Mercurial > repos > iuc > hmmer3
diff test-data/globins.pfamtblout @ 0:62479bdcc059 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4164b44c651bcbdac6637eccce61b2a802c9b569
| author | iuc |
|---|---|
| date | Tue, 12 May 2015 15:04:26 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/globins.pfamtblout Tue May 12 15:04:26 2015 -0400 @@ -0,0 +1,25 @@ +# Sequence scores +# --------------- +# +# name bits E-value n exp bias description +# ------------------- ------ --------- --- ----- ----- --------------------- +sp|P02185|MYG_PHYCD 222.7 1.8e-70 1 1.0 3.2 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 +sp|P02024|HBB_GORGO 217.2 9.2e-69 1 1.0 0.1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 + +# Domain scores +# ------------- +# +# name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description +# ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- +sp|P02185|MYG_PHYCD 222.6 2e-70 1 3.2 1 148 2 148 2 149 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 +sp|P02024|HBB_GORGO 217.0 1e-68 1 0.1 2 147 2 147 1 149 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 +# +# Program: hmmsearch +# Version: 3.1b1 (May 2013) +# Pipeline mode: SEARCH +# Query file: test-data/globins4.hmm +# Target file: test-data/uniprot_matches.fasta +# Option settings: hmmsearch --tblout test-data/globins.tblout --domtblout test-data/globins.domtblout --pfamtblout test-data/globins.pfamtblout --notextw -E 10 --domE 10 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 2 test-data/globins4.hmm test-data/uniprot_matches.fasta +# Current dir: /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer +# Date: Mon Feb 9 14:36:36 2015 +# [ok]