
ariba_report	rmtC	rmtC.3000861.KJ476816.1.79_925.3396	dbname	db_v_1	rmtC.3000861.KJ476816.1.79_925.3396	ariba	ariba_v1	100.0	rmtC.l15.c17.ctg.1										36.8			846						
ariba_report	rpoB	rpoB.3003288.BA000007.3.4990267_4994296.5493	dbname	db_v_1	rpoB.3003288.BA000007.3.4990267_4994296.5493	ariba	ariba_v1	94.08	rpoB.l15.c4.ctg.1										30.1			4029						
ariba_report	rpoB	rpoB.3003288.BA000007.3.4990267_4994296.5493	dbname	db_v_1	rpoB.3003288.BA000007.3.4990267_4994296.5493	ariba	ariba_v1	93.44	rpoB.l15.c4.ctg.2										33.7			4029						
ariba_report	rpoB	rpoB.3003288.BA000007.3.4990267_4994296.5493	dbname	db_v_1	rpoB.3003288.BA000007.3.4990267_4994296.5493	ariba	ariba_v1	94.08	rpoB.l15.c4.ctg.1										30.1			4029						
ariba_report	rpoB	rpoB.3003288.BA000007.3.4990267_4994296.5493	dbname	db_v_1	rpoB.3003288.BA000007.3.4990267_4994296.5493	ariba	ariba_v1	93.44	rpoB.l15.c4.ctg.2										33.7			4029						
ariba_report	rrsD	rrsD.3003512.AE006468.3570463_3572006.3227	dbname	db_v_1	rrsD.3003512.AE006468.3570463_3572006.3227	ariba	ariba_v1	97.22	rrsB+.l15.c17.ctg.1										765.7			1544						
ariba_report	rrsD	rrsD.3003512.AE006468.3570463_3572006.3227	dbname	db_v_1	rrsD.3003512.AE006468.3570463_3572006.3227	ariba	ariba_v1	97.22	rrsB+.l15.c17.ctg.1										765.7			1544						
ariba_report	sul1	sul1.3000410.JF969163.1053_1893.340	dbname	db_v_1	sul1.3000410.JF969163.1053_1893.340	ariba	ariba_v1	99.88	sul1.l15.c17.ctg.1										43.9			840						
ariba_report	sul1	sul1.3000410.JF969163.1053_1893.340	dbname	db_v_1	sul1.3000410.JF969163.1053_1893.340	ariba	ariba_v1	99.88	sul1.l15.c17.ctg.1										43.9			840						
rgi_report	AAC(3)-IId	AAC(3)	CARD	card_v1	3004623	rgi	rgi_v1	100.0	NODE_39_length_11164_cov_23.0187_6			4569	5429					+		100.0						aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(3)-IId	AAC(3)	CARD	card_v1	3004623	rgi	rgi_v1	100.0	NODE_39_length_11164_cov_23.0187_6			4569	5429					+		100.0						aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib-cr	AAC(6')	CARD	card_v1	3002547	rgi	rgi_v1	95.45	NODE_54_length_1272_cov_25.1921_2 			1130	1270					+		23.62						fluoroquinolone antibiotic; aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib-cr	AAC(6')	CARD	card_v1	3002547	rgi	rgi_v1	100.0	NODE_185_length_335_cov_33.8077_1 			172	333					+		27.14						fluoroquinolone antibiotic; aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib-cr	AAC(6')	CARD	card_v1	3002547	rgi	rgi_v1	95.45	NODE_54_length_1272_cov_25.1921_2 			1130	1270					+		23.62						fluoroquinolone antibiotic; aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib-cr	AAC(6')	CARD	card_v1	3002547	rgi	rgi_v1	100.0	NODE_185_length_335_cov_33.8077_1 			172	333					+		27.14						fluoroquinolone antibiotic; aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib10	AAC(6')	CARD	card_v1	3002581	rgi	rgi_v1	100.0	NODE_69_length_625_cov_55.4398_1			63	623					-		91.63						aminoglycoside antibiotic		antibiotic inactivation
rgi_report	AAC(6')-Ib10	AAC(6')	CARD	card_v1	3002581	rgi	rgi_v1	100.0	NODE_69_length_625_cov_55.4398_1			63	623					-		91.63						aminoglycoside antibiotic		antibiotic inactivation
rgi_report	BRP(MBL)	Bleomycin resistant protein	CARD	card_v1	3001205	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_2 			1222	1482					+		71.07						glycopeptide antibiotic		antibiotic inactivation
rgi_report	BRP(MBL)	Bleomycin resistant protein	CARD	card_v1	3001205	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_2 			1222	1482					+		71.07						glycopeptide antibiotic		antibiotic inactivation
rgi_report	CBP-1	CBP beta-lactamase	CARD	card_v1	3004764	rgi	rgi_v1	100.0	NODE_19_length_86672_cov_43.8582_38 			39587	39811					-		24.03						penam		antibiotic inactivation
rgi_report	CBP-1	CBP beta-lactamase	CARD	card_v1	3004764	rgi	rgi_v1	100.0	NODE_19_length_86672_cov_43.8582_38 			39587	39811					-		24.03						penam		antibiotic inactivation
rgi_report	CRP	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000518	rgi	rgi_v1	99.05	NODE_9_length_203843_cov_42.4911_20			15303	15935					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; penam		antibiotic efflux
