Mercurial > repos > iuc > hmmer_hmmbuild
view test-data/MADE1.hmm @ 8:923db0592cd0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
| author | iuc |
|---|---|
| date | Mon, 06 Nov 2023 20:26:19 +0000 |
| parents | dc8860ba75d1 |
| children |
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HMMER3/f [3.3.2 | Nov 2020] NAME MADE1 ACC DF0000629.2 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon LENG 80 MAXL 190 ALPH DNA RF yes MM no CONS yes CS no MAP yes DATE Fri Jul 16 10:31:17 2021 NSEQ 1997 EFFN 4.772646 CKSUM 3015610723 GA 15.98 TC 32.00 NC 15.90 STATS LOCAL MSV -8.5015 0.71857 STATS LOCAL VITERBI -9.4437 0.71857 STATS LOCAL FORWARD -3.3601 0.71857 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26505 1.57847 1.62734 1.15507 1.38629 1.38629 1.38629 1.38629 0.03610 4.03273 4.03273 1.46634 0.26236 0.00000 * 1 2.88347 2.59729 3.00766 0.19823 1 t x - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03273 4.03273 1.46634 0.26236 1.09861 0.40547 2 2.84764 2.33775 2.99223 0.22904 2 t x - - 1.38629 1.38629 1.38629 1.38629 0.03318 4.11545 4.11545 1.46634 0.26236 1.09861 0.40547 3 0.23331 2.81609 2.55800 2.64795 3 a x - - 1.38629 1.38629 1.38629 1.38629 0.03194 4.15297 4.15297 1.46634 0.26236 1.09861 0.40547 4 2.10142 2.78158 0.31096 2.48849 4 g x - - 1.38629 1.38629 1.38629 1.38629 0.03116 4.17730 4.17730 1.46634 0.26236 1.09861 0.40547 5 2.03766 2.72525 0.33174 2.44801 5 g x - - 1.38629 1.38629 1.38629 1.38629 0.03089 4.19229 4.17979 1.46634 0.26236 1.09861 0.40547 6 2.50266 2.06695 2.58843 0.33348 6 t x - - 1.38538 1.38782 1.38660 1.38538 0.03244 4.19073 4.08723 1.46789 0.26190 1.09694 0.40630 7 2.60375 2.25725 2.67883 0.28406 12 t x - - 1.38907 1.38673 1.38907 1.38033 0.03193 4.10189 4.20735 1.39886 0.28353 1.08252 0.41361 8 2.19186 2.93555 0.26232 2.71924 14 g x - - 1.38629 1.38629 1.38629 1.38629 0.03142 4.21107 4.12859 1.46634 0.26236 1.09861 0.40547 9 2.07901 2.78051 0.30613 2.56850 15 g x - - 1.38350 1.38805 1.38560 1.38805 0.03149 4.16813 4.16598 1.44243 0.26965 1.09240 0.40859 10 2.57980 2.23058 2.70339 0.28799 18 t x - - 1.38730 1.38730 1.38730 1.38328 0.03029 4.19523 4.21518 1.45741 0.26506 1.09679 0.40638 11 2.09819 2.95912 0.27277 2.74586 21 g x - - 1.38506 1.38753 1.38753 1.38506 0.03438 4.20499 3.96976 1.46555 0.26260 1.09847 0.40554 12 2.73996 0.25202 2.91136 2.26531 26 c x - - 1.38701 1.38416 1.38701 1.38701 0.03125 4.18883 4.16044 1.44829 0.26784 1.07539 0.41728 13 0.27970 2.57147 2.50665 2.45312 28 a x - - 1.38695 1.38695 1.38433 1.38695 0.03063 4.20139 4.18737 1.44978 0.26739 1.09652 0.40651 14 0.27532 2.53583 2.54819 2.48584 30 a x - - 1.38514 1.38745 1.38514 1.38745 0.03161 4.20713 4.12095 1.45611 0.26545 1.10038 0.40458 15 0.22434 2.72071 2.78113 2.61512 33 a x - - 1.38788 1.38927 1.38318 1.38486 0.03686 4.17327 3.87329 1.44180 0.26984 1.10484 0.40236 16 0.43251 2.24579 2.21906 1.99092 37 a x - - 1.36200 1.39388 