# HG changeset patch # User iuc # Date 1528746737 14400 # Node ID d0875d3f65448844baa1f4f806a248ddce6ea872 # Parent 7ea31fc353949ed218c95d0f8dd7d4fda0407290 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d diff -r 7ea31fc35394 -r d0875d3f6544 macros.xml --- a/macros.xml Sat Apr 07 03:51:18 2018 -0400 +++ b/macros.xml Mon Jun 11 15:52:17 2018 -0400 @@ -6,7 +6,7 @@ - 3.1b2 + 3.2 diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.hmm --- a/test-data/MADE1.hmm Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.hmm Mon Jun 11 15:52:17 2018 -0400 @@ -1,264 +1,267 @@ -HMMER3/f [3.1b2 | February 2015] +HMMER3/f [3.2 | June 2018] NAME MADE1 ACC DF0000629.2 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon LENG 80 -MAXL 425 +MAXL 369 ALPH DNA RF yes MM no CONS yes CS no MAP yes -DATE Sat Jun 25 17:24:24 2016 +DATE Fri Jun 8 12:16:29 2018 NSEQ 1997 EFFN 3.911818 CKSUM 3015610723 +GA 15.98 +TC 32.00 +NC 15.90 STATS LOCAL MSV -8.5408 0.71858 -STATS LOCAL VITERBI -9.6224 0.71858 -STATS LOCAL FORWARD -3.4150 0.71858 +STATS LOCAL VITERBI -9.6095 0.71858 +STATS LOCAL FORWARD -3.4185 0.71858 HMM A C G T m->m m->i m->d i->m i->i d->m d->d - COMPO 1.24533 1.59094 1.62722 1.16493 + COMPO 1.24273 1.59618 1.63103 1.16152 1.38629 1.38629 1.38629 1.38629 - 0.21058 4.11281 1.75146 1.46634 0.26236 0.00000 * + 0.03960 3.94183 3.94183 1.46634 0.26236 0.00000 * 1 2.69765 2.44396 2.81521 0.24089 1 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.03960 3.94183 3.94183 1.46634 0.26236 1.10301 0.40327 + 0.03960 3.94183 3.94183 1.46634 0.26236 1.09861 0.40547 2 2.72939 2.37873 2.85832 0.24244 2 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.03725 4.00179 4.00179 1.46634 0.26236 1.21367 0.35255 + 0.03725 4.00179 4.00179 1.46634 0.26236 1.09861 0.40547 3 0.16099 3.16370 2.87328 2.99734 3 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.03604 4.03416 4.03416 1.46634 0.26236 1.32877 0.30762 + 0.03604 4.03416 4.03416 1.46634 0.26236 1.09861 0.40547 4 1.98862 2.42132 0.42649 2.10770 4 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03539 4.05203 4.05203 1.46634 0.26236 1.35213 0.29933 + 0.03539 4.05203 4.05203 1.46634 0.26236 1.09861 0.40547 5 1.96369 2.69532 0.36534 2.32099 5 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03764 4.06427 3.92372 1.46634 0.26236 1.00259 0.45717 + 0.03764 4.06427 3.92372 1.46634 0.26236 1.09861 0.40547 6 2.56994 2.11239 2.71946 0.30571 6 t x - - 1.37159 1.41129 1.39124 1.37159 - 0.03806 3.89715 4.07214 1.50442 0.25122 1.12269 0.39364 + 0.03806 3.89715 4.07214 1.48830 0.25587 1.07889 0.41548 7 2.58388 2.10353 2.64646 0.31253 12 t x - - 1.38764 1.38524 1.38764 1.38465 - 0.03494 4.03864 4.09125 1.40070 0.28293 1.44046 0.27026 + 0.03494 4.03864 4.09125 1.43264 0.27270 1.09736 0.40609 8 2.18552 2.70201 0.28821 2.64645 14 g x - - 1.38629 1.38629 1.38629 1.38629 - 0.03628 4.09157 3.96779 1.46634 0.26236 1.26997 0.32967 + 0.03628 4.09157 3.96779 1.46634 0.26236 1.09861 0.40547 9 2.16916 2.82142 0.28427 2.60854 15 g x - - 1.38091 1.39033 1.38365 1.39033 - 0.03566 4.00237 4.08886 1.38021 0.28972 1.26961 0.32981 + 0.03566 4.00237 4.08886 1.42105 0.27636 1.08174 0.41401 10 2.45517 2.15232 2.42886 0.34277 18 t x - - 1.39065 1.39065 1.39065 1.37335 - 0.03536 4.01212 4.09576 1.39554 0.28462 1.25024 0.33748 + 0.03536 4.01212 4.09576 1.42916 0.27379 1.09844 0.40555 11 2.10260 2.95484 0.28160 2.64222 21 g x - - 1.36740 1.40555 1.40555 1.36740 - 0.03843 3.92069 4.02468 1.44733 0.26814 1.15789 0.37709 + 0.03843 3.92069 4.02468 1.45555 0.26562 1.09860 0.40547 12 2.54740 0.30185 2.61355 2.21647 26 c x - - 1.38748 1.38276 1.38748 1.38748 - 0.03457 4.05446 4.09623 1.40847 0.28040 1.17686 0.36852 + 0.03457 4.05446 4.09623 1.43672 0.27142 1.08954 0.41003 13 0.28443 2.72003 2.32214 2.48149 28 a x - - 1.38740 1.38740 1.38298 1.38740 - 0.03441 4.05976 4.10001 1.41198 0.27926 0.97690 0.47237 + 0.03441 4.05976 4.10001 1.43856 0.27085 1.09845 0.40555 14 0.29412 2.55413 2.49679 2.35701 30 a x - - 1.38194 1.39067 1.38194 1.39067 - 0.03505 4.02482 4.10005 1.39522 0.28473 1.16906 0.37202 + 0.03505 4.02482 4.10005 1.42899 0.27385 1.09875 0.40540 15 0.18837 2.99710 2.82270 2.77556 33 a x - - 1.39015 1.39472 1.37503 1.38539 - 0.03725 3.97815 4.02618 1.37955 0.28994 1.16870 0.37218 + 0.03725 3.97815 4.02618 1.41936 0.27690 1.09910 0.40522 16 0.50816 2.05151 2.22111 1.82407 37 a x - - 1.36727 1.38730 1.39683 1.39405 - 0.04830 3.89881 3.61610 1.29026 0.32186 1.08301 0.41336 + 0.04830 3.89881 3.61610 1.36783 0.29391 1.08909 0.41026 17 2.11260 2.73141 0.29747 2.64152 41 g x - - 1.36913 1.40376 1.40376 1.36913 - 0.03705 3.93681 4.08299 1.44872 0.26771 1.09472 0.40742 + 0.03705 3.93681 4.08299 1.45644 0.26535 1.09300 0.40828 18 2.24459 1.90539 2.34054 0.43234 46 t x - - 1.33632 1.42493 1.39937 1.38665 - 0.04427 3.64574 4.06297 1.70501 0.20061 1.19872 0.35894 + 0.04427 3.64574 4.06297 1.63077 0.21788 1.12291 0.39354 19 0.44322 2.17202 2.18055 2.03175 57 a x - - 1.41047 1.41471 1.36338 1.35797 - 0.03970 3.81957 4.07540 1.65588 0.21186 1.24390 0.34004 + 0.03970 3.81957 4.07540 1.58572 0.22916 1.12604 0.39203 20 0.33340 2.42691 2.40824 2.25160 66 a x - - 1.29389 1.44615 1.37917 1.43324 - 0.04223 3.70146 4.09459 1.55158 0.23815 1.01872 0.44794 + 0.04223 3.70146 4.09459 1.52224 0.24619 1.08955 0.41003 21 2.50563 1.98543 2.69600 0.33746 74 t x - - 1.39462 1.39462 1.42862 1.32990 - 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705 + 0.04184 3.80216 3.98177 1.68754 0.20454 1.07729 0.41630 22 2.54484 1.97505 2.66483 0.33806 84 t x - - 1.39134 1.39489 1.38662 1.37246 - 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572 + 0.03877 3.97504 3.95038 1.41745 0.27751 1.10706 0.40127 23 2.10159 2.83856 0.29282 2.61635 88 g x - - 1.39682 1.39682 1.35536 1.39682 - 0.05046 3.75402 3.65808 1.08330 0.41321 1.13019 0.39004 + 0.05046 3.75402 3.65808 1.24245 0.34063 1.10542 0.40208 24 2.25298 0.61854 2.50691 1.29221 90 c x - - 1.35803 1.49605 1.46737 1.24379 - 0.06091 3.28322 3.83564 1.89752 0.16245 1.28788 0.32276 + 0.06091 3.28322 3.83564 1.80825 0.17906 1.14129 0.38479 25 1.27819 2.23285 0.76242 1.91259 106 g x - - 1.29024 1.67349 1.68279 1.04597 - 0.05752 3.44263 3.73311 2.58671 0.07825 1.26818 0.33037 + 0.05752 3.44263 3.73311 2.37512 0.09762 1.13899 0.38587 26 1.86925 2.58352 0.39466 2.33986 131 g x - - 1.31084 1.49412 1.46666 1.29002 - 0.04698 3.54257 4.07715 2.25245 0.11109 0.86163 0.54900 + 0.04698 3.54257 4.07715 2.06694 0.13533 1.02968 0.44180 27 2.38297 1.93394 2.39162 0.39800 151 t x - - 1.33582 1.47359 1.44163 1.30411 - 0.04951 3.48445 4.03783 2.15951 0.12260 1.21681 0.35122 + 0.04951 3.48445 4.03783 2.00196 0.14511 1.12431 0.39286 28 2.41717 2.17810 2.62774 0.32113 170 t x - - 1.36805 1.48060 1.37439 1.32840 - 0.04849 3.50958 4.05014 2.58370 0.07850 1.22399 0.34822 + 0.04849 3.50958 4.05014 2.35966 0.09922 1.12592 0.39208 29 2.57764 2.35132 2.56552 0.28512 194 t x - - 1.43829 1.43458 1.24787 1.43829 - 0.04667 3.56670 4.05428 2.49706 0.08591 1.23744 0.34267 + 0.04667 3.56670 4.05428 2.27140 0.10889 1.12876 0.39073 30 2.47248 2.07688 2.62257 0.33172 215 t x - - 1.25120 1.52623 1.70635 1.15531 - 0.08932 3.31524 3.01336 2.81842 0.06156 1.22909 0.34610 + 0.08932 3.31524 3.01336 2.61336 0.07611 1.12714 0.39150 31 2.25937 2.13157 2.02027 0.43957 248 t x - - 1.18172 1.43522 1.72841 1.28150 - 0.07936 2.93117 3.77395 2.46269 0.08906 0.60457 0.79034 + 0.07936 2.93117 3.77395 2.34189 0.10109 0.91545 0.51138 32 2.04508 2.84981 0.30490 2.58263 280 g x - - 1.17665 1.66785 1.66218 1.16056 - 0.05998 3.23615 3.96853 2.83684 0.06040 1.01952 0.44749 + 0.05998 3.23615 3.96853 2.64545 0.07362 1.07884 0.41550 33 2.45103 0.38098 2.56776 1.87147 317 c x - - 1.24153 1.52524 1.60663 1.22783 - 0.05538 3.39046 3.90294 2.73920 0.06680 1.18729 0.36391 + 0.05538 3.39046 3.90294 2.52486 0.08346 1.11838 0.39573 34 2.22082 0.36258 2.75077 2.02704 347 c x - - 1.15008 1.62014 1.86511 1.10673 - 0.06086 3.18178 4.04341 2.94504 0.05403 1.25991 0.33363 + 0.06086 3.18178 4.04341 2.75736 0.06556 1.13451 0.38799 35 0.27033 2.66664 2.52541 2.43767 388 a x - - 1.24951 1.47565 1.41392 1.42074 - 0.07123 3.00373 3.95552 3.13655 0.04440 1.28173 0.32512 + 0.07123 3.00373 3.95552 2.97118 0.05260 1.13905 0.38584 36 2.83107 2.41670 2.97197 0.22235 439 t x - - 1.37071 1.57683 1.38637 1.23972 - 0.05293 3.45216 3.91807 2.54402 0.08181 1.14651 0.38235 + 0.05293 3.45216 3.91807 2.33621 0.10169 1.11003 0.39980 37 2.52322 2.25084 2.45909 0.31611 465 t x - - 1.26335 1.55077 1.59008 1.19965 - 0.07504 3.13329 3.55006 3.08962 0.04659 1.13108 0.38962 + 0.07504 3.13329 3.55006 2.90286 0.05643 1.10636 0.40161 38 0.45807 2.30687 1.98940 2.03143 512 a x - - 1.15472 1.67511 1.53797 1.26320 - 0.09820 3.13076 2.99876 2.79197 0.06326 1.39915 0.28343 + 0.09820 3.13076 2.99876 2.62156 0.07547 1.16981 0.37168 39 2.37471 0.42180 2.44763 1.80427 550 c x - - 1.23785 1.49058 1.48364 1.35502 - 0.06081 3.19472 4.01643 2.41851 0.09327 0.94671 0.49105 + 0.06081 3.19472 4.01643 2.26388 0.10975 1.04403 0.43391 40 2.32826 1.95481 2.36781 0.40458 578 t x - - 1.36586 1.46001 1.43000 1.29720 - 0.05257 3.39673 4.03256 1.84862 0.17133 1.40979 0.27997 + 0.05257 3.39673 4.03256 1.75730 0.18936 1.17882 0.36765 41 2.68669 2.13935 2.81520 0.28200 592 t x - - 1.34965 1.42793 1.45781 1.31633 - 0.04735 3.57826 3.99988 2.09424 0.13144 1.22129 0.34934 + 0.04735 3.57826 3.99988 1.93109 0.15664 1.13176 0.38929 42 2.55904 2.16444 2.70859 0.29952 609 t x - - 1.12072 1.61936 1.63578 1.26895 - 0.07346 3.25910 3.42962 2.85641 0.05919 1.38363 0.28857 + 0.07346 3.25910 3.42962 2.65714 0.07273 1.16768 0.37264 43 1.99923 1.61027 2.26343 0.57851 646 t x - - 1.32290 1.58747 1.61095 1.11018 - 0.06656 3.08568 3.97944 2.44774 0.09046 0.75593 0.63407 + 0.06656 3.08568 3.97944 2.30872 0.10468 0.98144 0.46964 44 0.23887 2.79899 2.55209 2.60783 675 a x - - 1.18557 1.50323 1.59070 1.31590 - 0.05597 3.38637 3.88222 2.46900 0.08847 1.27945 0.32599 + 0.05597 3.38637 3.88222 2.28298 0.10756 1.13989 0.38545 45 0.29593 2.53488 2.53903 2.32335 701 a x - - 1.08710 1.54222 1.59276 1.40430 - 0.07539 2.94521 3.91062 1.91623 0.15918 1.22327 0.34852 + 0.07539 2.94521 3.91062 1.84934 0.17119 1.12860 0.39080 46 2.58352 2.40524 2.76700 0.25955 725 t x - - 1.19685 1.58503 1.74852 1.14293 - 0.06124 3.18279 4.02089 2.82961 0.06085 1.05474 0.42814 + 0.06124 3.18279 4.02089 2.64816 0.07341 1.08734 0.41115 47 2.13251 2.88788 0.29508 2.50964 764 g x - - 1.20891 1.55463 1.68206 1.19000 - 0.06526 3.12574 3.94910 2.41448 0.09367 1.10396 0.40280 + 0.06526 3.12574 3.94910 2.27651 0.10830 1.09988 0.40483 48 2.23841 2.99164 0.25118 2.72900 792 g x - - 1.26330 1.55339 1.52606 1.24355 - 0.05464 3.34968 4.01313 2.78872 0.06347 1.15133 0.38012 + 0.05464 3.34968 4.01313 2.57858 0.07891 1.11066 0.39949 49 2.57533 0.32900 2.64632 2.01501 824 c x - - 1.35118 1.39828 1.40141 1.39516 - 0.04340 3.79297 3.91506 1.59549 0.22666 1.20075 0.35806 + 0.04340 3.79297 3.91506 1.54788 0.23914 1.12122 0.39435 50 0.46433 2.04127 2.23437 2.00605 833 a x - - 1.23062 1.36903 1.62282 1.36182 - 0.05764 3.31530 3.92762 2.28791 0.10700 1.07910 0.41536 + 0.05764 3.31530 3.92762 2.13660 0.12563 1.09396 0.40780 51 0.27513 2.77017 2.28518 2.57549 853 a x - - 1.27958 1.58726 1.46109 1.25394 - 0.05750 3.30072 3.96214 2.60776 0.07656 1.25708 0.33475 + 0.05750 3.30072 3.96214 2.42368 0.09277 1.13333 0.38855 52 0.20149 2.86434 2.84551 2.69770 883 a x - - 1.23645 1.62259 1.71174 1.10368 - 0.05756 3.26729 4.02702 2.54508 0.08172 1.27391 0.32814 + 0.05756 3.26729 4.02702 2.37267 0.09787 1.13770 0.38648 53 0.26982 2.65833 2.50477 2.46835 911 a x - - 1.36005 1.50358 1.48100 1.22550 - 0.06921 3.37553 3.42118 2.36646 0.09851 1.27560 0.32748 + 0.06921 3.37553 3.42118 2.19529 0.11802 1.13826 0.38622 54 0.40022 2.19284 2.22687 2.20396 934 a x - - 1.12070 1.60472 1.53213 1.35895 - 0.05523 3.36752 3.94966 2.42917 0.09224 0.84774 0.55928 + 0.05523 3.36752 3.94966 2.24890 0.11151 1.02145 0.44640 55 2.11356 0.46400 2.46442 1.79955 960 c x - - 1.23932 1.35913 1.50478 1.46331 - 0.05187 3.47055 3.94022 2.35854 0.09933 1.12102 0.39445 + 0.05187 3.47055 3.94022 2.17140 0.12106 1.10399 0.40279 56 1.85868 0.79440 2.22069 1.25971 983 c x - - 1.21951 1.50212 1.51138 1.34185 - 0.06404 3.29054 3.69705 1.75742 0.18933 1.18410 0.36532 + 0.06404 3.29054 3.69705 1.69351 0.20318 1.11833 0.39575 57 1.33272 2.32720 0.71452 1.90215 999 g x - - 1.12229 1.49343 1.56653 1.42255 - 0.04920 3.46654 4.08749 2.17995 0.11996 1.31769 0.31164 + 0.04920 3.46654 4.08749 2.02027 0.14228 1.15003 0.38072 58 2.48337 0.43652 2.46331 1.68683 1017 c x - - 1.34704 1.55461 1.38112 1.28222 - 0.04823 3.61532 3.90311 2.20911 0.11631 1.00864 0.45368 + 0.04823 3.61532 3.90311 