Mercurial > repos > iuc > hmmer_hmmalign

annotate tool-data/hmm_database.loc.sample @ 2:2e7a30181368 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
author iuc
date Wed, 04 Apr 2018 13:59:49 -0400
parents 539c9ef3502b
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539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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1 #This is a sample file that enables the hmmer tools to find the HMM databases
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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2 #You will need to create these data files and then create
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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3 #a hmm_database.loc file similar to this one (store it in this directory)
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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4 #that points to the directories in which those files are stored.
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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5 #The hmm_database_indices.loc file has this format (longer white space characters are TAB characters):
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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6 #
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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7 #<unique_build_id> <display_name> <file_base_path>
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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8 #
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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9 #So, for example:
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
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10 #pfam_a Pfam-a /data/db/pfam/Pfam-A.hmm