1.39592 1.39378 0.04715 3.92767 3.63579 1.28473 0.32397 1.06747 0.42141 17 2.14020 2.88555 0.27611 2.69098 41 g x - - 1.38394 1.38865 1.38865 1.38394 0.03184 4.19737 4.11610 1.46485 0.26281 1.06375 0.42336 18 2.54908 2.09631 2.66371 0.31574 46 t x - - 1.38086 1.39134 1.39054 1.38248 0.03937 4.05640 3.84942 1.45345 0.26626 1.11413 0.39779 19 0.45711 2.16557 2.17736 1.97423 57 a x - - 1.38787 1.39103 1.38646 1.37985 0.03547 4.14271 3.96510 1.44704 0.26823 1.13642 0.38708 20 0.30358 2.53734 2.46922 2.32172 66 a x - - 1.37069 1.39228 1.38994 1.39244 0.03311 4.09596 4.13961 1.41439 0.27849 1.11423 0.39775 21 2.54370 2.06068 2.71024 0.31809 74 t x - - 1.38671 1.38671 1.38837 1.38339 0.04565 4.21460 3.51159 1.48099 0.25801 1.14016 0.38532 22 2.44416 2.09512 2.52049 0.34288 84 t x - - 1.38754 1.39327 1.39136 1.37313 0.04852 4.04797 3.50981 1.37593 0.29116 1.16476 0.37396 23 2.14524 2.93015 0.27618 2.64656 88 g x - - 1.38759 1.38759 1.38243 1.38759 0.04319 4.15548 3.62703 1.43407 0.27225 1.21251 0.35304 24 2.08998 0.74813 2.30247 1.19387 90 c x - - 1.35915 1.41488 1.41633 1.35650 0.06422 3.83546 3.20373 1.48098 0.25801 1.22299 0.34863 25 1.44195 2.34602 0.62507 2.02072 106 g x - - 1.38116 1.39439 1.39704 1.37279 0.03982 4.11042 3.78798 1.50090 0.25222 1.29946 0.31839 26 1.95347 2.71204 0.35652 2.38912 131 g x - - 1.38844 1.40499 1.38340 1.36868 0.03816 3.94046 4.01750 1.48202 0.25771 1.28081 0.32547 27 2.17428 2.00153 2.08197 0.46761 151 t x - - 1.36950 1.40138 1.38862 1.38593 0.04163 3.96008 3.82973 1.45086 0.26705 1.29520 0.31999 28 2.63064 2.24524 2.71112 0.28024 170 t x - - 1.38160 1.39124 1.38588 1.38648 0.03869 4.04846 3.88745 1.48176 0.25778 1.28474 0.32396 29 2.65193 2.29047 2.74924 0.26881 194 t x - - 1.39316 1.38635 1.37265 1.39316 0.04182 4.06311 3.73956 1.56525 0.23450 1.32387 0.30939 30 2.64289 2.22300 2.73001 0.28059 215 t x - - 1.35772 1.41144 1.43663 1.34234 0.10242 3.97751 2.54313 1.79643 0.18139 1.29085 0.32163 31 2.26891 2.04957 2.21838 0.41703 248 t x - - 1.39765 1.43259 1.44535 1.27844 0.06955 3.31830 3.47470 1.22082 0.34954 0.95096 0.48836 32 2.04470 2.73226 0.32260 2.51028 280 g x - - 1.35741 1.43081 1.42275 1.33747 0.04193 3.93063 3.84295 1.76710 0.18733 1.24156 0.34099 33 2.35858 0.41780 2.53493 1.78566 317 c x - - 1.34456 1.41326 1.41477 1.37431 0.04602 4.01126 3.61681 1.74585 0.19176 1.18563 0.36464 34 2.12811 0.44070 2.57012 1.82744 347 c x - - 1.37758 1.40714 1.42610 1.33665 0.04358 3.89440 3.80370 1.68702 0.20465 1.25818 0.33431 35 0.38054 2.35727 2.22578 2.17289 388 a x - - 1.36892 1.40148 1.39605 1.37907 0.04697 3.84843 3.70605 1.58712 0.22880 1.27648 0.32714 36 2.58167 2.15098 2.67474 0.30238 439 t x - - 1.37521 1.39677 1.39678 1.37663 0.04670 4.02923 3.58127 1.57528 0.23187 1.30572 0.31605 37 2.40504 2.10297 2.45806 0.35376 465 t x - - 1.38174 1.43412 1.44016 1.29592 0.06954 3.75273 3.12982 1.87321 0.16680 1.18134 0.36653 38 0.51842 