2.01908 0.14246 1.07530 0.41733 59 0.41659 2.44509 1.93972 2.20507 1034 a x - - 1.38198 1.38198 1.39194 1.38932 - 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325 + 0.03641 3.98130 4.06929 1.40885 0.28028 1.14581 0.38268 60 0.41612 2.39160 1.97116 2.21075 1037 a x - - 1.03649 1.46430 1.57421 1.57557 - 0.04787 3.52599 4.05584 2.32461 0.10294 0.84329 0.56263 + 0.04769 3.52580 4.06641 2.13225 0.12621 1.03124 0.44093 61 2.66264 2.12302 2.82746 0.28581 1056 t x - - 1.36925 1.39635 1.38930 1.39048 - 0.04103 3.97406 3.84419 1.39433 0.28502 1.12555 0.39227 + 0.04097 3.97400 3.84718 1.42709 0.27444 1.10349 0.40304 62 2.26510 2.13196 2.42551 0.37231 1060 t x - - 1.37965 1.39147 1.39147 1.38264 - 0.04136 3.91664 3.88204 1.24613 0.33914 0.95630 0.48501 + 0.04082 3.91610 3.90805 1.34598 0.30149 1.06394 0.42326 63 0.41244 2.25761 2.16787 2.12907 1062 a x - - 1.34515 1.41203 1.41203 1.37753 - 0.04086 3.77867 4.06371 1.30483 0.31638 1.13245 0.38897 + 0.04054 3.77835 4.08203 1.36896 0.29353 1.10284 0.40336 64 2.51464 0.37905 2.62296 1.82008 1068 c x - - 1.39543 1.38753 1.39233 1.37008 - 0.03884 3.90614 4.01884 1.36573 0.29463 1.15716 0.37743 + 0.03854 3.90584 4.03535 1.40940 0.28010 1.10667 0.40146 65 2.16380 2.11332 2.18714 0.42765 1073 t x - - 1.38764 1.38471 1.38519 1.38764 - 0.03603 4.05405 4.01529 1.40080 0.28289 1.06383 0.42332 + 0.03575 4.05376 4.03073 1.43270 0.27268 1.08530 0.41219 66 2.79349 2.39141 2.87271 0.23478 1075 t x - - 1.37227 1.39101 1.39101 1.39101 - 0.03884 4.01734 3.90722 1.39017 0.28639 1.09574 0.40690 + 0.03597 4.01447 4.05827 1.42619 0.27473 1.09128 0.40915 67 2.82488 2.47749 2.93179 0.21887 1078 t x - - 1.38141 1.39112 1.38915 1.38353 - 0.03675 3.99492 4.03549 1.35958 0.29675 1.21867 0.35044 + 0.03661 3.99477 4.04370 1.40962 0.28003 1.10594 0.40182 68 2.77679 2.30433 2.90694 0.24425 1081 t x - - 1.37593 1.38989 1.45520 1.32825 - 0.04566 3.68855 3.93098 1.76176 0.18843 1.07133 0.41939 + 0.04447 3.68736 3.99242 1.66809 0.20900 1.07378 0.41811 69 2.47698 3.17398 0.19595 2.95437 1093 g x - - 1.38264 1.38264 1.39734 1.38264 - 0.05482 3.96677 3.36946 1.40348 0.28202 1.13963 0.38557 + 0.05358 3.96553 3.40487 1.43194 0.27292 1.08430 0.41270 70 2.84327 0.27906 2.97336 2.00890 1097 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03475 4.08873 4.05197 1.46634 0.26236 0.79234 0.60291 + 0.03412 4.08811 4.08811 1.46634 0.26236 0.97936 0.47089 71 0.21870 2.83638 2.69251 2.65798 1098 a x - - 1.37446 1.37942 1.39640 1.39509 - 0.04066 3.94379 3.88865 1.41905 0.27700 1.24551 0.33939 + 0.03670 3.93983 4.09935 1.43996 0.27041 1.09889 0.40532 72 2.35233 0.46085 2.23804 1.78715 1103 c x - - 1.38536 1.38781 1.38781 1.38421 - 0.03885 4.04214 3.88532 1.39310 0.28542 1.30851 0.31501 + 0.03493 4.03822 4.09272 1.42863 0.27396 1.09816 0.40569 73 2.57111 0.32543 2.74124 1.98892 1105 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.03403 4.09710 4.08422 1.46634 0.26236 1.37004 0.29316 + 0.03381 4.09688 4.09688 1.46634 0.26236 1.09814 0.40570 74 0.27014 2.61416 2.53262 2.47636 1106 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.03889 4.09695 3.83874 1.46634 0.26236 1.37489 0.29151 + 0.03461 4.09267 4.05587 1.46634 0.26236 1.09839 0.40558 75 0.52873 2.16549 1.91736 1.90409 1107 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.04237 4.09207 3.69758 1.46634 0.26236 1.41112 0.27954 + 0.03426 4.08396 4.08396 1.46634 0.26236 1.09364 0.40796 76 2.33134 0.38082 2.65861 1.90055 1108 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.04659 4.08459 3.55121 1.46634 0.26236 1.54765 0.23921 + 0.03466 4.07266 4.07266 1.46634 0.26236 1.09861 0.40547 77 2.20588 0.45134 2.35553 1.84373 1109 c x - - 1.38629 1.38629 1.38629 1.38629 - 0.05904 4.07266 3.21140 1.46634 0.26236 1.68734 0.20458 + 0.03550 4.04912 4.04912 1.46634 0.26236 1.09861 0.40547 78 2.69018 2.22054 2.82311 0.26898 1110 t x - - 1.38629 1.38629 1.38629 1.38629 - 0.08061 4.04912 2.81320 1.46634 0.26236 1.91269 0.15980 + 0.03711 4.00561 4.00561 1.46634 0.26236 1.09861 0.40547 79 0.16248 3.15867 2.86159 2.98963 1111 a x - - 1.38629 1.38629 1.38629 1.38629 - 0.12592 4.00561 2.30158 1.46634 0.26236 2.22059 0.11490 + 0.04048 3.92018 3.92018 1.46634 0.26236 1.09861 0.40547 80 0.17484 3.04770 2.86638 2.88183 1112 a x - - 1.38629 1.38629 1.38629 1.38629 0.02045 3.90014 * 1.46634 0.26236 0.00000 * diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.nhmmscan_out --- a/test-data/MADE1.nhmmscan_out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.nhmmscan_out Mon Jun 11 15:52:17 2018 -0400 @@ -1,12 +1,12 @@ # nhmmscan :: search DNA sequence(s) against a DNA profile database -# HMMER 3.1b2 (February 2015); http://hmmer.org/ -# Copyright (C) 2015 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: /tmp/tmpc_c3amjg/files/000/dataset_2.dat -# target HMM database: /tmp/tmpc_c3amjg/files/000/dataset_1.dat -# per-seq hits tabular output: /tmp/tmpc_c3amjg/files/000/dataset_4.dat -# hits output in Dfam format: /tmp/tmpc_c3amjg/files/000/dataset_5.dat +# query sequence file: /tmp/tmpp4O0Ju/files/000/dataset_41.dat +# target HMM database: localref.hmm +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_43.dat +# hits output in Dfam format: /tmp/tmpp4O0Ju/files/000/dataset_44.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 @@ -18,35 +18,35 @@ Scores for complete hit: E-value score bias Model start end Description ------- ------ ----- -------- ----- ----- ----------- - 1.2e-10 38.6 7.4 MADE1 302390 302466 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon - 7.8e-08 29.6 8.3 MADE1 174456 174498 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon - 1.2e-07 28.9 6.0 MADE1 302466 302390 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon - 7.2e-06 23.3 7.0 MADE1 174493 174456 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 8.7e-11 39.2 7.4 MADE1 302390 302466 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 6.4e-08 30.0 8.3 MADE1 174456 174498 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 9.3e-08 29.5 6.1 MADE1 302466 302390 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 6.3e-06 23.7 7.0 MADE1 174493 174456 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon ------ inclusion threshold ------ - 1.4 6.3 7.0 MADE1 304073 304104 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 1.4 6.5 7.0 MADE1 304073 304104 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon Annotation for each hit (and alignments): >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to mod len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 38.6 7.4 1.2e-10 4 80 .] 302390 302466 .. 302387 302466 .. 80 0.87 + ! 39.2 7.4 8.7e-11 4 80 .] 302390 302466 .. 302387 302466 .. 80 0.87 Alignment: - score: 38.6 bits + score: 39.2 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 4 ggttggtgcaaaagtaattgcggtttttgccattacttttaatggc....aaaaaccgcaattacttttgcaccaacctaa 80 - ggt ggtgcaaaa aattg ggtttttgccatt cttttaat gc a aaa g a t ctttt caccaa ctaa - humanchr1/239220001-239550000 302390 GGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCttttA-AAA--GTA-ATGCTTTTACACCAATCTAA 302466 - 899******************************************955533.443..334.4689***********99986 PP + ggt ggtgcaaaa aattg ggtttttgccatt cttttaat gc a aaa g a t ctttt caccaa ctaa + humanchr1/239220001-239550000 302390 GGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCttttA-AAA--GT-AATGCTTTTACACCAATCTAA 302466 + 899******************************************955533.443..33.44689************9986 PP >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to mod len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 29.6 8.3 7.8e-08 1 43 [. 174456 174498 .. 174456 174518 .. 80 0.92 + ! 30.0 8.3 6.4e-08 1 43 [. 174456 174498 .. 174456 174518 .. 80 0.92 Alignment: - score: 29.6 bits + score: 30.0 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt 43 ttaggtt gtgcaaaagtaattg ggtttttg cattactttt @@ -56,36 +56,36 @@ >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to mod len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 28.9 6.0 1.2e-07 1 77 [. 302466 302390 .. 302466 302387 .. 80 0.74 + ! 29.5 6.1 9.3e-08 1 77 [. 302466 302390 .. 302466 302387 .. 80 0.74 Alignment: - score: 28.9 bits + score: 29.5 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt................aatggcaaaaaccgcaattacttttgcaccaacc 77 ttag ttggtg aaaag cattactttt aatggcaaaaacc caatt ttttgcacc acc humanchr1/239220001-239550000 302466 TTAGATTGGTGTAAAAG----------------CATTACTTTTaaaagcaattaaaagcAATGGCAAAAACCACAATTGATTTTGCACCGACC 302390 - 68999999999999998................5666777776222222222222222268****************************9998 PP + 68999999999999998................4666777765222222222222222268****************************9998 PP >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to mod len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 23.3 7.0 7.2e-06 43 80 .] 174493 174456 .. 174513 174456 .. 80 0.91 + ! 23.7 7.0 6.3e-06 43 80 .] 174493 174456 .. 174513 174456 .. 80 0.91 Alignment: - score: 23.3 bits + score: 23.7 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 43 taatggcaaaaaccgcaattacttttgcaccaacctaa 80 taatg caaaaacc caattacttttgcac aacctaa humanchr1/239220001-239550000 174493 TAATGACAAAAACCACAATTACTTTTGCACTAACCTAA 174456 - 689********************************985 PP + 689********************************986 PP >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to mod len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ? 6.3 7.0 1.4 41 72 .. 304073 304104 .. 304053 304109 .. 80 0.85 + ? 6.5 7.0 1.4 41 72 .. 304073 304104 .. 304053 304109 .. 80 0.85 Alignment: - score: 6.3 bits + score: 6.5 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 41 tttaatggcaaaaaccgcaattacttttgcac 72 tt a tgg aaaaa ca tta ttttgca @@ -98,12 +98,12 @@ ------------------------------------- Query sequence(s): 1 (660000 residues searched) Target model(s): 1 (80 nodes) -Residues passing SSV filter: 61794 (0.0936); expected (0.02) -Residues passing bias filter: 46199 (0.07); expected (0.02) -Residues passing Vit filter: 2752 (0.00417); expected (0.001) -Residues passing Fwd filter: 2526 (0.00383); expected (1e-05) -Total number of hits: 5 (0.000405) +Residues passing SSV filter: 63737 (0.0966); expected (0.02) +Residues passing bias filter: 44695 (0.0677); expected (0.02) +Residues passing Vit filter: 2309 (0.0035); expected (0.001) +Residues passing Fwd filter: 2041 (0.00309); expected (1e-05) +Total number of hits: 5 (0.000405) # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 -# Mc/sec: 2640.00 +# Mc/sec: 2407.09 // [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.nhmmscan_out.aliscoresout --- a/test-data/MADE1.nhmmscan_out.aliscoresout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.nhmmscan_out.aliscoresout Mon Jun 11 15:52:17 2018 -0400 @@ -1,17 +1,17 @@ # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 1.2e-10 38.6 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 7.8e-08 29.6 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 1.2e-07 28.9 6.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 7.2e-06 23.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 8.7e-11 39.2 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 6.4e-08 30.0 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 9.3e-08 29.5 6.1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 6.3e-06 23.7 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.5 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SCAN -# Query file: /tmp/tmpc_c3amjg/files/000/dataset_2.dat -# Target file: /tmp/tmpc_c3amjg/files/000/dataset_1.dat -# Option settings: nhmmscan --tblout /tmp/tmpc_c3amjg/files/000/dataset_4.dat --dfamtblout /tmp/tmpc_c3amjg/files/000/dataset_5.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 /tmp/tmpc_c3amjg/files/000/dataset_1.dat /tmp/tmpc_c3amjg/files/000/dataset_2.dat -# Current dir: /tmp/tmpc_c3amjg/job_working_directory/000/3/working -# Date: Wed Apr 4 16:58:45 2018 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_41.dat +# Target file: localref.hmm +# Option settings: nhmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_43.dat --dfamtblout /tmp/tmpp4O0Ju/files/000/dataset_44.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_41.