Mercurial > repos > iuc > hmmer_hmmalign

view test-data/nhmmer.out.tblout @ 4:ca0b674e895b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:51:03 -0400
parents a9c62fc8187b
children b2453ee52845
line wrap: on
line source

# target name                 accession  query name           accession   hmmfrom hmm to alifrom  ali to envfrom  env to  sq len strand   E-value  score  bias  description of target
#         ------------------- ---------- --------------------  ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
humanchr1/239220001-239550000 -          MADE1                DF0000629.2       4      80  302390  302466  302387  302466  330000    +     8.7e-11   39.2   7.4  -
humanchr1/239220001-239550000 -          MADE1                DF0000629.2       1      43  174456  174498  174456  174518  330000    +     6.4e-08   30.0   8.3  -
humanchr1/239220001-239550000 -          MADE1                DF0000629.2       1      77  302466  302390  302466  302387  330000    -     9.3e-08   29.5   6.1  -
humanchr1/239220001-239550000 -          MADE1                DF0000629.2      43      80  174493  174456  174513  174456  330000    -     6.3e-06   23.7   7.0  -
humanchr1/239220001-239550000 -          MADE1                DF0000629.2      41      72  304073  304104  304053  304109  330000    +         1.4    6.5   7.0  -
#
# Program:         nhmmer
# Version:         3.2 (June 2018)
# Pipeline mode:   SEARCH
# Query file:      /tmp/tmpp4O0Ju/files/000/dataset_36.dat
# Target file:     /tmp/tmpp4O0Ju/files/000/dataset_37.dat
# Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat 
# Current dir:     /tmp/tmpp4O0Ju/job_working_directory/000/30/working
# Date:            Fri Jun  8 12:18:56 2018
# [ok]