2.13748 1.95630 1.92958 512 a x - - 1.26062 1.52617 1.46618 1.31546 0.06473 3.52691 3.40282 2.11494 0.12856 1.27426 0.32800 39 2.41476 0.39430 2.59943 1.81929 550 c x - - 1.36465 1.40696 1.41230 1.36233 0.04348 3.90556 3.79796 1.69053 0.20386 1.30248 0.31726 40 2.38183 2.12623 2.50765 0.34690 578 t x - - 1.38409 1.39798 1.39794 1.36553 0.04109 3.97130 3.84392 1.60521 0.22420 1.32862 0.30767 41 2.66873 2.32268 2.69641 0.26762 592 t x - - 1.34240 1.42173 1.41470 1.36850 0.04353 3.85338 3.84491 1.60301 0.22476 1.25846 0.33420 42 2.53515 2.23303 2.60748 0.30134 609 t x - - 1.31567 1.43403 1.44808 1.35349 0.06381 3.89678 3.18177 1.81251 0.17822 1.30796 0.31522 43 2.08517 1.18879 2.27981 0.75753 646 t x - - 1.35645 1.49693 1.51284 1.20957 0.05829 3.38638 3.78127 1.66667 0.20933 1.14206 0.38443 44 0.34996 2.35638 2.35834 2.24486 675 a x - - 1.34533 1.40942 1.43949 1.35397 0.04988 3.81123 3.62941 1.63911 0.21586 1.24598 0.33920 45 0.39888 2.38014 2.11983 2.15126 701 a x - - 1.20139 1.47163 1.46073 1.43714 0.07468 3.08583 3.63931 1.15859 0.37677 1.23926 0.34193 46 2.25489 2.11327 2.45245 0.37369 725 t x - - 1.34460 1.45056 1.47624 1.28582 0.05008 3.62316 3.80979 1.80369 0.17995 1.13293 0.38874 47 2.07249 2.78660 0.33175 2.35570 764 g x - - 1.34151 1.44243 1.46346 1.30651 0.05116 3.79082 3.60105 1.78406 0.18387 1.19531 0.36041 48 2.02574 2.75520 0.32599 2.49262 792 g x - - 1.37939 1.40455 1.39773 1.36401 0.04184 3.99754 3.78911 1.65229 0.21271 1.21129 0.35355 49 2.51376 0.34589 2.65910 1.95593 824 c x - - 1.37735 1.38944 1.38564 1.39283 0.04250 4.03019 3.73634 1.43891 0.27074 1.20591 0.35585 50 0.37929 2.28294 2.29219 2.18368 833 a x - - 1.38032 1.40070 1.41036 1.35471 0.03672 4.01292 4.01873 1.58321 0.22981 1.13819 0.38625 51 0.30179 2.55721 2.37379 2.40954 853 a x - - 1.37181 1.42012 1.41076 1.34435 0.05016 3.87151 3.57224 1.63505 0.21684 1.18702 0.36403 52 0.27218 2.56723 2.58756 2.44958 883 a x - - 1.36720 1.41773 1.41688 1.34536 0.04378 3.95507 3.74330 1.55207 0.23802 1.23311 0.34444 53 0.32594 2.44712 2.41620 2.27938 911 a x - - 1.38564 1.39969 1.39229 1.36784 0.08580 4.05257 2.73572 1.54044 0.24116 1.21220 0.35317 54 0.53092 2.03055 1.99429 1.93403 934 a x - - 1.25719 1.43671 1.43475 1.42851 0.05952 3.35434 3.77879 1.21135 0.35353 0.94763 0.49046 55 2.32427 0.37751 2.63253 1.93323 960 c x - - 1.34734 1.38792 1.40168 1.40939 0.04222 3.98345 3.78472 1.53373 0.24300 1.17391 0.36984 56 1.96472 0.77648 2.21308 1.23643 983 c x - - 1.36239 1.39842 1.41816 1.36725 0.04192 3.86418 3.90814 1.48437 0.25702 1.16188 0.37527 57 1.38762 2.43385 0.61520 2.10291 999 g x - - 1.35012 1.39777 1.40329 1.39491 0.03407 4.06641 4.11297 1.52565 0.24524 1.14553 0.38281 58 2.65508 0.31503 2.81411 1.96622 1017 c x - - 1.38281 1.41126 1.38498 1.36664 0.03307 4.10220 4.13567 1.57966 0.23073 1.16105 0.37565 59 0.41196 2.32035 2.07858 2.16890 1034 a x - - 1.38554 1.38554 1.38819 1.38590 