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/33/working +# Date: Fri Jun 8 12:19:16 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.nhmmscan_out.dfamtblout --- a/test-data/MADE1.nhmmscan_out.dfamtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.nhmmscan_out.dfamtblout Mon Jun 11 15:52:17 2018 -0400 @@ -3,8 +3,8 @@ # # target name acc query name bits e-value bias hmm-st hmm-en strand ali-st ali-en env-st env-en modlen description of target # ------------------- ------------------- ------------------- ------ --------- ----- ------- ------- ------ ------- ------- ------- ------- ------- --------------------- -MADE1 DF0000629.2 humanchr1/239220001-239550000 38.6 1.2e-10 7.4 4 80 + 302390 302466 302387 302466 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 29.6 7.8e-08 8.3 1 43 + 174456 174498 174456 174518 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 28.9 1.2e-07 6.0 1 77 - 302466 302390 302466 302387 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 23.3 7.2e-06 7.0 43 80 - 174493 174456 174513 174456 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 6.3 1.4 7.0 41 72 + 304073 304104 304053 304109 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 39.2 8.7e-11 7.4 4 80 + 302390 302466 302387 302466 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 30.0 6.4e-08 8.3 1 43 + 174456 174498 174456 174518 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 29.5 9.3e-08 6.1 1 77 - 302466 302390 302466 302387 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 23.7 6.3e-06 7.0 43 80 - 174493 174456 174513 174456 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 6.5 1.4 7.0 41 72 + 304073 304104 304053 304109 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.nhmmscan_out.tblout --- a/test-data/MADE1.nhmmscan_out.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.nhmmscan_out.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,17 +1,17 @@ # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 1.2e-10 38.6 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 7.8e-08 29.6 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 1.2e-07 28.9 6.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 7.2e-06 23.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 8.7e-11 39.2 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 6.4e-08 30.0 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 9.3e-08 29.5 6.1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 6.3e-06 23.7 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.5 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SCAN -# Query file: /tmp/tmpc_c3amjg/files/000/dataset_2.dat -# Target file: /tmp/tmpc_c3amjg/files/000/dataset_1.dat -# Option settings: nhmmscan --tblout /tmp/tmpc_c3amjg/files/000/dataset_4.dat --dfamtblout /tmp/tmpc_c3amjg/files/000/dataset_5.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 /tmp/tmpc_c3amjg/files/000/dataset_1.dat /tmp/tmpc_c3amjg/files/000/dataset_2.dat -# Current dir: /tmp/tmpc_c3amjg/job_working_directory/000/3/working -# Date: Wed Apr 4 16:58:45 2018 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_41.dat +# Target file: localref.hmm +# Option settings: nhmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_43.dat --dfamtblout /tmp/tmpp4O0Ju/files/000/dataset_44.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_41.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/33/working +# Date: Fri Jun 8 12:19:16 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.out --- a/test-data/MADE1.out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.out Mon Jun 11 15:52:17 2018 -0400 @@ -1,13 +1,13 @@ # hmmscan :: search sequence(s) against a profile database -# HMMER 3.1b2 (February 2015); http://hmmer.org/ -# Copyright (C) 2015 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: /tmp/tmpYWzicI/files/000/dataset_20.dat -# target HMM database: /tmp/tmpYWzicI/files/000/dataset_19.dat -# per-seq hits tabular output: /tmp/tmpYWzicI/files/000/dataset_22.dat -# per-dom hits tabular output: /tmp/tmpYWzicI/files/000/dataset_23.dat -# pfam-style tabular hit output: /tmp/tmpYWzicI/files/000/dataset_24.dat +# query sequence file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# target HMM database: localref.hmm +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_22.dat +# per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_23.dat +# pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_24.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 @@ -20,54 +20,54 @@ --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- - 1e-17 51.0 28.5 2.7e-12 33.7 0.7 9.6 5 MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + 5.7e-18 51.8 27.9 2e-12 34.1 0.7 9.6 5 MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon Domain annotation for each model (and alignments): >> MADE1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ? -4.2 0.1 1 1 30 54 .. 80044 80068 .. 80030 80073 .. 0.80 + 1 ? -4.5 0.0 1 1 30 54 .. 80044 80068 .. 80033 80072 .. 0.81 2 ? -6.6 3.3 1 1 13 71 .. 154012 154072 .. 154011 154076 .. 0.75 - 3 ! 27.4 0.7 2.4e-10 2.4e-10 1 44 [. 174456 174514 .. 174456 174577 .. 0.62 - 4 ! 33.7 0.7 2.7e-12 2.7e-12 2 80 .] 302388 302466 .. 302387 302466 .. 0.86 - 5 ? 2.9 0.7 0.011 0.011 27 75 .. 304060 304107 .. 304021 304109 .. 0.61 + 3 ! 27.4 0.7 2.4e-10 2.4e-10 1 43 [. 174456 174498 .. 174456 174577 .. 0.66 + 4 ! 34.1 0.7 2e-12 2e-12 2 80 .] 302388 302466 .. 302387 302466 .. 0.86 + 5 ? 2.8 0.7 0.011 0.011 27 75 .. 304060 304107 .. 304022 304109 .. 0.62 Alignments for each domain: - == domain 1 score: -4.2 bits; conditional E-value: 1 + == domain 1 score: -4.5 bits; conditional E-value: 1 xxxxxxxxxxxxxxxxxxxxxxxxx RF - MADE1 30 ttgccattacttttaatggcaaaaa 54 + MADE1 30 ttgccattacttttaatggcaaaaa 54 t g catt ttt aatggcaaa a humanchr1/239220001-239550000 80044 TAGTCATTCATTTCAATGGCAAATA 80068 - 45789****************9966 PP + 457899***************9865 PP == domain 2 score: -6.6 bits; conditional E-value: 1 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - MADE1 13 aaaagtaattgcggtttttgccatt......acttttaatggcaaaaaccgcaattacttttgca 71 + MADE1 13 aaaagtaattgcggtttttgccatt......acttttaatggcaaaaaccgcaattacttttgca 71 aaaagta tt + ttttgc att a tttaa gcaaa a + tta tttgca humanchr1/239220001-239550000 154012 AAAAGTAGTTTTCAATTTTGCAATTtgaccaATATTTAAATGCAAATATT----TTATATTTGCA 154072 - 78999999999999999999999984444444457777777899998876....77777888876 PP + 78999999999999999999999984444444457777777899988765....67777778776 PP == domain 3 score: 27.4 bits; conditional E-value: 2.4e-10 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............x RF - MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt...............a 44 - ttaggtt gtgcaaaagtaattg+ggtttttg cattactttt a - humanchr1/239220001-239550000 174456 TTAGGTTAGTGCAAAAGTAATTGTGGTTTTTGTCATTACTTTTctgcatgctagaagtA 174514 - 79***************************************964443333333333330 PP + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt 43 + ttaggtt gtgcaaaagtaattg+ggtttttg cattactttt + humanchr1/239220001-239550000 174456 TTAGGTTAGTGCAAAAGTAATTGTGGTTTTTGTCATTACTTTT 174498 + 79**************************************996 PP - == domain 4 score: 33.7 bits; conditional E-value: 2.7e-12 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - MADE1 2 taggttggtgcaaaagtaattgcggtttttgccattacttttaatggcaaaaaccgcaattacttttgcaccaacctaa 80 - t ggt ggtgcaaaa aattg+ggtttttgccatt cttttaat gc a + a t ctttt caccaa ctaa - humanchr1/239220001-239550000 302388 TTGGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCTTTTAAAAGTAATGCTTTTACACCAATCTAA 302466 - 56899******************************************963333233345578**************996 PP + == domain 4 score: 34.1 bits; conditional E-value: 2e-12 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + MADE1 2 taggttggtgcaaaagtaattgcggtttttgccattacttttaatggca...aaaaccgcaattacttttgcaccaacctaa 80 + t ggt ggtgcaaaa aattg+ggtttttgccatt cttttaat gc aaaa g a t ctttt caccaa ctaa + humanchr1/239220001-239550000 302388 TTGGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCTtttAAAA--G-TAATGCTTTTACACCAATCTAA 302466 + 56899******************************************962223333..3.45578**************997 PP - == domain 5 score: 2.9 bits; conditional E-value: 0.011 + == domain 5 score: 2.8 bits; conditional E-value: 0.011 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - MADE1 27 tttttgccattacttttaatggcaaaaaccgcaattacttttgcaccaa 75 + MADE1 27 tttttgccattacttttaatggcaaaaaccgcaattacttttgcaccaa 75 tttt g c ta tt a tgg aaaaa ++ca tta ttttgca aa humanchr1/239220001-239550000 304060 TTTTAGACTATA-GTTAAGTGGGAAAAAATACACTTATTTTTGCATTAA 304107 - 222222222222.3455779************************98765 PP + 222223222222.3556779************************98765 PP @@ -81,7 +81,7 @@ Passed Fwd filter: 1 (1); expected 0.0 (1e-05) Initial search space (Z): 1 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] -# CPU time: 0.15u 0.00s 00:00:00.15 Elapsed: 00:00:00.16 -# Mc/sec: 165.00 +# CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.14 +# Mc/sec: 177.58 // [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.out.domtblout --- a/test-data/MADE1.out.domtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.out.domtblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,18 +1,18 @@ # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- -MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 1e-17 51.0 28.5 1 5 1 1 -4.2 0.1 30 54 80044 80068 80030 80073 0.80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 1e-17 51.0 28.5 2 5 1 1 -6.6 3.3 13 71 154012 154072 154011 154076 0.75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 1e-17 51.0 28.5 3 5 2.4e-10 2.4e-10 27.4 0.7 1 44 174456 174514 174456 174577 0.62 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 1e-17 51.0 28.5 4 5 2.7e-12 2.7e-12 33.7 0.7 2 80 302388 302466 302387 302466 0.86 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 1e-17 51.0 28.5 5 5 0.011 0.011 2.9 0.7 27 75 304060 304107 304021 304109 0.61 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 1 5 1 1 -4.5 0.0 30 54 80044 80068 80033 80072 0.81 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 2 5 1 1 -6.6 3.3 13 71 154012 154072 154011 154076 0.75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 3 5 2.4e-10 2.4e-10 27.4 0.7 1 43 174456 174498 174456 174577 0.66 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 4 5 2e-12 2e-12 34.1 0.7 2 80 302388 302466 302387 302466 0.86 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 5 5 0.011 0.011 2.8 0.7 27 75 304060 304107 304022 304109 0.62 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SCAN -# Query file: /tmp/tmpYWzicI/files/000/dataset_2.dat -# Target file: /tmp/tmpYWzicI/files/000/dataset_1.dat -# Option settings: hmmscan --tblout /tmp/tmpYWzicI/files/000/dataset_4.dat --domtblout /tmp/tmpYWzicI/files/000/dataset_5.dat --pfamtblout /tmp/tmpYWzicI/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpYWzicI/files/000/dataset_1.dat /tmp/tmpYWzicI/files/000/dataset_2.dat -# Current dir: /tmp/tmpYWzicI/job_working_directory/000/3 -# Date: Sat Jun 25 19:05:15 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Target file: localref.hmm +# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working +# Date: Fri Jun 8 12:17:53 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.out.pfamtblout --- a/test-data/MADE1.out.pfamtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.out.pfamtblout Mon Jun 11 15:52:17 2018 -0400 @@ -3,25 +3,25 @@ # # name bits E-value n exp bias description # ------------------- ------ --------- --- ----- ----- --------------------- -MADE1 51.0 1e-17 5 9.6 28.5 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 51.8 5.7e-18 5 9.6 27.9 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # Domain scores # ------------- # # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- -MADE1 33.7 2.7e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174514 1 44 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 2.9 0.011 5 0.7 304021 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon -MADE1 -4.2 1 1 0.1 80030 80073 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 34.1 2e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 2.8 0.011 5 0.7 304022 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 -4.5 1 1 0.0 80033 80072 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpYWzicI/files/000/dataset_2.dat -# Target file: /tmp/tmpYWzicI/files/000/dataset_1.dat -# Option settings: hmmscan --tblout /tmp/tmpYWzicI/files/000/dataset_4.dat --domtblout /tmp/tmpYWzicI/files/000/dataset_5.dat --pfamtblout /tmp/tmpYWzicI/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpYWzicI/files/000/dataset_1.dat /tmp/tmpYWzicI/files/000/dataset_2.dat -# Current dir: /tmp/tmpYWzicI/job_working_directory/000/3 -# Date: Sat Jun 25 19:05:15 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Target file: localref.hmm +# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working +# Date: Fri Jun 8 12:17:53 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/MADE1.out.tblout --- a/test-data/MADE1.out.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/MADE1.out.