rgi_report	CRP	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000518	rgi	rgi_v1	99.05	NODE_9_length_203843_cov_42.4911_20			15303	15935					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; penam		antibiotic efflux
rgi_report	CTX-M-15	CTX-M beta-lactamase	CARD	card_v1	3001878	rgi	rgi_v1	100.0	NODE_47_length_3813_cov_27.9457_4			2763	3638					-		100.0						cephalosporin		antibiotic inactivation
rgi_report	CTX-M-15	CTX-M beta-lactamase	CARD	card_v1	3001878	rgi	rgi_v1	100.0	NODE_47_length_3813_cov_27.9457_4			2763	3638					-		100.0						cephalosporin		antibiotic inactivation
rgi_report	DHA-7	DHA beta-lactamase	CARD	card_v1	3002136	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_3 			1846	2862					-		89.18						cephalosporin; cephamycin		antibiotic inactivation
rgi_report	DHA-7	DHA beta-lactamase	CARD	card_v1	3002136	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_3 			1846	2862					-		89.18						cephalosporin; cephamycin		antibiotic inactivation
rgi_report	Escherichia coli ampH beta-lactamase	ampC-type beta-lactamase	CARD	card_v1	3004612	rgi	rgi_v1	85.71	NODE_6_length_262587_cov_42.4347_234			216120	217280					+		100.26						cephalosporin; penam		antibiotic inactivation
rgi_report	Escherichia coli ampH beta-lactamase	ampC-type beta-lactamase	CARD	card_v1	3004612	rgi	rgi_v1	85.71	NODE_6_length_262587_cov_42.4347_234			216120	217280					+		100.26						cephalosporin; penam		antibiotic inactivation
rgi_report	Escherichia coli mdfA	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3001328	rgi	rgi_v1	85.61	NODE_21_length_66123_cov_41.3566_52			60858	62090					+		100.0						tetracycline antibiotic; benzalkonium chloride; rhodamine		antibiotic efflux
rgi_report	Escherichia coli mdfA	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3001328	rgi	rgi_v1	85.61	NODE_21_length_66123_cov_41.3566_52			60858	62090					+		100.0						tetracycline antibiotic; benzalkonium chloride; rhodamine		antibiotic efflux
rgi_report	FosA6	fosfomycin thiol transferase	CARD	card_v1	3004111	rgi	rgi_v1	97.84	NODE_4_length_367278_cov_42.3139_12			14037	14456					+		100.0						fosfomycin		antibiotic inactivation
rgi_report	FosA6	fosfomycin thiol transferase	CARD	card_v1	3004111	rgi	rgi_v1	97.84	NODE_4_length_367278_cov_42.3139_12			14037	14456					+		100.0						fosfomycin		antibiotic inactivation
rgi_report	Klebsiella pneumoniae KpnE	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004580	rgi	rgi_v1	99.17	NODE_27_length_37761_cov_37.6839_21			25311	25673					+		100.0						macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnE	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004580	rgi	rgi_v1	99.17	NODE_27_length_37761_cov_37.6839_21			25311	25673					+		100.0						macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnF	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004583	rgi	rgi_v1	100.0	NODE_27_length_37761_cov_37.6839_22			25660	25989					+		100.0						macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnF	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004583	rgi	rgi_v1	100.0	NODE_27_length_37761_cov_37.6839_22			25660	25989					+		100.0						macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnG	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004588	rgi	rgi_v1	99.74	NODE_1_length_803036_cov_42.265_81			80036	81208					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnG	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004588	rgi	rgi_v1	99.74	NODE_1_length_803036_cov_42.265_81			80036	81208					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnH	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004597	rgi	rgi_v1	94.02	NODE_1_length_803036_cov_42.265_82			81224	82762					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem		antibiotic efflux
rgi_report	Klebsiella pneumoniae KpnH	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3004597	rgi	rgi_v1	94.02	NODE_1_length_803036_cov_42.265_82			81224	82762					+		100.0						macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem		antibiotic efflux
