Mercurial > repos > iuc > hmmer_hmmalign

annotate tool-data/hmm_database.loc.sample @ 8:9319e9ed248b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:25:36 +0000
parents 539c9ef3502b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
1 #This is a sample file that enables the hmmer tools to find the HMM databases
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
2 #You will need to create these data files and then create
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
3 #a hmm_database.loc file similar to this one (store it in this directory)
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
4 #that points to the directories in which those files are stored.
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
5 #The hmm_database_indices.loc file has this format (longer white space characters are TAB characters):
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
6 #
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
7 #<unique_build_id> <display_name> <file_base_path>
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
8 #
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
9 #So, for example:
539c9ef3502b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 2c4b4a154e2f07730fdfdaf66a09e1e09ac5efde
iuc
parents:
diff changeset
10 #pfam_a Pfam-a /data/db/pfam/Pfam-A.hmm