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,14 +1,14 @@ # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 7.1e-18 51.5 28.5 2e-12 34.0 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 5.7e-18 51.8 27.9 2e-12 34.1 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b1 (May 2013) +# Version: 3.2 (June 2018) # Pipeline mode: SCAN -# Query file: test-data/dna_target.fa -# Target file: test-data/MADE1.hmm -# Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa -# Current dir: /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer -# Date: Tue Feb 10 14:40:35 2015 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Target file: localref.hmm +# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working +# Date: Fri Jun 8 12:17:53 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/fn3.hmm --- a/test-data/fn3.hmm Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/fn3.hmm Mon Jun 11 15:52:17 2018 -0400 @@ -1,4 +1,4 @@ -HMMER3/f [3.1 | February 2013] +HMMER3/f [3.2 | June 2018] NAME fn3 ACC PF00041.13 DESC Fibronectin type III domain diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins-masked.sto --- a/test-data/globins-masked.sto Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins-masked.sto Mon Jun 11 15:52:17 2018 -0400 @@ -9,5 +9,5 @@ HBA_HUMAN ---------VLSPADKTNVKAAWGKVGA--HAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTNAVAHV---D--DMPNALSALSDLHAHKL--RVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR------ MYG_PHYCA ---------VLSEGEWQLVLHVWAKVEA--DVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK----K-GHHEAELKPLAQSHATKH--KIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG GLB5_PETMA PIVDTGSVAPLSAAEKTKIRSAWAPVYS--TYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASM--DDTEKMSMKLRDLSGKHAKSF--QVDPQYFKVLAAVIADTVAAG---------DAGFEKLMSMICILLRSAY------- -#=GC MM .................mmmmmmmmmmm...........mmmmmmmmmmm......................................................................................................................... +#=GC MM .................mmmmmmmmmmm............................................................................................................................................... // diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins.domtblout --- a/test-data/globins.domtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins.domtblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,15 +1,15 @@ # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- -sp|P02185|MYG_PHYCD - 154 globins4 - 149 1.8e-70 222.7 3.2 1 1 2e-70 2e-70 222.6 3.2 2 149 2 148 1 148 0.99 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 -sp|P02024|HBB_GORGO - 147 globins4 - 149 9.2e-69 217.2 0.1 1 1 1e-68 1e-68 217.0 0.1 1 149 2 147 2 147 0.99 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 +sp|P02185|MYG_PHYCD - 154 dataset_x - 149 1.8e-70 222.7 3.2 1 1 2e-70 2e-70 222.6 3.2 2 149 2 148 1 148 0.99 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 +sp|P02024|HBB_GORGO - 147 dataset_x - 149 9.2e-69 217.2 0.1 1 1 1e-68 1e-68 217.0 0.1 1 149 2 147 2 147 0.99 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: hmmsearch -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpJW6ntL/files/000/dataset_1.dat -# Target file: /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Option settings: hmmsearch --tblout /tmp/tmpJW6ntL/files/000/dataset_4.dat --domtblout /tmp/tmpJW6ntL/files/000/dataset_5.dat --pfamtblout /tmp/tmpJW6ntL/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpJW6ntL/files/000/dataset_1.dat /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Current dir: /tmp/tmpJW6ntL/job_working_directory/000/3 -# Date: Sat Jun 25 19:27:08 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Option settings: hmmsearch --tblout /tmp/tmpp4O0Ju/files/000/dataset_28.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_29.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_30.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_25.dat /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/24/working +# Date: Fri Jun 8 12:18:13 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins.pfamtblout --- a/test-data/globins.pfamtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins.pfamtblout Mon Jun 11 15:52:17 2018 -0400 @@ -15,11 +15,11 @@ sp|P02024|HBB_GORGO 217.0 1e-68 1 0.1 2 147 2 147 1 149 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: hmmsearch -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpJW6ntL/files/000/dataset_1.dat -# Target file: /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Option settings: hmmsearch --tblout /tmp/tmpJW6ntL/files/000/dataset_4.dat --domtblout /tmp/tmpJW6ntL/files/000/dataset_5.dat --pfamtblout /tmp/tmpJW6ntL/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpJW6ntL/files/000/dataset_1.dat /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Current dir: /tmp/tmpJW6ntL/job_working_directory/000/3 -# Date: Sat Jun 25 19:27:08 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Option settings: hmmsearch --tblout /tmp/tmpp4O0Ju/files/000/dataset_28.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_29.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_30.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_25.dat /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/24/working +# Date: Fri Jun 8 12:18:13 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins.tblout --- a/test-data/globins.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,15 +1,15 @@ # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- -sp|P02185|MYG_PHYCD - globins4 - 1.8e-70 222.7 3.2 2e-70 222.6 3.2 1.0 1 0 0 1 1 1 1 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 -sp|P02024|HBB_GORGO - globins4 - 9.2e-69 217.2 0.1 1e-68 217.0 0.1 1.0 1 0 0 1 1 1 1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 +sp|P02185|MYG_PHYCD - dataset_x - 1.8e-70 222.7 3.2 2e-70 222.6 3.2 1.0 1 0 0 1 1 1 1 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 +sp|P02024|HBB_GORGO - dataset_x - 9.2e-69 217.2 0.1 1e-68 217.0 0.1 1.0 1 0 0 1 1 1 1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: hmmsearch -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpJW6ntL/files/000/dataset_1.dat -# Target file: /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Option settings: hmmsearch --tblout /tmp/tmpJW6ntL/files/000/dataset_4.dat --domtblout /tmp/tmpJW6ntL/files/000/dataset_5.dat --pfamtblout /tmp/tmpJW6ntL/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpJW6ntL/files/000/dataset_1.dat /tmp/tmpJW6ntL/files/000/dataset_2.dat -# Current dir: /tmp/tmpJW6ntL/job_working_directory/000/3 -# Date: Sat Jun 25 19:27:08 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Option settings: hmmsearch --tblout /tmp/tmpp4O0Ju/files/000/dataset_28.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_29.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_30.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_25.dat /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/24/working +# Date: Fri Jun 8 12:18:13 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins4-emit-1.sto --- a/test-data/globins4-emit-1.sto Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins4-emit-1.sto Mon Jun 11 15:52:17 2018 -0400 @@ -1,4 +1,4 @@ ->globins4-sample1 +>dataset_x-sample1 CLDDGAENDNVLTGVLDLNPDEPSEAEPLILILVQSAPTTKAHFQKFVLLTTNMQVEFDT EIKAHTTMIIGASRAILSSIVQNRMNYYLLLLAKENHSGKERATRKKTDRECLHILGEVI TITLKREFPMDSNPAHSSRDGTFDLLVSLYRKALRNLY diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins4-emit.sto --- a/test-data/globins4-emit.sto Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins4-emit.sto Mon Jun 11 15:52:17 2018 -0400 @@ -1,26 +1,26 @@ # STOCKHOLM 1.0 -globins4-sample1 -.CLD.DgAENDNVL..TGV.LDLNPD...EPSEAEPLILILVQ.SAPTTK.AH...........FQKFVLLTTN.MQVEFDTEI..KAHT.T.MIIGASRAILSSI.VqNRMN.Y.YLLLLAkEnhsgkE.R..ATRKKTDRECLHILGEVITITL..KREFPMDSNPAHssrDGTFDLLVSLYRKALRNL.Y-..... -globins4-sample2 K.PLS.P.AQKKTIR..SAW.LLPGHS...KNDLGQEALVHLDL.AVPAMQ.TMishmlllylhkFPQFEHLSPNvKKLAYAELM..RVGA.I.TTL--LSKQWDTLeA.DATR.R.IPLEEN.D.....V.H..LQKYGLIRKKLQVISALVAKVI..LAGHPENFGPKV...SSAF----IVFYKG--EI.YK..... -globins4-sample3 S.MIS.K.RFKVLVE..NLW.LKV-AT...AGDIGSDQLVTFKA.VFTKIY.LT...........FDEFKGEKV-.---HREIAI..KLYTlS.AIAAILNPPLLNL.R.RIYN.H.ELSQLS.A.....L.H..CTQMQSNQEYFLV--NLTVDTI..YETKPTQYREKS...EASENKVTNLVSNALTAN.YR..... -globins4-sample4 IsTEC.L.EENEAAK..DVRqEHIVSEmglVDVYSQLLGVLMTT.SIPPTElNR...........MKEKRKLMTR.AGMTTSYAI..RMRG.NhVIHEALSSSAGR-.N.--NQcD.DVVQLS.Q.....K.Y..VTKIYVHPQKIEHITRVLVII-..PYE---THAAEE...DANMEKAVLSVRSRIVTK.FD..... -globins4-sample5 -.LIS.E.ASFPLVQnvEIW.VKVFNH...YAEAGNESLIKIVV.TYPDGS.KL...........NHCF-HGK-A.TTCQAANDW..KYDK.E.TFVSTLRKVLASR.K.TRFI.KgKILTVE.N.....E.H..KNSVSVALMRPKLGSNCT--TL..LEVIPSWAGPYE...ESAADKCIPLCASILTSE.YR..... -globins4-sample6 -.ALPgD.TGKQYSH..VCW.AN-HAR...--ESGLDILVRYYL.SLPQTL.NF...........FPKFVDITPK.PIMTNNARL..KEEG.A.AVLDA-MNSLLKI.V.QTIE.N.QFWALK.K.....S.F..AHALHVD-KIYKMLNELLIVIV..AAMEPEHDRPHA...DTAMYKVLQKLRKQLGEGrSLiygfp -globins4-sample7 P.KFH.N.STKGEVE..RSY.VKVVSK...VDNEGMEYLKDFLSfSRPHAQ.GK...........FGMLKSLQTL.PGLH-VESC..TTME.I.EVLQNLSTPVTGL.D.SQKG.N.EIKELC.R.....V.HldRRTAHVADETFKTYNNSTILRVaqKVHTMRRFDFAA...ADALESFLSYVPCLIEAQ.YQ..... -globins4-sample8 V.ALS.K.MEQTRVK..ALY.YQV---...SARSGAQALAEMLVrAHPDSR.ML...........FNQAEVIQTR.LTLAENAQI.qRGWG.K.MVVKADSKNMTRV.EgEKHG.M.EPKASA.R.....N.H..IPRENVINGFFKLSALKVVKTV..DVELARGITFSG...NAPVCPYFKGFAAVLSEP.YE..... -globins4-sample9 A.PLN.A.PGWQDVE..-IW.EYV---...-FHRTIRILRNLLK.EIPWER.RH...........FIKTSTVCLP.IICMGNAKLpwRDGG.T.QGRRALNPSVKQC.QfAKTS.G.SLRQCY.D.....R.QhvAIKDRVLINYFQIVGDLVVDYV..DVKLPQDFNPNL...EADIDRRLFISQRSLNCK.W-..... -globins4-sample10 -.TLE.M.QLRTDLS..NVA.VKSLAD...LE-VGLEKLMKLYN.SAKLLH.ALr.........cFEPTTKIVTA.SAPKGLRFV..KHQG.T.KVMTAINQAFADM.E.TNYE.Q.KYQSLR.E.....KyK..IEELSIDPRNFQLLAGRVVVRS..AKPLPILLSRQF...ERVLEEHLHLIGKDLQHK.Y-..... -#=GC RF x.xxx.x.xxxxxxx..xxx.xxxxxx...xxxxxxxxxxxxxx.xxxxxx.xx...........xxxxxxxxxx.xxxxxxxxx..xxxx.x.xxxxxxxxxxxxx.x.xxxx.x.xxxxxx.x.....x.x..xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx.xx..... +dataset_x-sample1 -.CLD.DgAENDNVL..TGV.LDLNPD...EPSEAEPLILILVQ.SAPTTK.AH...........FQKFVLLTTN.MQVEFDTEI..KAHT.T.MIIGASRAILSSI.VqNRMN.Y.YLLLLAkEnhsgkE.R..ATRKKTDRECLHILGEVITITL..KREFPMDSNPAHssrDGTFDLLVSLYRKALRNL.Y-..... +dataset_x-sample2 K.PLS.P.AQKKTIR..SAW.LLPGHS...KNDLGQEALVHLDL.AVPAMQ.TMishmlllylhkFPQFEHLSPNvKKLAYAELM..RVGA.I.TTL--LSKQWDTLeA.DATR.R.IPLEEN.D.....V.H..LQKYGLIRKKLQVISALVAKVI..LAGHPENFGPKV...SSAF----IVFYKG--EI.YK..... +dataset_x-sample3 S.MIS.K.RFKVLVE..NLW.LKV-AT...AGDIGSDQLVTFKA.VFTKIY.LT...........FDEFKGEKV-.---HREIAI..KLYTlS.AIAAILNPPLLNL.R.RIYN.H.ELSQLS.A.....L.H..CTQMQSNQEYFLV--NLTVDTI..YETKPTQYREKS...EASENKVTNLVSNALTAN.YR..... +dataset_x-sample4 IsTEC.L.EENEAAK..DVRqEHIVSEmglVDVYSQLLGVLMTT.SIPPTElNR...........MKEKRKLMTR.AGMTTSYAI..RMRG.NhVIHEALSSSAGR-.N.--NQcD.DVVQLS.Q.....K.Y..VTKIYVHPQKIEHITRVLVII-..PYE---THAAEE...DANMEKAVLSVRSRIVTK.FD..... +dataset_x-sample5 -.LIS.E.ASFPLVQnvEIW.VKVFNH...YAEAGNESLIKIVV.TYPDGS.KL...........NHCF-HGK-A.TTCQAANDW..KYDK.E.TFVSTLRKVLASR.K.TRFI.KgKILTVE.N.....E.H..KNSVSVALMRPKLGSNCT--TL..LEVIPSWAGPYE...ESAADKCIPLCASILTSE.YR..... +dataset_x-sample6 -.ALPgD.TGKQYSH..VCW.AN-HAR...--ESGLDILVRYYL.SLPQTL.NF...........FPKFVDITPK.PIMTNNARL..KEEG.A.AVLDA-MNSLLKI.V.QTIE.N.QFWALK.K.....S.F..AHALHVD-KIYKMLNELLIVIV..AAMEPEHDRPHA...DTAMYKVLQKLRKQLGEGrSLiygfp +dataset_x-sample7 P.KFH.N.STKGEVE..RSY.VKVVSK...VDNEGMEYLKDFLSfSRPHAQ.GK...........FGMLKSLQTL.PGLH-VESC..TTME.I.EVLQNLSTPVTGL.D.SQKG.N.EIKELC.R.....V.HldRRTAHVADETFKTYNNSTILRVaqKVHTMRRFDFAA...ADALESFLSYVPCLIEAQ.YQ..... +dataset_x-sample8 V.ALS.K.MEQTRVK..ALY.YQV---...SARSGAQALAEMLVrAHPDSR.ML...........FNQAEVIQTR.LTLAENAQI.qRGWG.K.MVVKADSKNMTRV.EgEKHG.M.EPKASA.R.....N.H..IPRENVINGFFKLSALKVVKTV..DVELARGITFSG...NAPVCPYFKGFAAVLSEP.YE..... +dataset_x-sample9 A.PLN.A.PGWQDVE..-IW.EYV---...