# HG changeset patch
# User iuc
# Date 1669375975 0
# Node ID 1efd17d2bfdbada320b6e4a10bbb0f9ead07801e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicstuff commit 021a99a3416955cd6906e95245da604fda92b255
diff -r 000000000000 -r 1efd17d2bfdb hicstuff_pipeline.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/hicstuff_pipeline.xml Fri Nov 25 11:32:55 2022 +0000
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+
+ generates a Hi-C contact matrix
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+ macros.xml
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diff -r 000000000000 -r 1efd17d2bfdb macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Fri Nov 25 11:32:55 2022 +0000
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+ 3.1.5
+ 21.09
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+ hicstuff
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+ 10.5281/zenodo.4066363
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+@software{cyril_matthey_doret_2020_4066351,
+ author = {Cyril Matthey-Doret and
+ Lyam Baudry and
+ Amaury Bignaud and
+ Axel Cournac and
+ Remi-Montagne and
+ Nadège Guiglielmoni and
+ Théo Foutel-Rodier and
+ Vittore F. Scolari},
+ title = {hicstuff: Simple library/pipeline to generate and handle Hi-C data },
+ month = oct,
+ year = 2020,
+ publisher = {Zenodo},
+ version = {v2.3.1},
+ doi = {10.5281/zenodo.4066351},
+ url = {http://doi.org/10.5281/zenodo.4066363}
+}
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diff -r 000000000000 -r 1efd17d2bfdb test-data/info_contigs.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/info_contigs.txt Fri Nov 25 11:32:55 2022 +0000
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+contig length n_frags cumul_length
+seq1 60000 12 0
+seq2 20000 4 12
diff -r 000000000000 -r 1efd17d2bfdb test-data/sample.reads_for.fastq.gz
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diff -r 000000000000 -r 1efd17d2bfdb test-data/sample.reads_rev.fastq.gz
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diff -r 000000000000 -r 1efd17d2bfdb test-data/seq.fa.gz
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