Mercurial > repos > iuc > hmmer_hmmalign
diff test-data/fn3.out @ 0:17a98a843911 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:04:42 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fn3.out Sat Jun 25 15:04:42 2016 -0400 @@ -0,0 +1,119 @@ +# hmmsearch :: search profile(s) against a sequence database +# HMMER 3.1 (February 2013); http://hmmer.org/ +# Copyright (C) 2011 Howard Hughes Medical Institute. +# Freely distributed under the GNU General Public License (GPLv3). +# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - +# query HMM file: fn3.hmm +# target sequence database: 7LESS_DROME +# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + +Query: fn3 [M=86] +Accession: PF00041.13 +Description: Fibronectin type III domain +Scores for complete sequences (score includes all domains): + --- full sequence --- --- best 1 domain --- -#dom- + E-value score bias E-value score bias exp N Sequence Description + ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- + 1.9e-57 178.0 0.4 1.2e-16 47.2 0.9 9.4 9 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7 + + +Domain annotation for each sequence (and alignments): +>> 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7.10.1; + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ? -1.3 0.0 0.17 0.17 61 74 .. 396 409 .. 395 411 .. 0.85 + 2 ! 40.7 0.0 1.3e-14 1.3e-14 2 84 .. 439 520 .. 437 521 .. 0.95 + 3 ! 14.4 0.0 2e-06 2e-06 13 85 .. 836 913 .. 826 914 .. 0.73 + 4 ! 5.1 0.0 0.0016 0.0016 10 36 .. 1209 1235 .. 1203 1259 .. 0.82 + 5 ! 24.3 0.0 1.7e-09 1.7e-09 14 80 .. 1313 1380 .. 1304 1386 .. 0.82 + 6 ? 0.0 0.0 0.063 0.063 58 72 .. 1754 1768 .. 1739 1769 .. 0.89 + 7 ! 47.2 0.9 1.2e-16 1.2e-16 1 85 [. 1799 1890 .. 1799 1891 .. 0.91 + 8 ! 17.8 0.0 1.8e-07 1.8e-07 6 74 .. 1904 1966 .. 1901 1976 .. 0.90 + 9 ! 12.8 0.0 6.6e-06 6.6e-06 1 86 [] 1993 2107 .. 1993 2107 .. 0.89 + + Alignments for each domain: + == domain 1 score: -1.3 bits; conditional E-value: 0.17 + EES--TT-EEEEEE CS + fn3 61 ltgLepgteYefrV 74 + l+ L p+t+Y+fr + 7LESS_DROME 396 LEALIPYTQYRFRF 409 + 67899*******95 PP + + == domain 2 score: 40.7 bits; conditional E-value: 1.3e-14 + ---CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-E CS + fn3 2 saPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngagegp 84 + saP ++ + ++ l ++W p + +gpi+gY++++++++++ + e+ vp+ s+ +++L++gt+Y++ + +n++gegp + 7LESS_DROME 439 SAPVIEHLMGLDDSHLAVHWHPGRFTNGPIEGYRLRLSSSEGNA-TSEQLVPAGRGSYIFSQLQAGTNYTLALSMINKQGEGP 520 + 78999999999*****************************9998.**********************************9997 PP + + == domain 3 score: 14.4 bits; conditional E-value: 2e-06 + CTTEEEEEEE--S.--SS--S.....EEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTE.E-EB CS + fn3 13 tstsltlsWsppk.dgggpit.....gYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngag.egpe 85 + ++ + +sW++p+ ++ + + +Ye+e+ ++ ++++ +++ ++ + l+ L+p+ Y++rV+a+n +g g++ + 7LESS_DROME 836 GAQAAKISWKEPErNPYQSADaarswSYELEVLDVASQSAFSIRNIRGPI--FGLQRLQPDNLYQLRVRAINVDGePGEW 913 + 56677889999987443333223333899999999999955555566666..