-FHRTIRILRNLLK.EIPWER.RH...........FIKTSTVCLP.IICMGNAKLpwRDGG.T.QGRRALNPSVKQC.QfAKTS.G.SLRQCY.D.....R.QhvAIKDRVLINYFQIVGDLVVDYV..DVKLPQDFNPNL...EADIDRRLFISQRSLNCK.W-..... +dataset_x-sample10 -.TLE.M.QLRTDLS..NVA.VKSLAD...LE-VGLEKLMKLYN.SAKLLH.ALr.........cFEPTTKIVTA.SAPKGLRFV..KHQG.T.KVMTAINQAFADM.E.TNYE.Q.KYQSLR.E.....KyK..IEELSIDPRNFQLLAGRVVVRS..AKPLPILLSRQF...ERVLEEHLHLIGKDLQHK.Y-..... +#=GC RF x.xxx.x.xxxxxxx..xxx.xxxxxx...xxxxxxxxxxxxxx.xxxxxx.xx...........xxxxxxxxxx.xxxxxxxxx..xxxx.x.xxxxxxxxxxxxx.x.xxxx.x.xxxxxx.x.....x.x..xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx.xx..... -globins4-sample1 ... -globins4-sample2 ... -globins4-sample3 ... -globins4-sample4 ... -globins4-sample5 ... -globins4-sample6 gmp -globins4-sample7 ... -globins4-sample8 ... -globins4-sample9 ... -globins4-sample10 ... -#=GC RF ... +dataset_x-sample1 ... +dataset_x-sample2 ... +dataset_x-sample3 ... +dataset_x-sample4 ... +dataset_x-sample5 ... +dataset_x-sample6 gmp +dataset_x-sample7 ... +dataset_x-sample8 ... +dataset_x-sample9 ... +dataset_x-sample10 ... +#=GC RF ... // diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins4.hmm --- a/test-data/globins4.hmm Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins4.hmm Mon Jun 11 15:52:17 2018 -0400 @@ -1,5 +1,5 @@ -HMMER3/f [3.1b1 | May 2013] -NAME globins4 +HMMER3/f [3.2 | June 2018] +NAME dataset_6 LENG 149 ALPH amino RF no @@ -7,7 +7,7 @@ CONS yes CS no MAP yes -DATE Mon Feb 9 11:39:55 2015 +DATE Fri Jun 8 12:16:18 2018 NSEQ 4 EFFN 0.964844 CKSUM 2027839109 diff -r 7ea31fc35394 -r d0875d3f6544 test-data/globins4.hmm2 --- a/test-data/globins4.hmm2 Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/globins4.hmm2 Mon Jun 11 15:52:17 2018 -0400 @@ -1,12 +1,12 @@ -HMMER2.0 [converted from 3.1b2] -NAME globins4 +HMMER2.0 [converted from 3.2] +NAME dataset_x LENG 149 ALPH Amino RF no CS no MAP yes NSEQ 4 -DATE Mon Feb 9 11:39:55 2015 +DATE Fri Jun 8 12:14:52 2018 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4 NULT -4 -8455 NULE 656 -1722 98 419 -333 475 -1125 239 250 947 -1073 -271 -50 -338 114 451 113 430 -2131 -717 diff -r 7ea31fc35394 -r d0875d3f6544 test-data/jackhmmer.domtblout --- a/test-data/jackhmmer.domtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/jackhmmer.domtblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,103 +1,103 @@ # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- -HBB_MANSP - 146 sp|P02185|MYG_PHYCD - 142 7.7e-69 221.6 0.1 1 1 8.6e-69 8.6e-69 221.5 0.1 1 142 6 145 6 145 0.99 - -HBB_URSMA - 146 sp|P02185|MYG_PHYCD - 142 4.1e-68 219.3 0.2 1 1 4.5e-68 4.5e-68 219.1 0.2 1 142 6 145 6 145 0.99 - -HBB_RABIT - 146 sp|P02185|MYG_PHYCD - 142 5.6e-67 215.6 0.5 1 1 6.3e-67 6.3e-67 215.4 0.5 1 142 6 145 6 145 0.99 - -HBB_CALAR - 146 sp|P02185|MYG_PHYCD - 142 1.5e-66 214.2 0.1 1 1 1.7e-66 1.7e-66 214.0 0.1 1 142 6 145 6 145 0.99 - -HBB_TACAC - 146 sp|P02185|MYG_PHYCD - 142 5e-66 212.5 0.3 1 1 5.6e-66 5.6e-66 212.4 0.3 2 142 7 145 6 145 0.99 - -HBB_COLLI - 146 sp|P02185|MYG_PHYCD - 142 5.2e-66 212.5 0.0 1 1 5.7e-66 5.7e-66 212.3 0.0 1 142 6 145 6 145 0.99 - -HBE_PONPY - 146 sp|P02185|MYG_PHYCD - 142 6.6e-66 212.1 0.2 1 1 7.4e-66 7.4e-66 212.0 0.2 1 142 6 145 6 145 0.99 - -HBB_SUNMU - 146 sp|P02185|MYG_PHYCD - 142 7.2e-66 212.0 0.1 1 1 8e-66 8e-66 211.9 0.1 1 142 6 145 6 145 0.99 - -HBB_ORNAN - 146 sp|P02185|MYG_PHYCD - 142 1e-65 211.5 0.0 1 1 1.2e-65 1.2e-65 211.3 0.0 2 142 7 145 6 145 0.99 - -HBB_SPETO - 146 sp|P02185|MYG_PHYCD - 142 1.5e-65 211.0 0.4 1 1 1.7e-65 1.7e-65 210.8 0.4 2 142 7 145 6 145 0.99 - -HBB_EQUHE - 146 sp|P02185|MYG_PHYCD - 142 1.6e-65 210.9 0.2 1 1 1.8e-65 1.8e-65 210.7 0.2 1 142 6 145 6 145 0.99 - -HBB_SPECI - 146 sp|P02185|MYG_PHYCD - 142 2.3e-65 210.4 0.9 1 1 2.5e-65 2.5e-65 210.2 0.9 2 142 7 145 6 145 0.99 - -HBB_LARRI - 146 sp|P02185|MYG_PHYCD - 142 3e-65 210.0 0.0 1 1 3.4e-65 3.4e-65 209.8 0.0 1 142 6 145 6 145 0.99 - -HBB_TRIIN - 146 sp|P02185|MYG_PHYCD - 142 8e-65 208.6 0.1 1 1 8.9e-65 8.9e-65 208.5 0.1 1 142 6 145 6 145 0.99 - -HBB_TUPGL - 146 sp|P02185|MYG_PHYCD - 142 1.2e-62 201.6 0.0 1 1 1.3e-62 1.3e-62 201.5 0.0 1 142 6 145 6 145 0.99 - -HBA_MESAU - 141 sp|P02185|MYG_PHYCD - 142 1.5e-61 198.0 0.6 1 1 1.7e-61 1.7e-61 197.8 0.6 2 142 6 140 5 140 0.99 - -HBB1_VAREX - 146 sp|P02185|MYG_PHYCD - 142 3e-61 197.0 0.1 1 1 3.4e-61 3.4e-61 196.9 0.1 1 142 6 145 6 145 0.99 - -HBA_MACFA - 141 sp|P02185|MYG_PHYCD - 142 6e-61 196.1 1.1 1 1 6.6e-61 6.6e-61 195.9 1.1 2 142 6 140 5 140 0.99 - -HBA_MACSI - 141 sp|P02185|MYG_PHYCD - 142 9.7e-61 195.4 1.0 1 1 1.1e-60 1.1e-60 195.2 1.0 2 142 6 140 5 140 0.99 - -HBA2_BOSMU - 141 sp|P02185|MYG_PHYCD - 142 3.2e-60 193.7 0.9 1 1 3.6e-60 3.6e-60 193.6 0.9 2 142 6 140 5 140 0.99 - -HBA_PONPY - 141 sp|P02185|MYG_PHYCD - 142 3.2e-60 193.7 2.0 1 1 3.6e-60 3.6e-60 193.5 2.0 2 142 6 140 5 140 0.99 - -HBA2_GALCR - 141 sp|P02185|MYG_PHYCD - 142 4.2e-60 193.3 1.5 1 1 4.7e-60 4.7e-60 193.2 1.5 2 142 6 140 5 140 0.99 - -HBA_AILME - 141 sp|P02185|MYG_PHYCD - 142 5.7e-60 192.9 0.5 1 1 6.3e-60 6.3e-60 192.7 0.5 2 142 6 140 5 140 0.99 - -HBA_FRAPO - 141 sp|P02185|MYG_PHYCD - 142 9.6e-60 192.2 0.6 1 1 1.1e-59 1.1e-59 192.0 0.6 2 142 6 140 5 140 0.99 - -HBA_ANSSE - 141 sp|P02185|MYG_PHYCD - 142 1e-59 192.1 0.9 1 1 1.1e-59 1.1e-59 191.9 0.9 2 142 6 140 5 140 0.99 - -HBA_PHACO - 141 sp|P02185|MYG_PHYCD - 142 2.2e-59 191.0 0.6 1 1 2.4e-59 2.4e-59 190.9 0.6 2 142 6 140 5 140 0.99 - -HBA_PROLO - 141 sp|P02185|MYG_PHYCD - 142 2.4e-59 190.9 0.2 1 1 2.6e-59 2.6e-59 190.7 0.2 2 142 6 140 5 140 0.99 - -HBA_ERIEU - 141 sp|P02185|MYG_PHYCD - 142 4e-59 190.1 0.3 1 1 4.5e-59 4.5e-59 190.0 0.3 2 142 6 140 5 140 0.99 - -HBA_PAGLA - 141 sp|P02185|MYG_PHYCD - 142 4.2e-59 190.1 0.9 1 1 4.7e-59 4.7e-59 189.9 0.9 2 142 6 140 5 140 0.99 - -HBA_TRIOC - 141 sp|P02185|MYG_PHYCD - 142 1.6e-58 188.2 0.6 1 1 1.8e-58 1.8e-58 188.0 0.6 2 142 6 140 5 140 0.99 - -HBAD_CHLME - 141 sp|P02185|MYG_PHYCD - 142 3.9e-58 186.9 0.9 1 1 4.3e-58 4.3e-58 186.8 0.9 2 142 6 140 5 140 0.99 - -HBA_COLLI - 141 sp|P02185|MYG_PHYCD - 142 3.5e-57 183.8 0.4 1 1 3.9e-57 3.9e-57 183.7 0.4 2 142 6 140 5 140 0.99 - -HBBL_RANCA - 146 sp|P02185|MYG_PHYCD - 142 5.8e-57 183.1 0.2 1 1 6.5e-57 6.5e-57 183.0 0.2 1 142 6 145 6 145 0.99 - -HBAD_PASMO - 141 sp|P02185|MYG_PHYCD - 142 6.3e-56 179.8 0.1 1 1 7e-56 7e-56 179.6 0.1 1 142 5 140 5 140 0.99 - -HBAZ_HORSE - 141 sp|P02185|MYG_PHYCD - 142 9.4e-56 179.2 0.1 1 1 1e-55 1e-55 179.1 0.1 2 142 6 140 5 140 0.99 - -HBB2_XENTR - 146 sp|P02185|MYG_PHYCD - 142 4e-55 177.2 0.7 1 1 4.4e-55 4.4e-55 177.0 0.7 1 142 6 145 6 145 0.99 - -MYG_PROGU - 153 sp|P02185|MYG_PHYCD - 142 9.5e-55 176.0 1.6 1 1 1.1e-54 1.1e-54 175.8 1.6 2 142 6 146 5 146 1.00 - -MYG_LYCPI - 153 sp|P02185|MYG_PHYCD - 142 2.6e-54 174.6 5.3 1 1 2.9e-54 2.9e-54 174.4 5.3 2 142 6 146 5 146 1.00 - -MYG_MOUSE - 153 sp|P02185|MYG_PHYCD - 142 1.1e-53 172.5 1.6 1 1 1.2e-53 1.2e-53 172.4 1.6 2 142 6 146 5 146 1.00 - -MYG_SAISC - 153 sp|P02185|MYG_PHYCD - 142 1.2e-53 172.4 4.3 1 1 1.4e-53 1.4e-53 172.2 4.3 2 142 6 146 5 146 1.00 - -MYG_HORSE - 153 sp|P02185|MYG_PHYCD - 142 1.5e-53 172.1 4.2 1 1 1.7e-53 1.7e-53 171.9 4.2 2 142 6 146 5 146 1.00 - -MYG_ESCGI - 153 sp|P02185|MYG_PHYCD - 142 5e-53 170.4 5.7 1 1 5.6e-53 5.6e-53 170.2 5.7 2 142 6 146 5 146 1.00 - -HBA4_SALIR - 142 sp|P02185|MYG_PHYCD - 142 3.8e-52 167.5 0.1 1 1 4.2e-52 4.2e-52 167.4 0.1 2 142 6 141 5 141 0.99 - -HBB2_TRICR - 145 sp|P02185|MYG_PHYCD - 142 5.2e-50 160.6 0.0 1 1 5.8e-50 5.8e-50 160.5 0.0 1 142 6 145 6 145 0.99 - -MYG_MUSAN - 148 sp|P02185|MYG_PHYCD - 142 2.1e-45 145.7 0.4 1 1 2.3e-45 2.3e-45 145.5 0.4 2 142 2 141 1 141 0.99 - -HBB_MANSP - 146 sp|P02024|HBB_GORGO - 143 1.4e-71 230.4 0.0 1 1 1.5e-71 1.5e-71 230.3 0.0 1 143 3 145 3 145 0.99 - -HBB_URSMA - 146 sp|P02024|HBB_GORGO - 143 5.9e-71 228.4 0.1 1 1 6.6e-71 6.6e-71 228.2 0.1 1 143 3 145 3 145 0.99 - -HBB_RABIT - 146 sp|P02024|HBB_GORGO - 143 5.8e-70 225.2 0.3 1 1 6.4e-70 6.4e-70 225.0 0.3 1 143 3 145 3 145 0.99 - -HBB_SUNMU - 146 sp|P02024|HBB_GORGO - 143 2e-69 223.4 0.0 1 1 2.2e-69 2.2e-69 223.3 0.0 1 143 3 145 3 145 0.99 - -HBB_CALAR - 146 sp|P02024|HBB_GORGO - 143 2.4e-69 223.1 0.1 1 1 2.7e-69 2.7e-69 223.0 0.1 1 143 3 145 3 145 0.99 - -HBB_EQUHE - 146 sp|P02024|HBB_GORGO - 143 3.4e-69 222.7 0.1 1 1 3.8e-69 3.8e-69 222.5 0.1 1 143 3 145 3 145 0.99 - -HBB_COLLI - 146 sp|P02024|HBB_GORGO - 143 4.2e-69 222.4 0.0 1 1 4.7e-69 4.7e-69 222.2 0.0 1 143 3 145 3 145 1.00 - -HBB_TACAC - 146 sp|P02024|HBB_GORGO - 143 7.3e-69 221.6 0.1 1 1 8.1e-69 8.1e-69 221.4 0.1 1 143 3 145 3 145 0.99 - -HBE_PONPY - 146 sp|P02024|HBB_GORGO - 143 1.3e-68 220.8 0.1 1 1 1.5e-68 1.5e-68 220.6 0.1 1 143 3 145 3 145 0.99 - -HBB_SPECI - 146 sp|P02024|HBB_GORGO - 143 3e-68 219.6 0.4 1 1 3.3e-68 3.3e-68 219.5 0.4 1 143 3 145 3 145 0.99 - -HBB_SPETO - 146 sp|P02024|HBB_GORGO - 143 5.3e-68 218.8 0.2 1 1 5.9e-68 5.9e-68 218.7 0.2 1 143 3 145 3 145 0.99 - -HBB_ORNAN - 146 sp|P02024|HBB_GORGO - 143 1.3e-67 217.5 0.0 1 1 1.5e-67 1.5e-67 217.3 0.0 1 143 3 145 3 145 0.99 - -HBB_TRIIN - 146 sp|P02024|HBB_GORGO - 143 1.4e-67 217.5 0.0 1 1 1.5e-67 1.5e-67 217.3 0.0 1 143 3 145 3 145 0.99 - -HBB_LARRI - 146 sp|P02024|HBB_GORGO - 143 2.5e-67 216.6 0.0 1 1 2.8e-67 2.8e-67 216.5 0.0 1 143 3 145 3 145 1.00 - -HBB_TUPGL - 146 sp|P02024|HBB_GORGO - 143 6.5e-66 212.0 0.0 1 1 7.2e-66 7.2e-66 211.9 0.0 1 143 3 145 3 145 0.99 - -HBB1_VAREX - 146 sp|P02024|HBB_GORGO - 143 6e-65 208.9 0.0 1 1 6.6e-65 6.6e-65 208.8 0.0 1 143 3 145 3 145 1.00 - -HBA_MESAU - 141 sp|P02024|HBB_GORGO - 143 1.9e-62 200.8 0.3 1 1 2.1e-62 2.1e-62 200.6 0.3 1 143 2 140 2 140 0.99 - -HBA_PONPY - 141 sp|P02024|HBB_GORGO - 143 1.9e-61 197.6 0.7 1 1 2.1e-61 2.1e-61 197.4 0.7 1 143 2 140 2 140 0.98 - -HBBL_RANCA - 146 sp|P02024|HBB_GORGO - 143 2.7e-61 197.0 0.1 1 1 3.1e-61 3.1e-61 196.9 0.1 1 143 3 145 3 145 1.00 - -HBA_MACFA - 141 sp|P02024|HBB_GORGO - 143 3.6e-61 196.6 0.3 1 1 4.1e-61 4.1e-61 196.5 0.3 1 143 2 140 2 140 0.99 - -HBA_MACSI - 141 sp|P02024|HBB_GORGO - 143 5.2e-61 196.1 0.2 1 1 5.8e-61 5.8e-61 196.0 0.2 1 143 2 140 2 140 0.99 - -HBA_AILME - 141 sp|P02024|HBB_GORGO - 143 9e-61 195.4 0.1 1 1 1e-60 1e-60 195.2 0.1 1 143 2 140 2 140 0.99 - -HBB2_XENTR - 146 sp|P02024|HBB_GORGO - 143 1.6e-60 194.6 0.4 1 1 1.8e-60 1.8e-60 194.4 0.4 1 143 3 145 3 145 0.99 - -HBA2_GALCR - 141 sp|P02024|HBB_GORGO - 143 2.7e-60 193.8 0.5 1 1 3e-60 3e-60 193.7 0.5 1 143 2 140 2 140 0.98 - -HBA_FRAPO - 141 sp|P02024|HBB_GORGO - 143 3e-60 193.7 0.4 1 1 3.3e-60 3.3e-60 193.5 0.4 1 143 2 140 2 140 0.99 - -HBA_PHACO - 141 sp|P02024|HBB_GORGO - 143 3e-60 193.7 0.4 1 1 3.4e-60 3.4e-60 193.5 0.4 1 143 2 140 2 140 0.99 - -HBA2_BOSMU - 141 sp|P02024|HBB_GORGO - 143 3.2e-60 193.6 0.3 1 1 3.5e-60 3.5e-60 193.4 0.3 1 143 2 140 2 140 0.99 - -HBA_ERIEU - 141 sp|P02024|HBB_GORGO - 143 1e-59 191.9 0.1 1 1 1.1e-59 1.1e-59 191.8 0.1 1 143 2 140 2 140 0.98 - -HBA_PROLO - 141 sp|P02024|HBB_GORGO - 143 1.4e-59 191.5 0.0 1 1 1.5e-59 1.5e-59 191.4 0.0 1 143 2 140 2 140 0.99 - -HBA_ANSSE - 141 sp|P02024|HBB_GORGO - 143 1.6e-59 191.3 0.4 1 1 1.8e-59 1.8e-59 191.1 0.4 1 143 2 140 2 140 0.99 - -HBA_PAGLA - 141 sp|P02024|HBB_GORGO - 143 1.7e-59 191.2 0.5 1 1 1.9e-59 1.9e-59 191.1 0.5 1 143 2 140 2 140 0.99 - -HBA_TRIOC - 141 sp|P02024|HBB_GORGO - 143 1.1e-58 188.6 0.5 1 1 1.2e-58 1.2e-58 188.4 0.5 1 143 2 140 2 140 0.99 - -HBAD_CHLME - 141 sp|P02024|HBB_GORGO - 143 2.9e-58 187.2 0.6 1 1 3.2e-58 3.2e-58 187.1 0.6 1 143 2 140 2 140 0.98 - -HBAZ_HORSE - 141 sp|P02024|HBB_GORGO - 143 3.4e-58 187.0 0.1 1 1 3.8e-58 3.8e-58 186.9 0.1 1 143 2 140 2 140 0.98 - -HBA_COLLI - 141 sp|P02024|HBB_GORGO - 143 6.7e-58 186.1 0.2 1 1 7.4e-58 7.4e-58 185.9 0.2 1 143 2 140 2 140 0.98 - -HBAD_PASMO - 141 sp|P02024|HBB_GORGO - 143 8.9e-58 185.7 0.1 1 1 9.9e-58 9.9e-58 185.5 0.1 1 143 2 140 2 140 0.98 - -MYG_LYCPI - 153 sp|P02024|HBB_GORGO - 143 1.1e-56 182.1 1.9 1 1 1.3e-56 1.3e-56 181.9 1.9 1 143 2 146 2 146 0.97 - -MYG_SAISC - 153 sp|P02024|HBB_GORGO - 143 1.1e-56 182.1 1.1 1 1 1.3e-56 1.3e-56 181.9 1.1 1 143 2 146 2 146 0.98 - -MYG_ESCGI - 153 sp|P02024|HBB_GORGO - 143 2.5e-56 181.0 1.7 1 1 2.8e-56 2.8e-56 180.8 1.7 1 143 2 146 2 146 0.97 - -MYG_PROGU - 153 sp|P02024|HBB_GORGO - 143 3.2e-56 180.6 0.2 1 1 3.6e-56 3.6e-56 180.4 0.2 1 143 2 146 2 146 0.97 - -MYG_HORSE - 153 sp|P02024|HBB_GORGO - 143 9.5e-56 179.1 1.0 1 1 1.1e-55 1.1e-55 178.9 1.0 1 143 2 146 2 146 0.97 - -MYG_MOUSE - 153 sp|P02024|HBB_GORGO - 143 1.8e-55 178.2 0.3 1 1 2e-55 2e-55 178.0 0.3 1 143 2 146 2 146 0.97 - -HBA4_SALIR - 142 sp|P02024|HBB_GORGO - 143 3.4e-55 177.3 0.1 1 1 3.8e-55 3.8e-55 177.1 0.1 1 143 2 141 2 141 0.98 - -HBB2_TRICR - 145 sp|P02024|HBB_GORGO - 143 1.8e-53 171.7 0.0 1 1 2e-53 2e-53 171.6 0.0 1 143 3 145 3 145 0.99 - -MYG_MUSAN - 148 sp|P02024|HBB_GORGO - 143 1e-44 143.3 0.3 1 1 1.1e-44 1.1e-44 143.2 0.3 5 143 2 141 1 141 0.96 - +HBB_MANSP - 146 sp|P02185|MYG_PHYCD - 154 1.5e-69 224.0 0.1 1 1 1.7e-69 1.7e-69 223.9 0.1 3 147 3 145 1 146 0.99 - +HBB_URSMA - 146 sp|P02185|MYG_PHYCD - 154 4.6e-69 222.5 0.2 1 1 5e-69 5e-69 222.3 0.2 3 147 3 145 1 146 0.99 - +HBB_RABIT - 146 sp|P02185|MYG_PHYCD - 154 2.5e-68 220.1 0.6 1 1 2.7e-68 2.7e-68 220.0 0.6 3 147 3 145 1 146 0.99 - +HBB_SUNMU - 146 sp|P02185|MYG_PHYCD - 154 7.6e-68 218.5 0.0 1 1 8.3e-68 8.3e-68 218.4 0.0 3 147 3 145 1 146 0.99 - +HBB_COLLI - 146 sp|P02185|MYG_PHYCD - 154 9.5e-68 218.2 0.0 1 1 1.1e-67 1.1e-67 217.9 0.0 4 147 4 145 2 146 0.99 - +HBB_EQUHE - 146 sp|P02185|MYG_PHYCD - 154 1.4e-67 217.6 