Mercurial > repos > iuc > hmmer_alimask
comparison alimask.xml @ 9:e3e5f208e93c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author | iuc |
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date | Sun, 25 Feb 2024 18:32:14 +0000 |
parents | 3734a6ad6363 |
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8:3734a6ad6363 | 9:e3e5f208e93c |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="hmmer_alimask" name="alimask" version="@TOOL_VERSION@"> | 2 <tool id="hmmer_alimask" name="alimask" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
3 <description>append modelmask line to a multiple sequence alignments</description> | 3 <description>append modelmask line to a multiple sequence alignments</description> |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="bio_tools"/> | 7 <expand macro="bio_tools"/> |
8 <expand macro="requirements"/> | 8 <expand macro="requirements"/> |
9 <expand macro="stdio"/> | 9 <command detect_errors="aggressive"><![CDATA[ |
10 <command><![CDATA[ | |
11 alimask | 10 alimask |
12 | 11 |
13 #if $range_type.range_type_select == "model": | 12 #if $range_type.range_type_select == "model": |
14 #set range = ','.join( [ "%s-%s" % (str($range.modelrangestart), str($range.modelrangeend)) for $range in $range_type.modelranges]) | 13 #set range = ','.join( [ "%s-%s" % (str($range.modelrangestart), str($range.modelrangeend)) for $range in $range_type.modelranges]) |
15 --modelrange $range | 14 --modelrange $range |