Mercurial > repos > iuc > hmmer_hmmbuild

view test-data/MADE1.out.tblout @ 4:d0875d3f6544 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:52:17 -0400
parents fb8582aff5db
children 750269125dc9
line wrap: on
line source

#                                                                         --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession   query name                    accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#-------------------  ----------          -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
MADE1                DF0000629.2 humanchr1/239220001-239550000 -            5.7e-18   51.8  27.9     2e-12   34.1   0.7   9.6   5   0   0   5   5   5   2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.2 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /tmp/tmpp4O0Ju/files/000/dataset_20.dat
# Target file:     localref.hmm
# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat 
# Current dir:     /tmp/tmpp4O0Ju/job_working_directory/000/21/working
# Date:            Fri Jun  8 12:17:53 2018
# [ok]