0.03358 4.16772 4.04381 1.44043 0.27027 1.19285 0.36148 60 0.37748 2.45865 2.09636 2.24468 1037 a x - - 1.35351 1.39510 1.39860 1.39870 0.03659 4.01117 4.02751 1.42256 0.27588 1.02829 0.44257 61 2.57329 2.25117 2.74231 0.28234 1056 t x - - 1.37970 1.38988 1.38806 1.38757 0.03371 4.16660 4.03717 1.44400 0.26916 1.07669 0.41661 62 2.22816 2.19022 2.37918 0.37432 1060 t x - - 1.38622 1.38744 1.38744 1.38408 0.03436 4.18286 3.98860 1.43760 0.27115 1.07924 0.41529 63 0.34842 2.45717 2.22920 2.29357 1062 a x - - 1.37325 1.39303 1.39303 1.38599 0.03680 4.05488 3.97426 1.37157 0.29264 1.10504 0.40227 64 2.56440 0.33133 2.70657 1.97833 1068 c x - - 1.38051 1.39022 1.38613 1.38834 0.03425 4.07396 4.09452 1.40426 0.28176 1.06834 0.42095 65 2.22725 2.12689 2.33973 0.39065 1073 t x - - 1.38749 1.38362 1.38658 1.38749 0.03106 4.17886 4.18240 1.43637 0.27153 1.10614 0.40172 66 2.70567 2.38427 2.77207 0.25041 1075 t x - - 1.38263 1.38752 1.38752 1.38752 0.03104 4.20005 4.16238 1.45551 0.26564 1.08260 0.41357 67 2.77703 2.37312 2.82282 0.24188 1078 t x - - 1.38348 1.39069 1.38333 1.38769 0.03659 4.08849 3.95478 1.38473 0.28821 1.09815 0.40570 68 2.75338 2.37589 2.82611 0.24320 1081 t x - - 1.39439 1.40072 1.40186 1.34916 0.04141 3.82736 3.97406 1.27797 0.32657 1.05169 0.42978 69 2.30274 2.95739 0.24176 2.76754 1093 g x - - 1.38591 1.38591 1.38745 1.38591 0.03131 4.20335 4.14281 1.46244 0.26354 1.07083 0.41965 70 2.79994 0.28200 2.99446 2.00361 1097 c x - - 1.38629 1.38629 1.38629 1.38629 0.02990 4.21806 4.21806 1.46634 0.26236 1.08730 0.41117 71 0.32186 2.49114 2.38278 2.30165 1098 a x - - 1.38095 1.38549 1.38906 1.38970 0.03114 4.15948 4.19672 1.44935 0.26752 1.10226 0.40364 72 2.53966 0.34721 2.53815 1.99924 1103 c x - - 1.38409 1.38783 1.38783 1.38544 0.03178 4.15601 4.15995 1.42823 0.27409 1.09282 0.40837 73 2.68662 0.27379 2.88246 2.15931 1105 c x - - 1.38629 1.38629 1.38629 1.38629 0.03005 4.21307 4.21307 1.46634 0.26236 1.09252 0.40852 74 0.31501 2.49904 2.40066 2.32899 1106 a x - - 1.38629 1.38629 1.38629 1.38629 0.03236 4.20966 4.07504 1.46634 0.26236 1.09567 0.40694 75 0.36972 2.41288 2.17350 2.24680 1107 a x - - 1.38629 1.38629 1.38629 1.38629 0.03061 4.19489 4.19489 1.46634 0.26236 1.07976 0.41503 76 2.42454 0.36916 2.67422 1.88910 1108 c x - - 1.38629 1.38629 1.38629 1.38629 0.03111 4.17876 4.17876 1.46634 0.26236 1.09861 0.40547 77 2.40209 0.35459 2.62494 1.99827 1109 c x - - 1.38629 1.38629 1.38629 1.38629 0.03189 4.15446 4.15446 1.46634 0.26236 1.09861 0.40547 78 2.61838 2.21121 2.70403 0.28691 1110 t x - - 1.38629 1.38629 1.38629 1.38629 0.03345 4.10748 4.10748 1.46634 0.26236 1.09861 0.40547 79 0.16677 3.16394 2.79540 2.99064 1111 a x - - 1.38629 1.38629 1.38629 1.38629 0.03607 4.03354 4.03354 1.46634 0.26236 1.09861 0.40547 80 0.12738 3.34162 3.14941 3.18577 1112 a x - - 1.38629 1.38629 1.38629 1.38629 0.01820 4.01567 * 1.46634 0.26236 0.00000 * //