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comparison test-data/fn3.out @ 0:62479bdcc059 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4164b44c651bcbdac6637eccce61b2a802c9b569
author iuc
date Tue, 12 May 2015 15:04:26 -0400
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-1:000000000000 0:62479bdcc059
1 # hmmsearch :: search profile(s) against a sequence database
2 # HMMER 3.1 (February 2013); http://hmmer.org/
3 # Copyright (C) 2011 Howard Hughes Medical Institute.
4 # Freely distributed under the GNU General Public License (GPLv3).
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query HMM file: fn3.hmm
7 # target sequence database: 7LESS_DROME
8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
9
10 Query: fn3 [M=86]
11 Accession: PF00041.13
12 Description: Fibronectin type III domain
13 Scores for complete sequences (score includes all domains):
14 --- full sequence --- --- best 1 domain --- -#dom-
15 E-value score bias E-value score bias exp N Sequence Description
16 ------- ------ ----- ------- ------ ----- ---- -- -------- -----------
17 1.9e-57 178.0 0.4 1.2e-16 47.2 0.9 9.4 9 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7
18
19
20 Domain annotation for each sequence (and alignments):
21 >> 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7.10.1;
22 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
23 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
24 1 ? -1.3 0.0 0.17 0.17 61 74 .. 396 409 .. 395 411 .. 0.85
25 2 ! 40.7 0.0 1.3e-14 1.3e-14 2 84 .. 439 520 .. 437 521 .. 0.95
26 3 ! 14.4 0.0 2e-06 2e-06 13 85 .. 836 913 .. 826 914 .. 0.73
27 4 ! 5.1 0.0 0.0016 0.0016 10 36 .. 1209 1235 .. 1203 1259 .. 0.82
28 5 ! 24.3 0.0 1.7e-09 1.7e-09 14 80 .. 1313 1380 .. 1304 1386 .. 0.82
29 6 ? 0.0 0.0 0.063 0.063 58 72 .. 1754 1768 .. 1739 1769 .. 0.89
30 7 ! 47.2 0.9 1.2e-16 1.2e-16 1 85 [. 1799 1890 .. 1799 1891 .. 0.91
31 8 ! 17.8 0.0 1.8e-07 1.8e-07 6 74 .. 1904 1966 .. 1901 1976 .. 0.90
32 9 ! 12.8 0.0 6.6e-06 6.6e-06 1 86 [] 1993 2107 .. 1993 2107 .. 0.89
33
34 Alignments for each domain:
35 == domain 1 score: -1.3 bits; conditional E-value: 0.17
36 EES--TT-EEEEEE CS
37 fn3 61 ltgLepgteYefrV 74
38 l+ L p+t+Y+fr
39 7LESS_DROME 396 LEALIPYTQYRFRF 409
40 67899*******95 PP
41
42 == domain 2 score: 40.7 bits; conditional E-value: 1.3e-14
43 ---CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-E CS
44 fn3 2 saPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngagegp 84
45 saP ++ + ++ l ++W p + +gpi+gY++++++++++ + e+ vp+ s+ +++L++gt+Y++ + +n++gegp
46 7LESS_DROME 439 SAPVIEHLMGLDDSHLAVHWHPGRFTNGPIEGYRLRLSSSEGNA-TSEQLVPAGRGSYIFSQLQAGTNYTLALSMINKQGEGP 520
47 78999999999*****************************9998.**********************************9997 PP
48
49 == domain 3 score: 14.4 bits; conditional E-value: 2e-06
50 CTTEEEEEEE--S.--SS--S.....EEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTE.E-EB CS
51 fn3 13 tstsltlsWsppk.dgggpit.....gYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngag.egpe 85
52 ++ + +sW++p+ ++ + + +Ye+e+ ++ ++++ +++ ++ + l+ L+p+ Y++rV+a+n +g g++
53 7LESS_DROME 836 GAQAAKISWKEPErNPYQSADaarswSYELEVLDVASQSAFSIRNIRGPI--FGLQRLQPDNLYQLRVRAINVDGePGEW 913
54 56677889999987443333223333899999999999955555566666..**********************965655 PP
55