rgi_report	Klebsiella pneumoniae acrA	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3004041	rgi	rgi_v1	95.24	NODE_6_length_262587_cov_42.4347_106 			86156	87349					+		99.75						fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan		antibiotic efflux
rgi_report	Klebsiella pneumoniae acrA	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3004041	rgi	rgi_v1	95.24	NODE_6_length_262587_cov_42.4347_106 			86156	87349					+		99.75						fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan		antibiotic efflux
rgi_report	NDM-1	NDM beta-lactamase	CARD	card_v1	3000589	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_1			301	1113					+		100.0						carbapenem; cephalosporin; cephamycin; penam		antibiotic inactivation
rgi_report	NDM-1	NDM beta-lactamase	CARD	card_v1	3000589	rgi	rgi_v1	100.0	NODE_44_length_4295_cov_23.2123_1			301	1113					+		100.0						carbapenem; cephalosporin; cephamycin; penam		antibiotic inactivation
rgi_report	OXA-1	OXA beta-lactamase	CARD	card_v1	3001396	rgi	rgi_v1	100.0	NODE_51_length_1731_cov_22.5767_1			196	1026					+		100.0						cephalosporin; penam		antibiotic inactivation
rgi_report	OXA-1	OXA beta-lactamase	CARD	card_v1	3001396	rgi	rgi_v1	100.0	NODE_51_length_1731_cov_22.5767_1			196	1026					+		100.0						cephalosporin; penam		antibiotic inactivation
rgi_report	PmrF	pmr phosphoethanolamine transferase	CARD	card_v1	3003578	rgi	rgi_v1	83.69	NODE_9_length_203843_cov_42.4911_123			130217	131200					-		101.55						peptide antibiotic		antibiotic target alteration
rgi_report	PmrF	pmr phosphoethanolamine transferase	CARD	card_v1	3003578	rgi	rgi_v1	83.69	NODE_9_length_203843_cov_42.4911_123			130217	131200					-		101.55						peptide antibiotic		antibiotic target alteration
rgi_report	SHV-11	SHV beta-lactamase	CARD	card_v1	3001070	rgi	rgi_v1	100.0	NODE_11_length_157792_cov_39.2115_132			128890	129750					+		100.0						carbapenem; cephalosporin; penam		antibiotic inactivation
rgi_report	SHV-11	SHV beta-lactamase	CARD	card_v1	3001070	rgi	rgi_v1	100.0	NODE_11_length_157792_cov_39.2115_132			128890	129750					+		100.0						carbapenem; cephalosporin; penam		antibiotic inactivation
rgi_report	acrB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000216	rgi	rgi_v1	91.52	NODE_6_length_262587_cov_42.4347_107			87372	90518					+		99.9						fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan		antibiotic efflux
rgi_report	acrB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000216	rgi	rgi_v1	91.52	NODE_6_length_262587_cov_42.4347_107			87372	90518					+		99.9						fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan		antibiotic efflux
rgi_report	acrD	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000491	rgi	rgi_v1	90.94	NODE_3_length_454317_cov_40.2449_285			330238	333351					+		100.0						aminoglycoside antibiotic		antibiotic efflux
rgi_report	acrD	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000491	rgi	rgi_v1	90.94	NODE_3_length_454317_cov_40.2449_285			330238	333351					+		100.0						aminoglycoside antibiotic		antibiotic efflux
rgi_report	baeR	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000828	rgi	rgi_v1	90.83	NODE_3_length_454317_cov_40.2449_18			26745	27467					+		100.0						aminoglycoside antibiotic; aminocoumarin antibiotic		antibiotic efflux
rgi_report	baeR	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000828	rgi	rgi_v1	90.83	NODE_3_length_454317_cov_40.2449_18			26745	27467					+		100.0						aminoglycoside antibiotic; aminocoumarin antibiotic		antibiotic efflux
rgi_report	catB3	chloramphenicol acetyltransferase (CAT)	CARD	card_v1	3002676	rgi	rgi_v1	100.0	NODE_51_length_1731_cov_22.5767_2 			1164	1712					+		86.67						phenicol antibiotic		antibiotic inactivation
rgi_report	catB3	chloramphenicol acetyltransferase (CAT)	CARD	card_v1	3002676	rgi	rgi_v1	100.0	NODE_51_length_1731_cov_22.5767_2 			1164	1712					+		86.67						phenicol antibiotic		antibiotic inactivation
rgi_report	emrR	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3000516	rgi	rgi_v1	92.57	NODE_1_length_803036_cov_42.265_80			79380	79910					+		100.0						fluoroquinolone antibiotic		antibiotic efflux
