Mercurial > repos > iuc > hmmer_hmmalign
view test-data/fn3.out @ 2:2e7a30181368 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
| author | iuc |
|---|---|
| date | Wed, 04 Apr 2018 13:59:49 -0400 |
| parents | 17a98a843911 |
| children |
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# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1 (February 2013); http://hmmer.org/ # Copyright (C) 2011 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: fn3.hmm # target sequence database: 7LESS_DROME # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: fn3 [M=86] Accession: PF00041.13 Description: Fibronectin type III domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-57 178.0 0.4 1.2e-16 47.2 0.9 9.4 9 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7 Domain annotation for each sequence (and alignments): >> 7LESS_DROME RecName: Full=Protein sevenless; EC=2.7.10.1; # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 0.17 0.17 61 74 .. 396 409 .. 395 411 .. 0.85 2 ! 40.7 0.0 1.3e-14 1.3e-14 2 84 .. 439 520 .. 437 521 .. 0.95 3 ! 14.4 0.0 2e-06 2e-06 13 85 .. 836 913 .. 826 914 .. 0.73 4 ! 5.1 0.0 0.0016 0.0016 10 36 .. 1209 1235 .. 1203 1259 .. 0.82 5 ! 24.3 0.0 1.7e-09 1.7e-09 14 80 .. 1313 1380 .. 1304 1386 .. 0.82 6 ? 0.0 0.0 0.063 0.063 58 72 .. 1754 1768 .. 1739 1769 .. 0.89 7 ! 47.2 0.9 1.2e-16 1.2e-16 1 85 [. 1799 1890 .. 1799 1891 .. 0.91 8 ! 17.8 0.0 1.8e-07 1.8e-07 6 74 .. 1904 1966 .. 1901 1976 .. 0.90 9 ! 12.8 0.0 6.6e-06 6.6e-06 1 86 [] 1993 2107 .. 1993 2107 .. 0.89 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.17 EES--TT-EEEEEE CS fn3 61 ltgLepgteYefrV 74 l+ L p+t+Y+fr 7LESS_DROME 396 LEALIPYTQYRFRF 409 67899*******95 PP == domain 2 score: 40.7 bits; conditional E-value: 1.3e-14 ---CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-E CS fn3 2 saPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngagegp 84 saP ++ + ++ l ++W p + +gpi+gY++++++++++ + e+ vp+ s+ +++L++gt+Y++ + +n++gegp 7LESS_DROME 439 SAPVIEHLMGLDDSHLAVHWHPGRFTNGPIEGYRLRLSSSEGNA-TSEQLVPAGRGSYIFSQLQAGTNYTLALSMINKQGEGP 520 78999999999*****************************9998.**********************************9997 PP == domain 3 score: 14.4 bits; conditional E-value: 2e-06 CTTEEEEEEE--S.--SS--S.....EEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTE.E-EB CS fn3 13 tstsltlsWsppk.dgggpit.....gYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavngag.egpe 85 ++ + +sW++p+ ++ + + +Ye+e+ ++ ++++ +++ ++ + l+ L+p+ Y++rV+a+n +g g++ 7LESS_DROME 836 GAQAAKISWKEPErNPYQSADaarswSYELEVLDVASQSAFSIRNIRGPI--FGLQRLQPDNLYQLRVRAINVDGePGEW 913 56677889999987443333223333899999999999955555566666..**********************965655 PP == domain 4 score: 5.1 bits; conditional E-value: 0.0016 EEECTTEEEEEEE--S--SS--SEEEE CS fn3 10 sevtstsltlsWsppkdgggpitgYev 36 ++ + ++++W+p+++gg + ++Y++ 7LESS_DROME 1209 DDGHWDDFHVRWQPSTSGGNHSVSYRL 1235 555678999*******99999999997 PP == domain 5 score: 24.3 bits; conditional E-value: 1.7e-09 TTEEEEEEE--S...--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEEEEEETT CS fn3 14 stsltlsWsppk...dgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrVqavnga 80 + s++l+W++p+ + + + Y + ++ ++ + e ++ ++ ++ +++L+p+++Y+f+V+a+ +a 7LESS_DROME 1313 NVSAVLRWDAPEqgqEAPMQALEYHISCWVG-SEL-HEELRLNQSALEARVEHLQPDQTYHFQVEARVAA 1380 5689********76556667899******55.665.688888888888*****************98665 PP == domain 6 score: 0.0 bits; conditional E-value: 0.063 EEEEES--TT-EEEE CS fn3 58 svtltgLepgteYef 72 s++lt+L p t+Y++ 7LESS_DROME 1754 SLNLTDLLPFTRYRV 1768 799**********98 PP == domain 7 score: 47.2 bits; conditional E-value: 1.2e-16 ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC.......GCEEEEEETTTSEEEEES--TT-EEEEEEEEEETTEE-EB CS fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege.......ewqevtvprtttsvtltgLepgteYefrVqavngagegpe 85 ps+P+n+sv+ ++++l++sW pp++ +++ ++Y++++q++ +ge ++ + ++ +t+ ++ ltg++pg+ Y+++Vqa+ + +++ + 7LESS_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGEnvqdrreWEAHERRLETAGTHRLTGIKPGSGYSLWVQAHATPTKSNS 1890 9*************************************99989998****97777777777777*******************988776665 PP == domain 8 score: 17.8 bits; conditional E-value: 1.8e-07 EEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCCGCEEEEEETTTSEEEEES--TT-EEEEEE CS fn3 6 nlsvsevtstsltlsWsppkdgggpitgYeveyqekgegeewqevtvprtttsvtltgLepgteYefrV 74 +l++ e ++ sl+l+W +p+ + ++e++++ e+ +++v +++t ++++ L+p t+Y+ r+ 7LESS_DROME 1904 ELQLLELGPYSLSLTWAGT---PDPLGSLQLECRSSAEQ---LRRNVAGNHTKMVVEPLQPRTRYQCRL 1966 5788899************...8***********88555...79**********************986 PP == domain 9 score: 12.8 bits; conditional E-value: 6.6e-06 ----CEEEEEEECTTEEEEEEE--S--SS--SEEEEEEEETTTCC...........................GCEEEEEETTTS.EEEEES--TT- CS fn3 1 psaPenlsvsevtstsltlsWsppkdgggpitgYeveyqekgege...........................ewqevtvprttt.svtltgLepgt 68 ps+P+ ++++ + + ++++W++ + +g+pi Y++e + ++ e+q+ + +tt+ s+ ++ L ++ 7LESS_DROME 1993 PSQPGKPQLEHIAEEVFRVTWTAARGNGAPIALYNLEALQARSDIrrrrrrrrrnsggsleqlpwaeepvvvEDQWLDFCNTTElSCIVKSLHSSR 2088 89***********************9************7775554799999999999999999999999999999999999999999999999999 PP EEEEEEEEEETTE.E-EBE CS fn3 69 eYefrVqavngag.egpes 86 frV+a++ + +gp+s 7LESS_DROME 2089 LLLFRVRARSLEHgWGPYS 2107 9999999999554488876 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (86 nodes) Target sequences: 1 (2554 residues searched) Passed MSV filter: 1 (1); expected 0.0 (0.02) Passed bias filter: 1 (1); expected 0.0 (0.02) Passed Vit filter: 1 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 21.96 // [ok]