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comparison test-data/uniprot_globins_match.out @ 5:750269125dc9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:38:16 -0400
parents d0875d3f6544
children dc8860ba75d1
comparison
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4:d0875d3f6544 5:750269125dc9
1 # hmmsearch :: search profile(s) against a sequence database 1 # hmmsearch :: search profile(s) against a sequence database
2 # HMMER 3.2 (June 2018); http://hmmer.org/ 2 # HMMER 3.3 (Nov 2019); http://hmmer.org/
3 # Copyright (C) 2018 Howard Hughes Medical Institute. 3 # Copyright (C) 2019 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license. 4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query HMM file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat 6 # query HMM file: /tmp/tmpqydies2m/files/1/e/c/dataset_1eca2f81-02d4-4cd0-9081-3ea0f7eb36d7.dat
7 # target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_26.dat 7 # target sequence database: /tmp/tmpqydies2m/files/a/4/d/dataset_a4d3f992-2c56-4231-9590-fe0ab1f6413b.dat
8 # per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_28.dat
9 # per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_29.dat
10 # pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_30.dat
11 # max ASCII text line length: unlimited 8 # max ASCII text line length: unlimited
12 # Vit filter P threshold: <= 0.001 9 # Vit filter P threshold: <= 0.001
13 # Fwd filter P threshold: <= 1e-05 10 # Fwd filter P threshold: <= 1e-05
14 # random number seed set to: 4 11 # random number seed set to: 4
15 # number of worker threads: 1 12 # number of worker threads: 1
16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 13 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
17 14
18 Query: dataset_x [M=149] 15 Query: dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 [M=149]
19 Scores for complete sequences (score includes all domains): 16 Scores for complete sequences (score includes all domains):
20 --- full sequence --- --- best 1 domain --- -#dom- 17 --- full sequence --- --- best 1 domain --- -#dom-
21 E-value score bias E-value score bias exp N Sequence Description 18 E-value score bias E-value score bias exp N Sequence Description
22 ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 19 ------- ------ ----- ------- ------ ----- ---- -- -------- -----------
23 1.8e-70 222.7 3.2 2e-70 222.6 3.2 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 20 1.3e-70 223.2 0.1 1.4e-70 223.0 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2
24 9.2e-69 217.2 0.1 1e-68 217.0 0.1 1.0 1 sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 21 5.8e-70 221.1 3.3 6.4e-70 220.9 3.3 1.0 1 sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2
25 22
26 23
27 Domain annotation for each sequence (and alignments): 24 Domain annotation for each sequence (and alignments):
25 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2
26 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
27 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
28 1 ! 223.0 0.1 1.4e-70 1.4e-70 1 149 [] 2 147 .] 2 147 .] 0.99
29
30 Alignments for each domain:
31 == domain 1 score: 223.0 bits; conditional E-value: 1.4e-70
32 dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 1 vvLseaektkvkavWakveadveevGadiLvrlfvsyPetqefFekFkdLstedelkgsadvkkHgkkvldAlsdalakldekleaelkaLselHakklkvdpkyfkllsevlvvvlaarlpkeftadvqaaleKllalvakalaskYk 149
33 v+L+++ek++v+a+W+kv +v+evG+++L rl+v+yP+tq+fFe+F+dLst+d+++g+++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a+va+ala+kY+
34 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147
35 69****************..*************************************************************.******************************************************************7 PP
36
28 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 37 >> sp|P02185|MYG_PHYCD Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2
29 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc 38 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
30 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 39 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
31 1 ! 222.6 3.2 2e-70 2e-70 2 149 .] 2 148 .. 1 148 [. 0.99 40 1 ! 220.9 3.3 6.4e-70 6.4e-70 2 149 .] 2 148 .. 1 148 [. 0.99
32 41
33 Alignments for each domain: 42 Alignments for each domain:
34 == domain 1 score: 222.6 bits; conditional E-value: 2e-70 43 == domain 1 score: 220.9 bits; conditional E-value: 6.4e-70
35 dataset_x 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 44 dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 2 vLseaektkvkavWakveadveevGadiLvrlfvsyPetqefFekFkdLstedelkgsadvkkHgkkvldAlsdalakldekleaelkaLselHakklkvdpkyfkllsevlvvvlaarlpkeftadvqaaleKllalvakalaskYk 149
36 vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk 45 vLse+e++ v++vWakveadv+++G+diL+rlf+s+Pet+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++eaelk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk
37 sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 46 sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148
38 8*****************************************************************************.99******************************************************************7 PP 47 8*****************************************************************************.99******************************************************************7 PP
39
40 >> sp|P02024|HBB_GORGO Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2
41 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
42 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
43 1 ! 217.0 0.1 1e-68 1e-68 1 149 [] 2 147 .] 2 147 .] 0.99
44
45 Alignments for each domain:
46 == domain 1 score: 217.0 bits; conditional E-value: 1e-68
47 dataset_x 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149
48 v+L+++ek++v+a+W+kv +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+
49 sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147
50 69****************..*************************************************************.******************************************************************7 PP
51 48
52 49
53 50
54 Internal pipeline statistics summary: 51 Internal pipeline statistics summary:
55 ------------------------------------- 52 -------------------------------------
60 Passed Vit filter: 2 (1); expected 0.0 (0.001) 57 Passed Vit filter: 2 (1); expected 0.0 (0.001)
61 Passed Fwd filter: 2 (1); expected 0.0 (1e-05) 58 Passed Fwd filter: 2 (1); expected 0.0 (1e-05)
62 Initial search space (Z): 2 [actual number of targets] 59 Initial search space (Z): 2 [actual number of targets]
63 Domain search space (domZ): 2 [number of targets reported over threshold] 60 Domain search space (domZ): 2 [number of targets reported over threshold]
64 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 61 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
65 # Mc/sec: 20.02 62 # Mc/sec: 18.86
66 // 63 //
67 [ok] 64 [ok]