0.1 1 1 1.6e-67 1.6e-67 217.5 0.1 3 147 3 145 1 146 0.98 - +HBB_TACAC - 146 sp|P02185|MYG_PHYCD - 154 1.5e-67 217.6 0.3 1 1 1.6e-67 1.6e-67 217.4 0.3 3 147 3 145 1 146 0.99 - +HBB_SPECI - 146 sp|P02185|MYG_PHYCD - 154 3.3e-67 216.5 0.7 1 1 3.6e-67 3.6e-67 216.3 0.7 3 147 3 145 1 146 0.98 - +HBB_CALAR - 146 sp|P02185|MYG_PHYCD - 154 3.4e-67 216.4 0.1 1 1 3.8e-67 3.8e-67 216.3 0.1 3 147 3 145 1 146 0.99 - +HBB_SPETO - 146 sp|P02185|MYG_PHYCD - 154 3.7e-67 216.3 0.4 1 1 4.1e-67 4.1e-67 216.1 0.4 3 147 3 145 1 146 0.98 - +HBB_ORNAN - 146 sp|P02185|MYG_PHYCD - 154 6.6e-67 215.5 0.0 1 1 7.2e-67 7.2e-67 215.3 0.0 3 147 3 145 1 146 0.99 - +HBE_PONPY - 146 sp|P02185|MYG_PHYCD - 154 8.4e-67 215.1 0.3 1 1 9.2e-67 9.2e-67 215.0 0.3 4 147 4 145 1 146 0.98 - +MYG_ESCGI - 153 sp|P02185|MYG_PHYCD - 154 2.3e-66 213.7 1.7 1 1 2.6e-66 2.6e-66 213.5 1.7 2 154 1 153 1 153 1.00 - +HBB_TRIIN - 146 sp|P02185|MYG_PHYCD - 154 2.9e-66 213.4 0.1 1 1 3.2e-66 3.2e-66 213.2 0.1 3 147 3 145 1 146 0.99 - +HBB_LARRI - 146 sp|P02185|MYG_PHYCD - 154 5.3e-66 212.5 0.0 1 1 6.4e-66 6.4e-66 212.3 0.0 4 147 4 145 2 146 0.99 - +MYG_LYCPI - 153 sp|P02185|MYG_PHYCD - 154 8.7e-66 211.8 1.6 1 1 9.6e-66 9.6e-66 211.7 1.6 3 154 2 153 1 153 1.00 - +MYG_PROGU - 153 sp|P02185|MYG_PHYCD - 154 1.8e-65 210.8 0.2 1 1 2e-65 2e-65 210.6 0.2 3 154 2 153 1 153 1.00 - +MYG_SAISC - 153 sp|P02185|MYG_PHYCD - 154 2.5e-65 210.3 0.9 1 1 2.8e-65 2.8e-65 210.2 0.9 3 154 2 153 1 153 1.00 - +MYG_HORSE - 153 sp|P02185|MYG_PHYCD - 154 2.6e-65 210.3 0.8 1 1 2.9e-65 2.9e-65 210.1 0.8 3 154 2 153 1 153 1.00 - +HBA_MESAU - 141 sp|P02185|MYG_PHYCD - 154 9.1e-65 208.5 0.2 1 1 1e-64 1e-64 208.4 0.2 2 148 1 141 1 141 0.99 - +MYG_MOUSE - 153 sp|P02185|MYG_PHYCD - 154 1.3e-64 208.0 0.3 1 1 1.4e-64 1.4e-64 207.9 0.3 3 154 2 153 1 153 1.00 - +HBB_TUPGL - 146 sp|P02185|MYG_PHYCD - 154 1.5e-64 207.8 0.0 1 1 1.7e-64 1.7e-64 207.6 0.0 3 147 3 145 1 146 0.98 - +HBA_PONPY - 141 sp|P02185|MYG_PHYCD - 154 1.3e-63 204.7 0.5 1 1 1.5e-63 1.5e-63 204.6 0.5 2 148 1 141 1 141 0.99 - +HBA_MACFA - 141 sp|P02185|MYG_PHYCD - 154 2.9e-63 203.6 0.2 1 1 3.2e-63 3.2e-63 203.5 0.2 2 148 1 141 1 141 0.99 - +HBA_MACSI - 141 sp|P02185|MYG_PHYCD - 154 4e-63 203.2 0.2 1 1 4.4e-63 4.4e-63 203.0 0.2 2 148 1 141 1 141 0.99 - +HBB1_VAREX - 146 sp|P02185|MYG_PHYCD - 154 5e-63 202.9 0.1 1 1 5.9e-63 5.9e-63 202.6 0.1 4 147 4 145 2 146 0.98 - +HBA_AILME - 141 sp|P02185|MYG_PHYCD - 154 5.7e-63 202.7 0.1 1 1 6.4e-63 6.4e-63 202.5 0.1 2 148 1 141 1 141 0.99 - +HBA2_BOSMU - 141 sp|P02185|MYG_PHYCD - 154 8.6e-63 202.1 0.3 1 1 9.6e-63 9.6e-63 201.9 0.3 2 148 1 141 1 141 0.99 - +HBA_FRAPO - 141 sp|P02185|MYG_PHYCD - 154 1.8e-62 201.0 0.3 1 1 2e-62 2e-62 200.9 0.3 2 148 1 141 1 141 0.99 - +HBA2_GALCR - 141 sp|P02185|MYG_PHYCD - 154 1.9e-62 201.0 0.4 1 1 2.1e-62 2.1e-62 200.8 0.4 2 148 1 141 1 141 0.99 - +HBA_PHACO - 141 sp|P02185|MYG_PHYCD - 154 2.1e-62 200.8 0.3 1 1 2.4e-62 2.4e-62 200.7 0.3 2 148 1 141 1 141 0.99 - +HBA_ANSSE - 141 sp|P02185|MYG_PHYCD - 154 4e-62 199.9 0.3 1 1 4.4e-62 4.4e-62 199.8 0.3 2 148 1 141 1 141 0.99 - +HBA_ERIEU - 141 sp|P02185|MYG_PHYCD - 154 4e-62 199.9 0.1 1 1 4.5e-62 4.5e-62 199.8 0.1 2 148 1 141 1 141 0.99 - +HBA_PAGLA - 141 sp|P02185|MYG_PHYCD - 154 8.3e-62 198.9 0.3 1 1 9.2e-62 9.2e-62 198.8 0.3 2 148 1 141 1 141 0.99 - +HBA_PROLO - 141 sp|P02185|MYG_PHYCD - 154 9.5e-62 198.7 0.0 1 1 1.1e-61 1.1e-61 198.6 0.0 2 148 1 141 1 141 0.99 - +HBA_TRIOC - 141 sp|P02185|MYG_PHYCD - 154 2.2e-61 197.5 0.4 1 1 2.4e-61 2.4e-61 197.4 0.4 2 148 1 141 1 141 0.99 - +HBAD_CHLME - 141 sp|P02185|MYG_PHYCD - 154 1.2e-60 195.1 0.5 1 1 1.3e-60 1.3e-60 195.0 0.5 3 148 2 141 1 141 0.99 - +HBAZ_HORSE - 141 sp|P02185|MYG_PHYCD - 154 4.1e-60 193.4 0.1 1 1 4.5e-60 4.5e-60 193.3 0.1 3 148 2 141 1 141 0.99 - +HBA_COLLI - 141 sp|P02185|MYG_PHYCD - 154 6e-60 192.9 0.2 1 1 6.7e-60 6.7e-60 192.7 0.2 2 148 1 141 1 141 0.99 - +HBBL_RANCA - 146 sp|P02185|MYG_PHYCD - 154 1.7e-59 191.4 0.2 1 1 2e-59 2e-59 191.2 0.2 4 147 4 145 2 146 0.98 - +HBAD_PASMO - 141 sp|P02185|MYG_PHYCD - 154 2.2e-59 191.0 0.1 1 1 2.4e-59 2.4e-59 190.9 0.1 3 148 2 141 1 141 0.99 - +HBB2_XENTR - 146 sp|P02185|MYG_PHYCD - 154 1.1e-58 188.8 0.6 1 1 1.3e-58 1.3e-58 188.6 0.6 4 147 4 145 2 146 0.98 - +HBA4_SALIR - 142 sp|P02185|MYG_PHYCD - 154 5.3e-56 180.0 0.1 1 1 5.9e-56 5.9e-56 179.9 0.1 3 148 2 142 1 142 0.99 - +MYG_MUSAN - 148 sp|P02185|MYG_PHYCD - 154 2.5e-54 174.6 0.4 1 1 2.8e-54 2.8e-54 174.5 0.4 7 154 2 148 1 148 0.99 - +HBB2_TRICR - 145 sp|P02185|MYG_PHYCD - 154 2e-52 168.4 0.0 1 1 2.2e-52 2.2e-52 168.3 0.0 3 147 3 145 1 145 0.99 - +HBB_MANSP - 146 sp|P02024|HBB_GORGO - 147 3.6e-74 238.9 0.1 1 1 4e-74 4e-74 238.8 0.1 2 147 1 146 1 146 1.00 - +HBB_URSMA - 146 sp|P02024|HBB_GORGO - 147 1.7e-73 236.7 0.3 1 1 1.9e-73 1.9e-73 236.6 0.3 2 147 1 146 1 146 1.00 - +HBB_RABIT - 146 sp|P02024|HBB_GORGO - 147 2.2e-72 233.1 0.8 1 1 2.4e-72 2.4e-72 233.0 0.8 2 147 1 146 1 146 1.00 - +HBB_SUNMU - 146 sp|P02024|HBB_GORGO - 147 5.4e-72 231.8 0.1 1 1 6e-72 6e-72 231.7 0.1 2 147 1 146 1 146 1.00 - +HBB_CALAR - 146 sp|P02024|HBB_GORGO - 147 7e-72 231.5 0.2 1 1 7.7e-72 7.7e-72 231.3 0.2 2 147 1 146 1 146 1.00 - +HBB_COLLI - 146 sp|P02024|HBB_GORGO - 147 9.6e-72 231.0 0.0 1 1 1.1e-71 1.1e-71 230.9 0.0 2 147 1 146 1 146 1.00 - +HBB_TACAC - 146 sp|P02024|HBB_GORGO - 147 2.5e-71 229.7 0.4 1 1 2.8e-71 2.8e-71 229.6 0.4 2 147 1 146 1 146 1.00 - +HBE_PONPY - 146 sp|P02024|HBB_GORGO - 147 4.8e-71 228.8 0.4 1 1 5.3e-71 5.3e-71 228.6 0.4 2 147 1 146 1 146 1.00 - +HBB_EQUHE - 146 sp|P02024|HBB_GORGO - 147 5.1e-71 228.7 0.2 1 1 5.7e-71 5.7e-71 228.5 0.2 2 147 1 146 1 146 0.99 - +HBB_SPECI - 146 sp|P02024|HBB_GORGO - 147 1.3e-70 227.3 1.0 1 1 1.5e-70 1.5e-70 227.2 1.0 2 147 1 146 1 146 1.00 - +HBB_SPETO - 146 sp|P02024|HBB_GORGO - 147 2e-70 226.8 0.6 1 1 2.2e-70 2.2e-70 226.6 0.6 2 147 1 146 1 146 1.00 - +HBB_TRIIN - 146 sp|P02024|HBB_GORGO - 147 3.7e-70 225.9 0.1 1 1 4.1e-70 4.1e-70 225.8 0.1 2 147 1 146 1 146 1.00 - +HBB_ORNAN - 146 sp|P02024|HBB_GORGO - 147 4.1e-70 225.7 0.0 1 1 4.6e-70 4.6e-70 225.6 0.0 2 147 1 146 1 146 1.00 - +HBB_LARRI - 146 sp|P02024|HBB_GORGO - 147 5.7e-70 225.3 0.0 1 1 6.4e-70 6.4e-70 225.1 0.0 2 147 1 146 1 146 1.00 - +HBB_TUPGL - 146 sp|P02024|HBB_GORGO - 147 1.8e-68 220.5 0.0 1 1 1.9e-68 1.9e-68 220.3 0.0 2 147 1 146 1 146 1.00 - +HBB1_VAREX - 146 sp|P02024|HBB_GORGO - 147 1.5e-67 217.4 0.1 1 1 1.7e-67 1.7e-67 217.3 0.1 2 147 1 146 1 146 1.00 - +HBBL_RANCA - 146 sp|P02024|HBB_GORGO - 147 7.8e-64 205.4 0.3 1 1 8.7e-64 8.7e-64 205.2 0.3 2 147 1 146 1 146 1.00 - +HBA_MESAU - 141 sp|P02024|HBB_GORGO - 147 4.5e-63 202.9 0.3 1 1 5e-63 5e-63 202.8 0.3 4 146 2 140 1 141 0.99 - +HBB2_XENTR - 146 sp|P02024|HBB_GORGO - 147 2e-62 200.8 0.8 1 1 2.3e-62 2.3e-62 200.6 0.8 2 146 1 145 1 146 1.00 - +HBA_PONPY - 141 sp|P02024|HBB_GORGO - 147 4.6e-62 199.6 0.7 1 1 5e-62 5e-62 199.5 0.7 4 146 2 140 1 141 0.98 - +HBA_MACFA - 141 sp|P02024|HBB_GORGO - 147 8.7e-62 198.7 0.3 1 1 9.6e-62 9.6e-62 198.6 0.3 4 146 2 140 1 141 0.99 - +HBA_MACSI - 141 sp|P02024|HBB_GORGO - 147 1.3e-61 198.2 0.3 1 1 1.4e-61 1.4e-61 198.1 0.3 4 146 2 140 1 141 0.99 - +HBA_AILME - 141 sp|P02024|HBB_GORGO - 147 2.1e-61 197.5 0.1 1 1 2.4e-61 2.4e-61 197.3 0.1 4 146 2 140 1 141 0.99 - +HBA2_GALCR - 141 sp|P02024|HBB_GORGO - 147 6.6e-61 195.9 0.6 1 1 7.3e-61 7.3e-61 195.7 0.6 4 146 2 140 1 141 0.98 - +HBA_FRAPO - 141 sp|P02024|HBB_GORGO - 147 7.1e-61 195.8 0.4 1 1 7.8e-61 7.8e-61 195.7 0.4 4 146 2 140 1 141 0.98 - +HBA_PHACO - 141 sp|P02024|HBB_GORGO - 147 7.3e-61 195.7 0.4 1 1 8e-61 8e-61 195.6 0.4 4 146 2 140 1 141 0.99 - +HBA2_BOSMU - 141 sp|P02024|HBB_GORGO - 147 7.6e-61 195.7 0.4 1 1 8.3e-61 8.3e-61 195.6 0.4 4 146 2 140 1 141 0.99 - +HBA_ERIEU - 141 sp|P02024|HBB_GORGO - 147 2.4e-60 194.0 0.1 1 1 2.7e-60 2.7e-60 193.9 0.1 4 146 2 140 1 141 0.98 - +HBA_PROLO - 141 sp|P02024|HBB_GORGO - 147 3.3e-60 193.6 0.0 1 1 3.6e-60 3.6e-60 193.5 0.0 4 146 2 140 1 141 0.99 - +HBA_ANSSE - 141 sp|P02024|HBB_GORGO - 147 3.9e-60 193.4 0.4 1 1 4.3e-60 4.3e-60 193.2 0.4 4 146 2 140 1 141 0.99 - +HBA_PAGLA - 141 sp|P02024|HBB_GORGO - 147 4.1e-60 193.3 0.5 1 1 4.5e-60 4.5e-60 193.2 0.5 4 146 2 140 1 141 0.98 - +HBA_TRIOC - 141 sp|P02024|HBB_GORGO - 147 2.7e-59 190.7 0.5 1 1 2.9e-59 2.9e-59 190.5 0.5 4 146 2 140 1 141 0.98 - +HBAD_CHLME - 141 sp|P02024|HBB_GORGO - 147 6.3e-59 189.4 0.5 1 1 7e-59 7e-59 189.3 0.5 4 146 2 140 1 141 0.98 - +HBAZ_HORSE - 141 sp|P02024|HBB_GORGO - 147 7.5e-59 189.2 0.1 1 1 8.2e-59 8.2e-59 189.1 0.1 4 146 2 140 1 141 0.98 - +HBA_COLLI - 141 sp|P02024|HBB_GORGO - 147 1.6e-58 188.1 0.2 1 1 1.8e-58 1.8e-58 188.0 0.2 4 146 2 140 1 141 0.98 - +HBAD_PASMO - 141 sp|P02024|HBB_GORGO - 147 2e-58 187.8 0.1 1 1 2.2e-58 2.2e-58 187.7 0.1 4 146 2 140 1 141 0.98 - +MYG_SAISC - 153 sp|P02024|HBB_GORGO - 147 2.9e-57 184.1 1.0 1 1 3.2e-57 3.2e-57 183.9 1.0 4 146 2 146 1 147 0.98 - +MYG_LYCPI - 153 sp|P02024|HBB_GORGO - 147 3e-57 184.0 1.9 1 1 3.3e-57 3.3e-57 183.9 1.9 4 146 2 146 1 147 0.97 - +MYG_PROGU - 153 sp|P02024|HBB_GORGO - 147 8.3e-57 182.6 0.2 1 1 9.2e-57 9.2e-57 182.4 0.2 4 146 2 146 1 147 0.97 - +MYG_ESCGI - 153 sp|P02024|HBB_GORGO - 147 8.8e-57 182.5 2.3 1 1 9.7e-57 9.7e-57 182.4 2.3 4 146 2 146 1 147 0.97 - +MYG_HORSE - 153 sp|P02024|HBB_GORGO - 147 2.5e-56 181.0 1.0 1 1 2.7e-56 2.7e-56 180.9 1.0 4 146 2 146 1 147 0.97 - +MYG_MOUSE - 153 sp|P02024|HBB_GORGO - 147 4.7e-56 180.1 0.3 1 1 5.2e-56 5.2e-56 180.0 0.3 4 146 2 146 1 147 0.97 - +HBA4_SALIR - 142 sp|P02024|HBB_GORGO - 147 7.5e-56 179.5 0.1 1 1 8.3e-56 8.3e-56 179.3 0.1 4 146 2 141 1 142 0.98 - +HBB2_TRICR - 145 sp|P02024|HBB_GORGO - 147 2.7e-55 177.7 0.0 1 1 3e-55 3e-55 177.5 0.0 2 146 1 145 1 145 1.00 - +MYG_MUSAN - 148 sp|P02024|HBB_GORGO - 147 4.6e-45 144.5 0.3 1 1 5.1e-45 5.1e-45 144.3 0.3 8 146 2 141 1 142 0.96 - # # Program: jackhmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmphb1nFG/files/000/dataset_1.dat -# Target file: /tmp/tmphb1nFG/files/000/dataset_2.dat -# Option settings: jackhmmer -N 5 --tblout /tmp/tmphb1nFG/files/000/dataset_4.dat --domtblout /tmp/tmphb1nFG/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --fast --hand --symfrac 0.5 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmphb1nFG/files/000/dataset_1.dat /tmp/tmphb1nFG/files/000/dataset_2.dat -# Current dir: /tmp/tmphb1nFG/job_working_directory/000/3 -# Date: Sat Jun 25 19:33:04 2016 +# Query file: /tmp/tmpw5_nj0/files/000/dataset_1.dat +# Target file: /tmp/tmpw5_nj0/files/000/dataset_2.dat +# Option settings: jackhmmer -N 5 --tblout /tmp/tmpw5_nj0/files/000/dataset_4.dat --domtblout /tmp/tmpw5_nj0/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpw5_nj0/files/000/dataset_1.dat /tmp/tmpw5_nj0/files/000/dataset_2.dat +# Current dir: /tmp/tmpw5_nj0/job_working_directory/000/3/working +# Date: Mon Jun 11 17:59:06 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/jackhmmer.out --- a/test-data/jackhmmer.out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/jackhmmer.out Mon Jun 11 15:52:17 2018 -0400 @@ -1,18 +1,17 @@ # jackhmmer :: iteratively search a protein sequence against a protein database -# HMMER 3.1b1 (May 2013); http://hmmer.org/ -# Copyright (C) 2013 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: /tmp/tmpwsYozTfiles/000/dataset_31.dat -# target sequence database: /tmp/tmpwsYozTfiles/000/dataset_32.dat -# per-seq hits tabular output: /tmp/tmpwsYozTfiles/000/dataset_34.dat -# per-dom hits tabular output: /tmp/tmpwsYozTfiles/000/dataset_35.dat +# query sequence file: /tmp/tmpw5_nj0/files/000/dataset_1.dat +# target sequence database: /tmp/tmpw5_nj0/files/000/dataset_2.dat +# per-seq hits tabular output: /tmp/tmpw5_nj0/files/000/dataset_4.dat +# per-dom hits tabular output: /tmp/tmpw5_nj0/files/000/dataset_5.