**********************965655 PP + + == domain 4 score: 5.1 bits; conditional E-value: 0.0016 + EEECTTEEEEEEE--S--SS--SEEEE CS + fn3 10 sevtstsltlsWsppkdgggpitgYev 36 + ++ + ++++W+p+++gg + ++Y++ + 7LESS_DROME 1209 DDGHWDDFHVRWQPSTSGGNHSVSYRL 1235 + 555678999*******99999999997 PP + + == domain 5 score: 24.3 bits; conditional E-value: 1.7e-09 + TTEEEEEEE--S...--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETT CS + fn3 14 stsltlsWsppk...dgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavnga 80 + + s++l+W++p+ + + + Y + ++ ++ + e ++ ++ ++ +++L+p+++Y+f+V+a+ +a + 7LESS_DROME 1313 NVSAVLRWDAPEqgqEAPMQALEYHISCWVG-SEL-HEELRLNQSALEARVEHLQPDQTYHFQVEARVAA 1380 + 5689********76556667899******55.665.688888888888*****************98665 PP + + == domain 6 score: 0.0 bits; conditional E-value: 0.063 + EEEEES--TT-EEEE CS + fn3 58 svtltgLepgteYef 72 + s++lt+L p t+Y++ + 7LESS_DROME 1754 SLNLTDLLPFTRYRV 1768 + 799**********98 PP + + == domain 7 score: 47.2 bits; conditional E-value: 1.2e-16 + ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC.......GCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-EB CS + fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege.......ewqevtvprtttsvtltgLepgteYefrVqavngagegpe 85 + ps+P+n+sv+ ++++l++sW pp++ +++ ++Y++++q++ +ge ++ + ++ +t+ ++ ltg++pg+ Y+++Vqa+ + +++ + + 7LESS_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGEnvqdrreWEAHERRLETAGTHRLTGIKPGSGYSLWVQAHATPTKSNS 1890 + 9*************************************99989998****97777777777777*******************988776665 PP + + == domain 8 score: 17.8 bits; conditional E-value: 1.8e-07 + EEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEE CS + fn3 6 nlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrV 74 + +l++ e ++ sl+l+W +p+ + ++e++++ e+ +++v +++t ++++ L+p t+Y+ r+ + 7LESS_DROME 1904 ELQLLELGPYSLSLTWAGT---PDPLGSLQLECRSSAEQ---LRRNVAGNHTKMVVEPLQPRTRYQCRL 1966 + 5788899************...8***********88555...79**********************986 PP + + == domain 9 score: 12.8 bits; conditional E-value: 6.6e-06 + ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC...........................GCEEEEEETTTS.EEEEES--TT- CS + fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege...........................ewqevtvprttt.svtltgLepgt 68 + ps+P+ ++++ + + ++++W++ + +g+pi Y++e + ++ e+q+ + +tt+ s+ ++ L ++ + 7LESS_DROME 1993 PSQPGKPQLEHIAEEVFRVTWTAARGNGAPIALYNLEALQARSDIrrrrrrrrrnsggsleqlpwaeepvvvEDQWLDFCNTTElSCIVKSLHSSR 2088 + 89***********************9************7775554799999999999999999999999999999999999999999999999999 PP + + EEEEEEEEEETTE.E-EBE CS + fn3 69 eYefrVqavngag.egpes 86 + frV+a++ + +gp+s + 7LESS_DROME 2089 LLLFRVRARSLEHgWGPYS 2107 + 9999999999554488876 PP + + + +Internal pipeline statistics summary: +------------------------------------- +Query model(s): 1 (86 nodes) +Target sequences: 1 (2554 residues searched) +Passed MSV filter: 1 (1); expected 0.0 (0.02) +Passed bias filter: 1 (1); expected 0.0 (0.02) +Passed Vit filter: 1 (1); expected 0.0 (0.001) +Passed Fwd filter: 1 (1); expected 0.0 (1e-05) +Initial search space (Z): 1 [actual number of targets] +Domain search space (domZ): 1 [number of targets reported over threshold] +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 21.96 +// +[ok]