rgi_report	emrR	major facilitator superfamily (MFS) antibiotic efflux pump	CARD	card_v1	3000516	rgi	rgi_v1	92.57	NODE_1_length_803036_cov_42.265_80			79380	79910					+		100.0						fluoroquinolone antibiotic		antibiotic efflux
rgi_report	marA	resistance-nodulation-cell division (RND) antibiotic efflux pump; General Bacterial Porin with reduced permeability to beta-lactams	CARD	card_v1	3000263	rgi	rgi_v1	92.74	NODE_11_length_157792_cov_39.2115_112			108413	108787					+		97.64						fluoroquinolone antibiotic; monobactam; carbapenem; cephalosporin; glycylcycline; cephamycin; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan; penem		antibiotic efflux; reduced permeability to antibiotic
rgi_report	marA	resistance-nodulation-cell division (RND) antibiotic efflux pump; General Bacterial Porin with reduced permeability to beta-lactams	CARD	card_v1	3000263	rgi	rgi_v1	92.74	NODE_11_length_157792_cov_39.2115_112			108413	108787					+		97.64						fluoroquinolone antibiotic; monobactam; carbapenem; cephalosporin; glycylcycline; cephamycin; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan; penem		antibiotic efflux; reduced permeability to antibiotic
rgi_report	mdtB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000793	rgi	rgi_v1	90.1	NODE_3_length_454317_cov_40.2449_14			17656	20778					+		100.0						aminocoumarin antibiotic		antibiotic efflux
rgi_report	mdtB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000793	rgi	rgi_v1	90.1	NODE_3_length_454317_cov_40.2449_14			17656	20778					+		100.0						aminocoumarin antibiotic		antibiotic efflux
rgi_report	mdtC	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000794	rgi	rgi_v1	91.41	NODE_3_length_454317_cov_40.2449_15			20779	23856					+		100.0						aminocoumarin antibiotic		antibiotic efflux
rgi_report	mdtC	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3000794	rgi	rgi_v1	91.41	NODE_3_length_454317_cov_40.2449_15			20779	23856					+		100.0						aminocoumarin antibiotic		antibiotic efflux
rgi_report	msbA	ATP-binding cassette (ABC) antibiotic efflux pump	CARD	card_v1	3003950	rgi	rgi_v1	92.78	NODE_8_length_247415_cov_40.5207_219			227800	229548					-		100.0						nitroimidazole antibiotic		antibiotic efflux
rgi_report	msbA	ATP-binding cassette (ABC) antibiotic efflux pump	CARD	card_v1	3003950	rgi	rgi_v1	92.78	NODE_8_length_247415_cov_40.5207_219			227800	229548					-		100.0						nitroimidazole antibiotic		antibiotic efflux
rgi_report	oqxA	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3003922	rgi	rgi_v1	100.0	NODE_1_length_803036_cov_42.265_33			30758	31933					+		100.0						fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic		antibiotic efflux
rgi_report	oqxA	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3003922	rgi	rgi_v1	100.0	NODE_1_length_803036_cov_42.265_33			30758	31933					+		100.0						fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic		antibiotic efflux
rgi_report	oqxB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3003923	rgi	rgi_v1	99.52	NODE_1_length_803036_cov_42.265_34			31957	35109					+		100.0						fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic		antibiotic efflux
rgi_report	oqxB	resistance-nodulation-cell division (RND) antibiotic efflux pump	CARD	card_v1	3003923	rgi	rgi_v1	99.52	NODE_1_length_803036_cov_42.265_34			31957	35109					+		100.0						fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic		antibiotic efflux
rgi_report	rmtC	16S rRNA methyltransferase (G1405)	CARD	card_v1	3000861	rgi	rgi_v1	100.0	NODE_40_length_7360_cov_24.8738_6			6358	7203					-		100.0						aminoglycoside antibiotic		antibiotic target alteration
rgi_report	rmtC	16S rRNA methyltransferase (G1405)	CARD	card_v1	3000861	rgi	rgi_v1	100.0	NODE_40_length_7360_cov_24.8738_6			6358	7203					-		100.0						aminoglycoside antibiotic		antibiotic target alteration
rgi_report	sul1	sulfonamide resistant sul	CARD	card_v1	3000410	rgi	rgi_v1	100.0	NODE_57_length_1134_cov_34.8908_1			25	864					-		100.0						sulfonamide antibiotic		antibiotic target replacement
rgi_report	sul1	sulfonamide resistant sul	CARD	card_v1	3000410	rgi	rgi_v1	100.0	NODE_57_length_1134_cov_34.8908_1			25	864					-		100.0						sulfonamide antibiotic		antibiotic target replacement