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 -# model architecture construction: fast/heuristic # random number seed set to: 4 -# number of worker threads: 2 +# number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sp|P02185|MYG_PHYCD [L=154] @@ -601,16 +600,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (154 nodes) -Target sequences: 45 (6519 residues searched) +Query model(s): 1 (154 nodes) +Target sequences: 45 (6519 residues searched) Passed MSV filter: 45 (1); expected 0.9 (0.02) Passed bias filter: 45 (1); expected 0.9 (0.02) Passed Vit filter: 45 (1); expected 0.0 (0.001) Passed Fwd filter: 44 (0.977778); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 44 [number of targets reported over threshold] -# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.13 -# Mc/sec: 7.72 +# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 +# Mc/sec: 31.40 @@ New targets included: 44 @@ New alignment includes: 45 subseqs (was 1), including original query @@ -619,660 +618,660 @@ @@ @@ Round: 2 @@ Included in MSA: 45 subsequences (query + 44 subseqs from 44 targets) -@@ Model size: 142 positions +@@ Model size: 154 positions @@ Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- - 6.1e-66 212.1 0.1 6.8e-66 211.9 0.1 1.0 1 HBB_MANSP - 2.2e-65 210.2 0.1 2.5e-65 210.1 0.1 1.0 1 HBB_URSMA - 1.2e-64 207.8 0.0 1.4e-64 207.7 0.0 1.0 1 HBB_COLLI - 1.3e-64 207.7 0.3 1.5e-64 207.6 0.3 1.0 1 HBB_RABIT - 2.5e-64 206.8 0.0 2.8e-64 206.7 0.0 1.0 1 HBB_SUNMU - 3.6e-64 206.3 0.1 4.1e-64 206.1 0.1 1.0 1 HBB_EQUHE - 5.1e-64 205.8 0.4 5.7e-64 205.7 0.4 1.0 1 HBB_SPECI - 6.3e-64 205.5 0.2 7.1e-64 205.4 0.2 1.0 1 HBB_TACAC - 7e-64 205.4 0.1 7.9e-64 205.2 0.1 1.0 1 HBE_PONPY - 9.7e-64 204.9 0.2 1.1e-63 204.8 0.2 1.0 1 HBB_SPETO - 1.6e-63 204.2 0.1 1.8e-63 204.1 0.1 1.0 1 HBB_CALAR - 4.9e-63 202.7 0.0 5.4e-63 202.5 0.0 1.0 1 HBB_ORNAN - 8.4e-63 201.9 0.0 9.5e-63 201.7 0.0 1.0 1 HBB_LARRI - 1.2e-62 201.4 0.1 1.3e-62 201.2 0.1 1.0 1 HBB_TRIIN - 3.4e-62 199.9 0.2 3.9e-62 199.7 0.2 1.0 1 HBA_MESAU - 1.3e-61 198.1 0.8 1.4e-61 197.9 0.8 1.0 1 HBA_PONPY - 2.5e-61 197.1 2.3 2.8e-61 197.0 2.3 1.0 1 MYG_ESCGI - 3.4e-61 196.7 0.3 3.8e-61 196.5 0.3 1.0 1 HBA_MACFA - 4.2e-61 196.4 0.3 4.7e-61 196.2 0.3 1.0 1 HBA_MACSI - 5.5e-61 196.0 2.5 6.2e-61 195.8 2.5 1.0 1 MYG_LYCPI - 6.1e-61 195.8 0.1 6.8e-61 195.7 0.1 1.0 1 HBA_AILME - 7.1e-61 195.6 0.3 8e-61 195.5 0.3 1.0 1 MYG_PROGU - 9.2e-61 195.3 0.0 1e-60 195.1 0.0 1.0 1 HBB_TUPGL - 1.2e-60 194.9 1.5 1.3e-60 194.7 1.5 1.0 1 MYG_HORSE - 1.9e-60 194.2 0.6 2.2e-60 194.1 0.6 1.0 1 HBA2_GALCR - 2.5e-60 193.9 0.3 2.8e-60 193.7 0.3 1.0 1 HBA_FRAPO - 2.6e-60 193.8 0.4 2.9e-60 193.7 0.4 1.0 1 HBA_PHACO - 2.7e-60 193.8 1.5 3e-60 193.6 1.5 1.0 1 MYG_SAISC - 2.8e-60 193.7 0.2 3.1e-60 193.6 0.2 1.0 1 HBA2_BOSMU - 4e-60 193.2 0.0 4.5e-60 193.0 0.0 1.0 1 HBB1_VAREX - 5.8e-60 192.7 0.5 6.6e-60 192.5 0.5 1.0 1 MYG_MOUSE - 9.1e-60 192.0 0.4 1e-59 191.9 0.4 1.0 1 HBA_ANSSE - 1e-59 191.9 0.4 1.1e-59 191.7 0.4 1.0 1 HBA_PAGLA - 1.3e-59 191.6 0.1 1.4e-59 191.4 0.1 1.0 1 HBA_ERIEU - 1.3e-59 191.5 0.0 1.5e-59 191.4 0.0 1.0 1 HBA_PROLO - 3.5e-59 190.1 0.4 3.9e-59 190.0 0.4 1.0 1 HBA_TRIOC - 1.2e-58 188.4 0.5 1.4e-58 188.2 0.5 1.0 1 HBAD_CHLME - 2.2e-58 187.6 0.0 2.5e-58 187.4 0.0 1.0 1 HBAZ_HORSE - 1.8e-57 184.6 0.2 2e-57 184.4 0.2 1.0 1 HBA_COLLI - 3.4e-57 183.7 0.1 3.9e-57 183.5 0.1 1.0 1 HBAD_PASMO - 4.1e-56 180.2 0.1 4.7e-56 180.0 0.1 1.0 1 HBBL_RANCA - 5.6e-55 176.5 0.4 6.2e-55 176.4 0.4 1.0 1 HBB2_XENTR - 2.7e-52 167.8 0.1 3e-52 167.7 0.1 1.0 1 HBA4_SALIR - 3.1e-51 164.4 0.3 3.5e-51 164.2 0.3 1.0 1 MYG_MUSAN -+ 4.9e-37 118.4 0.0 5.4e-37 118.2 0.0 1.0 1 HBB2_TRICR + 4.5e-68 219.3 2.1 4.9e-68 219.1 2.1 1.0 1 MYG_ESCGI + 5.1e-68 219.1 0.1 5.6e-68 218.9 0.1 1.0 1 HBB_MANSP + 1.6e-67 217.5 2.0 1.7e-67 217.3 2.0 1.0 1 MYG_LYCPI + 2.2e-67 217.0 0.2 2.4e-67 216.9 0.2 1.0 1 HBB_URSMA + 2.7e-67 216.7 0.3 3e-67 216.6 0.3 1.0 1 MYG_PROGU + 3.6e-67 216.3 1.1 4e-67 216.2 1.1 1.0 1 MYG_HORSE + 4e-67 216.2 0.7 4.4e-67 216.0 0.7 1.0 1 HBB_RABIT + 8.5e-67 215.1 0.8 9.4e-67 215.0 0.8 1.0 1 HBB_SPECI + 8.6e-67 215.1 1.2 9.5e-67 214.9 1.2 1.0 1 MYG_SAISC + 9.6e-67 214.9 0.1 1e-66 214.8 0.1 1.0 1 HBB_SUNMU + 1.2e-66 214.6 0.0 1.3e-66 214.4 0.0 1.0 1 HBB_COLLI + 1.4e-66 214.4 0.1 1.5e-66 214.3 0.1 1.0 1 HBB_EQUHE + 2.2e-66 213.7 0.4 2.5e-66 213.6 0.4 1.0 1 MYG_MOUSE + 3.7e-66 213.0 0.3 4e-66 212.9 0.3 1.0 1 HBB_TACAC + 4e-66 212.9 0.5 4.4e-66 212.8 0.5 1.0 1 HBB_SPETO + 1.3e-65 211.2 0.4 1.5e-65 211.1 0.4 1.0 1 HBE_PONPY + 1.6e-65 211.0 0.1 1.7e-65 210.9 0.1 1.0 1 HBB_CALAR + 2.2e-65 210.5 0.0 2.4e-65 210.4 0.0 1.0 1 HBB_ORNAN + 4.2e-65 209.6 0.2 4.6e-65 209.5 0.2 1.0 1 HBA_MESAU + 8.8e-65 208.5 0.0 9.6e-65 208.4 0.0 1.0 1 HBB_LARRI + 1.1e-64 208.2 0.1 1.2e-64 208.1 0.1 1.0 1 HBB_TRIIN + 1.7e-64 207.6 0.5 1.9e-64 207.4 0.5 1.0 1 HBA_PONPY + 4.9e-64 206.1 0.2 5.5e-64 206.0 0.2 1.0 1 HBA_MACFA + 6.2e-64 205.8 0.2 6.8e-64 205.7 0.2 1.0 1 HBA_MACSI + 9.2e-64 205.2 0.1 1e-63 205.1 0.1 1.0 1 HBA_AILME + 3.1e-63 203.5 0.3 3.4e-63 203.4 0.3 1.0 1 HBA_FRAPO + 3.1e-63 203.5 0.3 3.5e-63 203.4 0.3 1.0 1 HBA_PHACO + 3.4e-63 203.4 0.3 3.8e-63 203.2 0.3 1.0 1 HBA2_BOSMU + 3.7e-63 203.3 0.4 4.1e-63 203.1 0.4 1.0 1 HBA2_GALCR + 3.8e-63 203.3 0.0 4.1e-63 203.1 0.0 1.0 1 HBB_TUPGL + 1.1e-62 201.7 0.4 1.2e-62 201.6 0.4 1.0 1 HBA_ANSSE + 1.1e-62 201.7 0.3 1.2e-62 201.6 0.3 1.0 1 HBA_PAGLA + 2e-62 200.9 0.1 2.2e-62 200.8 0.1 1.0 1 HBA_ERIEU + 2.1e-62 200.8 0.0 2.3e-62 200.7 0.0 1.0 1 HBA_PROLO + 4.2e-62 199.9 0.4 4.6e-62 199.7 0.4 1.0 1 HBA_TRIOC + 9.3e-62 198.7 0.1 1.1e-61 198.5 0.1 1.0 1 HBB1_VAREX + 5.9e-61 196.1 0.4 6.5e-61 196.0 0.4 1.0 1 HBAD_CHLME + 9.8e-61 195.4 0.1 1.1e-60 195.3 0.1 1.0 1 HBAZ_HORSE + 2.2e-60 194.2 0.2 2.5e-60 194.1 0.2 1.0 1 HBA_COLLI + 1.5e-59 191.5 0.1 1.7e-59 191.4 0.1 1.0 1 HBAD_PASMO + 1.3e-57 185.2 0.2 1.6e-57 185.0 0.2 1.0 1 HBBL_RANCA + 3e-56 180.9 0.7 3.5e-56 180.6 0.7 1.0 1 HBB2_XENTR + 2.9e-55 177.6 0.4 3.2e-55 177.5 0.4 1.0 1 MYG_MUSAN + 7.5e-55 176.3 0.1 8.3e-55 176.2 0.1 1.0 1 HBA4_SALIR ++ 1.7e-38 123.2 0.0 1.8e-38 123.1 0.0 1.0 1 HBB2_TRICR Domain annotation for each sequence (and alignments): +>> MYG_ESCGI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 219.1 2.1 4.9e-68 4.9e-68 2 154 .] 1 153 [] 1 153 [] 0.99 + + Alignments for each domain: + == domain 1 score: 219.1 bits; conditional E-value: 4.9e-68 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + vlsd+e+qlv ++w+kvead+a++Gq++L+rlf+ +Pet e+FdkF++lk+eae+k+s+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++++p++f++++qaa++k+lel+++++aakYkelgfqg + MYG_ESCGI 1 VLSDAEWQLVLNIWAKVEADVAGHGQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKYKELGFQG 153 + 69******************************************************************************************************************************************************8 PP + >> HBB_MANSP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 211.9 0.1 6.8e-66 6.8e-66 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 218.9 0.1 5.6e-68 5.6e-68 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 211.9 bits; conditional E-value: 6.8e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v+++wgkv++d e+G+eaL rl+vvyP+t+++Fd+F+dl+s+++v+g++kvkahgkkvl a+++++++ld+lkg++++LselH++kl+vdpenfkll++vlv+vla++f+keftp+vqaa++k+++ vanala+kY - HBB_MANSP 6 EEKTAVTTLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 59***********886..669************************************************************************************************************************9 PP + == domain 1 score: 218.9 bits; conditional E-value: 5.6e-68 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l+ eek++v+++wgkv++d e+G+eaL rl+vvyP+t+++Fd+F+dl+s+++v+g++kvkahgkkvl a+++++++ld+lkg++++LselH++kl+vdpenfkll++vlv+vla++f+keftp+vqaa++k+++ vanala+kY + HBB_MANSP 3 LTPEEKTAVTTLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 7899************886..669************************************************************************************************************************* PP + +>> MYG_LYCPI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 217.3 2.0 1.7e-67 1.7e-67 3 154 .] 2 153 .] 1 153 [] 1.00 + + Alignments for each domain: + == domain 1 score: 217.3 bits; conditional E-value: 1.7e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + lsd+e+q v ++wgkve+d a++Gqe+L+rlf+++Pet ++FdkF++lk+e+e+kgs+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++k++++f+++++aa++k+lel++n++aakYkelgfqg + MYG_LYCPI 2 LSDGEWQIVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP >> HBB_URSMA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 210.1 0.1 2.5e-65 2.5e-65 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 216.9 0.2 2.4e-67 2.4e-67 3 147 .. 3 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 216.9 bits; conditional E-value: 2.4e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l+ eek+lv+ +wgkv++d e+G+eaL rl+vvyP+t+++Fd+F+dl+s++++++++kvkahgkkvl+++++++k+ld+lkg+++kLselH++kl+vdpenfkll++vlv+vla++f+keftp+vqaa++k+++ vanala+kY + HBB_URSMA 3 LTGEEKSLVTGLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 7899************886..669************************************************************************************************************************* PP + +>> MYG_PROGU + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 216.6 0.3 3e-67 3e-67 3 154 .] 2 153 .] 1 153 [] 0.99 Alignments for each domain: - == domain 1 score: 210.1 bits; conditional E-value: 2.5e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek+lv+ +wgkv++d e+G+eaL rl+vvyP+t+++Fd+F+dl+s++++++++kvkahgkkvl+++++++k+ld+lkg+++kLselH++kl+vdpenfkll++vlv+vla++f+keftp+vqaa++k+++ vanala+kY - HBB_URSMA 6 EEKSLVTGLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 599**********886..669************************************************************************************************************************9 PP - ->> HBB_COLLI + == domain 1 score: 216.6 bits; conditional E-value: 3e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + lsd+e+qlv +vwgkve+d +++Gqe+L+rlf+ +Pet e+FdkF++lk+e+e+++s+++k+hg++vltalg ++kk+++++++l++L+++Hatk+k+++++++++se++++vl++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_PROGU 2 LSDGEWQLVLNVWGKVEGDLSGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP + +>> MYG_HORSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 207.7 0.0 1.4e-64 1.4e-64 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 216.2 1.1 4e-67 4e-67 3 154 .] 2 153 .] 1 153 [] 1.00 Alignments for each domain: - == domain 1 score: 207.7 bits; conditional E-value: 1.4e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eekql++s+wgkv++ a++GaeaL+rl++vyP+t+++F++F++l+s+++++g+++vkahgkkvlt++g+avk+ld++kg++++LselH++kl+vdpenf+ll+++lv++laa+f+k+ftpe+qaa++kl+++va+ala+kY - HBB_COLLI 6 EEKQLITSIWGKVNV--ADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKY 145 - 69***********75..789*************************************************************************************************************************9 PP + == domain 1 score: 216.2 bits; conditional E-value: 4e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + lsd+e+q+v +vwgkvead a++Gqe+L+rlf+ +Pet e+FdkF++lk+eae+k+s+++k+hg+ vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_HORSE 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP >> HBB_RABIT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 207.6 0.3 1.5e-64 1.5e-64 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 216.0 0.7 4.4e-67 4.4e-67 3 147 .. 3 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 216.0 bits; conditional E-value: 4.4e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls+eek++v+++wgkv+++ e+G+eaL rl+vvyP+t+++F++F+dl+s+++v++++kvkahgkkvl+a++e++++ld+lkg+++kLselH++kl+vdpenf+ll++vlv+vl+++f+keftp+vqaa++k+++ vanala+kY + HBB_RABIT 3 LSSEEKSAVTALWGKVNVE--EVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 89**************875..679************************************************************************************************************************* PP + +>> HBB_SPECI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 215.0 0.8 9.4e-67 9.4e-67 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 207.6 bits; conditional E-value: 1.5e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v+++wgkv+++ e+G+eaL rl+vvyP+t+++F++F+dl+s+++v++++kvkahgkkvl+a++e++++ld+lkg+++kLselH++kl+vdpenf+ll++vlv+vl+++f+keftp+vqaa++k+++ vanala+kY - HBB_RABIT 6 EEKSAVTALWGKVNVE--EVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 599**********875..679************************************************************************************************************************9 PP + == domain 1 score: 215.0 bits; conditional E-value: 9.4e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + lsd+ek++++++wgkv +aae+G+eaL rl+vvyP+t+++Fd+F+dl+s+++v+g+akvkahgkkv++++++++k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k+++ vanala+kY + HBB_SPECI 3 LSDGEKNAISTAWGKV--HAAEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKY 145 + 9***************..67889************************************************************************************************************************** PP + +>> MYG_SAISC + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 214.9 1.2 9.5e-67 9.5e-67 3 154 .] 2 153 .] 