Mercurial > repos > iuc > hmmer_alimask

comparison alimask.xml @ 9:e3e5f208e93c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author iuc
date Sun, 25 Feb 2024 18:32:14 +0000
parents 3734a6ad6363
children
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8:3734a6ad6363 9:e3e5f208e93c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hmmer_alimask" name="alimask" version="@TOOL_VERSION@"> 2 <tool id="hmmer_alimask" name="alimask" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>append modelmask line to a multiple sequence alignments</description> 3 <description>append modelmask line to a multiple sequence alignments</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="bio_tools"/> 7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <command detect_errors="aggressive"><![CDATA[
10 <command><![CDATA[
11 alimask 10 alimask
12 11
13 #if $range_type.range_type_select == "model": 12 #if $range_type.range_type_select == "model":
14 #set range = ','.join( [ "%s-%s" % (str($range.modelrangestart), str($range.modelrangeend)) for $range in $range_type.modelranges]) 13 #set range = ','.join( [ "%s-%s" % (str($range.modelrangestart), str($range.modelrangeend)) for $range in $range_type.modelranges])
15 --modelrange $range 14 --modelrange $range