Mercurial > repos > iuc > hmmer_hmmbuild

comparison hmmbuild.xml @ 5:750269125dc9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:38:16 -0400
parents 7ea31fc35394
children 6846f8789e33
comparison
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4:d0875d3f6544 5:750269125dc9
52 </outputs> 52 </outputs>
53 <tests> 53 <tests>
54 <test> 54 <test>
55 <param name="msafile" value="globins4.sto"/> 55 <param name="msafile" value="globins4.sto"/>
56 <expand macro="seed_test" /> 56 <expand macro="seed_test" />
57 <output name="hmmout" file="globins4.hmm" lines_diff="10"/> 57 <output name="hmmout" file="globins4.hmm" compare="sim_size">
58 <assert_contents>
59 <has_line_matching expression="HMMER3/f.*"/>
60 <has_line_matching expression="ALPH amino"/>
61 <has_line_matching expression="NSEQ 4"/>
62 <has_line_matching expression="//"/>
63 </assert_contents>
64 </output>
58 </test> 65 </test>
59 <test> 66 <test>
60 <param name="msafile" value="MADE1.sto"/> 67 <param name="msafile" value="MADE1.sto"/>
61 <param name="input_format_select" value="--dna"/> 68 <param name="input_format_select" value="--dna"/>
62 <expand macro="seed_test" /> 69 <expand macro="seed_test" />
63 <output name="hmmout" file="MADE1.hmm" lines_diff="14"/> 70 <output name="hmmout" file="MADE1.hmm" compare="sim_size">
71 <assert_contents>
72 <has_line_matching expression="HMMER3/f.*"/>
73 <has_line_matching expression="ALPH DNA"/>
74 <has_line_matching expression="NSEQ 1997"/>
75 <has_line_matching expression="//"/>
76 </assert_contents>
77 </output>
64 </test> 78 </test>
65 </tests> 79 </tests>
66 <help><![CDATA[ 80 <help><![CDATA[
67 @HELP_PRE@ 81 @HELP_PRE@
68 82