56 == domain 4 score: 5.1 bits; conditional E-value: 0.0016
57 EEECTTEEEEEEE--S--SS--SEEEE CS
58 fn3 10 sevtstsltlsWsppkdgggpitgYev 36
59 ++ + ++++W+p+++gg + ++Y++
60 7LESS_DROME 1209 DDGHWDDFHVRWQPSTSGGNHSVSYRL 1235
61 555678999*******99999999997 PP
62
63 == domain 5 score: 24.3 bits; conditional E-value: 1.7e-09
64 TTEEEEEEE--S...--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETT CS
65 fn3 14 stsltlsWsppk...dgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavnga 80
66 + s++l+W++p+ + + + Y + ++ ++ + e ++ ++ ++ +++L+p+++Y+f+V+a+ +a
67 7LESS_DROME 1313 NVSAVLRWDAPEqgqEAPMQALEYHISCWVG-SEL-HEELRLNQSALEARVEHLQPDQTYHFQVEARVAA 1380
68 5689********76556667899******55.665.688888888888*****************98665 PP
69
70 == domain 6 score: 0.0 bits; conditional E-value: 0.063
71 EEEEES--TT-EEEE CS
72 fn3 58 svtltgLepgteYef 72
73 s++lt+L p t+Y++
74 7LESS_DROME 1754 SLNLTDLLPFTRYRV 1768
75 799**********98 PP
76
77 == domain 7 score: 47.2 bits; conditional E-value: 1.2e-16
78 ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC.......GCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-EB CS
79 fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege.......ewqevtvprtttsvtltgLepgteYefrVqavngagegpe 85
80 ps+P+n+sv+ ++++l++sW pp++ +++ ++Y++++q++ +ge ++ + ++ +t+ ++ ltg++pg+ Y+++Vqa+ + +++ +
81 7LESS_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGEnvqdrreWEAHERRLETAGTHRLTGIKPGSGYSLWVQAHATPTKSNS 1890
82 9*************************************99989998****97777777777777*******************988776665 PP
83
84 == domain 8 score: 17.8 bits; conditional E-value: 1.8e-07
85 EEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEE CS
86 fn3 6 nlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrV 74
87 +l++ e ++ sl+l+W +p+ + ++e++++ e+ +++v +++t ++++ L+p t+Y+ r+
88 7LESS_DROME 1904 ELQLLELGPYSLSLTWAGT---PDPLGSLQLECRSSAEQ---LRRNVAGNHTKMVVEPLQPRTRYQCRL 1966
89 5788899************...8***********88555...79**********************986 PP
90
91 == domain 9 score: 12.8 bits; conditional E-value: 6.6e-06
92 ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC...........................GCEEEEEETTTS.EEEEES--TT- CS
93 fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege...........................ewqevtvprttt.svtltgLepgt 68
94 ps+P+ ++++ + + ++++W++ + +g+pi Y++e + ++ e+q+ + +tt+ s+ ++ L ++
95 7LESS_DROME 1993 PSQPGKPQLEHIAEEVFRVTWTAARGNGAPIALYNLEALQARSDIrrrrrrrrrnsggsleqlpwaeepvvvEDQWLDFCNTTElSCIVKSLHSSR 2088
96 89***********************9************7775554799999999999999999999999999999999999999999999999999 PP
97
98 EEEEEEEEEETTE.E-EBE CS
99 fn3 69 eYefrVqavngag.egpes 86
100 frV+a++ + +gp+s
101 7LESS_DROME 2089 LLLFRVRARSLEHgWGPYS 2107
102 9999999999554488876 PP
103
104
105
106 Internal pipeline statistics summary:
107 -------------------------------------
108 Query model(s): 1 (86 nodes)
109 Target sequences: 1 (2554 residues searched)
110 Passed MSV filter: 1 (1); expected 0.0 (0.02)
111 Passed bias filter: 1 (1); expected 0.0 (0.02)
112 Passed Vit filter: 1 (1); expected 0.0 (0.001)
113 Passed Fwd filter: 1 (1); expected 0.0 (1e-05)
114 Initial search space (Z): 1 [actual number of targets]
115 Domain search space (domZ): 1 [number of targets reported over threshold]
116 # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01
117 # Mc/sec: 21.96
118 //
119 [ok]