1 153 [] 0.99 + + Alignments for each domain: + == domain 1 score: 214.9 bits; conditional E-value: 9.5e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + lsd+e+qlv ++wgkvead ++Gqe+L+ lf+ +Pet e+FdkF++lkse+e+k+s+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++l+s+++v+vl++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_SAISC 2 LSDGEWQLVLNIWGKVEADIPSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP >> HBB_SUNMU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 206.7 0.0 2.8e-64 2.8e-64 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 214.8 0.1 1e-66 1e-66 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 206.7 bits; conditional E-value: 2.8e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek+ v+ +wgkv++d e+GaeaL rl+vvyP+t+++Fd+F+dl+s+++v+g++kvkahgkkvl++lge+v +ld+lkg+++kLselH++kl+vdpenf+ll++vlvvvla+kf+keftp vqaa++k+++ vanala+kY - HBB_SUNMU 6 EEKACVTGLWGKVNED--EVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKY 145 - 599**********865..679************************************************************************************************************************9 PP + == domain 1 score: 214.8 bits; conditional E-value: 1e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls eek+ v+ +wgkv++d e+G+eaL rl+vvyP+t+++Fd+F+dl+s+++v+g++kvkahgkkvl++lge+v +ld+lkg+++kLselH++kl+vdpenf+ll++vlvvvla+kf+keftp vqaa++k+++ vanala+kY + HBB_SUNMU 3 LSGEEKACVTGLWGKVNED--EVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKY 145 + 899*************865..679************************************************************************************************************************* PP + +>> HBB_COLLI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 214.4 0.0 1.3e-66 1.3e-66 4 147 .. 4 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 214.4 bits; conditional E-value: 1.3e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + s+eekql++s+wgkv++ a++G+eaL+rl++vyP+t+++F++F++l+s+++++g+++vkahgkkvlt++g+avk+ld++kg++++LselH++kl+vdpenf+ll+++lv++laa+f+k+ftpe+qaa++kl+++va+ala+kY + HBB_COLLI 4 SAEEKQLITSIWGKVNV--ADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKY 145 + 899************75..789************************************************************************************************************************** PP >> HBB_EQUHE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 206.1 0.1 4.1e-64 4.1e-64 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 214.3 0.1 1.5e-66 1.5e-66 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 206.1 bits; conditional E-value: 4.1e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v ++w+kv++ +e+G+eaL rl+vvyP+t+++Fd+F+dl+++a+v+g++kvkahgkkvl+++ge+v++ld+lkg++++LselH++kl+vdpenf+ll++vlvvvla++f+k+ftpe qa+++k+++ vanala+kY - HBB_EQUHE 6 EEKAAVLALWDKVNE--EEVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKY 145 - 599**********75..5789************************************************************************************************************************9 PP - ->> HBB_SPECI + == domain 1 score: 214.3 bits; conditional E-value: 1.5e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls eek++v ++w+kv++ +e+G+eaL rl+vvyP+t+++Fd+F+dl+++a+v+g++kvkahgkkvl+++ge+v++ld+lkg++++LselH++kl+vdpenf+ll++vlvvvla++f+k+ftpe qa+++k+++ vanala+kY + HBB_EQUHE 3 LSGEEKAAVLALWDKVNE--EEVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKY 145 + 899*************75..5789************************************************************************************************************************* PP + +>> MYG_MOUSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 205.7 0.4 5.7e-64 5.7e-64 2 142 .] 7 145 .. 6 145 .. 0.98 + 1 ! 213.6 0.4 2.5e-66 2.5e-66 3 154 .] 2 153 .] 1 153 [] 1.00 Alignments for each domain: - == domain 1 score: 205.7 bits; conditional E-value: 5.7e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ek++++++wgkv +aae+GaeaL rl+vvyP+t+++Fd+F+dl+s+++v+g+akvkahgkkv++++++++k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k+++ vanala+kY - HBB_SPECI 7 EKNAISTAWGKV--HAAEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKY 145 - 89**********..67889*************************************************************************************************************************9 PP + == domain 1 score: 213.6 bits; conditional E-value: 2.5e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + lsd+e+qlv +vwgkvead a++Gqe+L+ lf+++Pet ++FdkF++lkse+++kgs+++k+hg +vltalg+++kk++++++++++L+++Hatk+k+++++++++se+++ vl+++++++f++++q+a++k+lel++n++aakYkelgfqg + MYG_MOUSE 2 LSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP >> HBB_TACAC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 205.4 0.2 7.1e-64 7.1e-64 2 142 .] 7 145 .. 6 145 .. 0.98 + 1 ! 212.9 0.3 4e-66 4e-66 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 205.4 bits; conditional E-value: 7.1e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ek++v+++wg+v+++ e+G+eaL rl+vvyP+t+++F++F+dl+s+++v+g+akvkahg kvlt++g+a+k+ld+lkg+++kLselH++kl+vdpenf+ l++vlvvvla++f+keftpe+qaa++kl++ v++ala+kY - HBB_TACAC 7 EKTAVTNLWGHVNVN--ELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKY 145 - 89**********875..779************************************************************************************************************************9 PP - ->> HBE_PONPY - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 205.2 0.1 7.9e-64 7.9e-64 1 142 [] 6 145 .. 6 145 .. 0.98 - - Alignments for each domain: - == domain 1 score: 205.2 bits; conditional E-value: 7.9e-64 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v+s+w+k+++++a G+eaL rl+vvyP+t+++Fd+F++l+s++++ g++kvkahgkkvlt++g+a+k++d+lk++++kLselH++kl+vdpenfkll++v+v++la++f+keftpevqaa++kl+++va ala+kY - HBE_PONPY 6 EEKAAVTSLWSKMNVEEA--GGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKY 145 - 599**********88755..9************************************************************************************************************************9 PP + == domain 1 score: 212.9 bits; conditional E-value: 4e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls +ek++v+++wg+v+++ e+G+eaL rl+vvyP+t+++F++F+dl+s+++v+g+akvkahg kvlt++g+a+k+ld+lkg+++kLselH++kl+vdpenf+ l++vlvvvla++f+keftpe+qaa++kl++ v++ala+kY + HBB_TACAC 3 LSGSEKTAVTNLWGHVNVN--ELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKY 145 + 899*************875..779************************************************************************************************************************* PP >> HBB_SPETO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 204.8 0.2 1.1e-63 1.1e-63 2 142 .] 7 145 .. 6 145 .. 0.98 + 1 ! 212.8 0.5 4.4e-66 4.4e-66 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 204.8 bits; conditional E-value: 1.1e-63 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ek++++++wgkv+ aaeiGaeaL rl+vvyP+t+++Fd+F+dl+s+++v+g+akvkahgkkv++++++++k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k+++ vanal++kY - HBB_SPETO 7 EKNAISTAWGKVN--AAEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKY 145 - 89**********7..5789*************************************************************************************************************************9 PP + == domain 1 score: 212.8 bits; conditional E-value: 4.4e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l+d+ek++++++wgkv+ aaeiG+eaL rl+vvyP+t+++Fd+F+dl+s+++v+g+akvkahgkkv++++++++k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k+++ vanal++kY + HBB_SPETO 3 LTDGEKNAISTAWGKVN--AAEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKY 145 + 899*************7..5789************************************************************************************************************************** PP + +>> HBE_PONPY + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 211.1 0.4 1.5e-65 1.5e-65 4 147 .. 4 145 .. 1 146 [] 0.97 + + Alignments for each domain: + == domain 1 score: 211.1 bits; conditional E-value: 1.5e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ++eek++v+s+w+k+++++a G+eaL rl+vvyP+t+++Fd+F++l+s++++ g++kvkahgkkvlt++g+a+k++d+lk++++kLselH++kl+vdpenfkll++v+v++la++f+keftpevqaa++kl+++va ala+kY + HBE_PONPY 4 TAEEKAAVTSLWSKMNVEEA--GGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKY 145 + 689************98755..9************************************************************************************************************************* PP >> HBB_CALAR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 204.1 0.1 1.8e-63 1.8e-63 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 210.9 0.1 1.7e-65 1.7e-65 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 204.1 bits; conditional E-value: 1.8e-63 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v+++wgkv++d e+G+eaL rl+vvyP+t+++F++F+dl+++++v++++kvkahgkkvl a+++++++ld+lkg++++LselH++kl+vdpenf+ll++vlv+vla++f+keftp vqaa++k+++ vanala+kY - HBB_CALAR 6 EEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKY 145 - 599**********886..669************************************************************************************************************************9 PP + == domain 1 score: 210.9 bits; conditional E-value: 1.7e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l+ eek++v+++wgkv++d e+G+eaL rl+vvyP+t+++F++F+dl+++++v++++kvkahgkkvl a+++++++ld+lkg++++LselH++kl+vdpenf+ll++vlv+vla++f+keftp vqaa++k+++ vanala+kY + HBB_CALAR 3 LTGEEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKY 145 + 7899************886..669************************************************************************************************************************* PP >> HBB_ORNAN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 202.5 0.0 5.4e-63 5.4e-63 2 142 .] 7 145 .. 6 145 .. 0.98 + 1 ! 210.4 0.0 2.4e-65 2.4e-65 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 202.5 bits; conditional E-value: 5.4e-63 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ek++v+++wgkv+ + e+G+eaL rl+vvyP+t+++F+ F+dl+s+ +v+g++kvkahg kvlt++g+a+k+lddlkg+++kLselH++kl+vdpenf+ l++vl+vvla++f+k+f+pevqaa++kl++ va+al +kY - HBB_ORNAN 7 EKSAVTNLWGKVNIN--ELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKY 145 - 89**********875..779************************************************************************************************************************9 PP + == domain 1 score: 210.4 bits; conditional E-value: 2.4e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls +ek++v+++wgkv+ + e+G+eaL rl+vvyP+t+++F+ F+dl+s+ +v+g++kvkahg kvlt++g+a+k+lddlkg+++kLselH++kl+vdpenf+ l++vl+vvla++f+k+f+pevqaa++kl++ va+al +kY + HBB_ORNAN 3 LSGGEKSAVTNLWGKVNIN--ELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKY 145 + 899*************875..779************************************************************************************************************************* PP + +>> HBA_MESAU + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 209.5 0.2 4.6e-65 4.6e-65 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 209.5 bits; conditional E-value: 4.6e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k++++++wgk++++a e+G+eaLer+f vyP+tk+yF++Fd + +gsa+vk+hgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p++ftp+v+a+ldk++++v+++l++kY+ + HBA_MESAU 1 VLSAKDKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHFDVS------HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBB_LARRI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 201.7 0.0 9.5e-63 9.5e-63 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 208.4 0.0 9.6e-65 9.6e-65 4 147 .. 4 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 201.7 bits; conditional E-value: 9.5e-63 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eekql++ +wgkv++ a++GaeaL+rl++vyP+t+++F +F++l+s+++++g++ v+ahgkkvlt++geavk+ld++k+++++LselH++kl+vdpenf+ll+++l++vlaa+f+k+ftp+ qaa++kl+++va+ala+kY - HBB_LARRI 6 EEKQLITGLWGKVNV--ADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKY 145 - 69***********75..789*************************************************************************************************************************9 PP + == domain 1 score: 208.4 bits; conditional E-value: 9.6e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + s+eekql++ +wgkv++ a++G+eaL+rl++vyP+t+++F +F++l+s+++++g++ v+ahgkkvlt++geavk+ld++k+++++LselH++kl+vdpenf+ll+++l++vlaa+f+k+ftp+ qaa++kl+++va+ala+kY + HBB_LARRI 4 SAEEKQLITGLWGKVNV--ADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKY 145 + 899************75..789************************************************************************************************************************** PP >> HBB_TRIIN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 201.2 0.1 1.3e-62 1.3e-62 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 208.1 0.1 1.2e-64 1.2e-64 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 201.2 bits; conditional E-value: 1.3e-62 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek+lv +w+kv++ +e+G+eaL rl+vvyP+t+++F++F+dl+s++++++++kvkahg+kv+t++g+++k+l+dlkga+++LselH++kl+vdpenf+ll++vlv+vla++f+kef+pe+qaa++k+++ vanala+kY - HBB_TRIIN 6 EEKALVIGLWAKVNV--KEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKY 145 - 599**********76..689*************************************************************************************************************************9 PP - ->> HBA_MESAU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 199.7 0.2 3.9e-62 3.9e-62 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 199.7 bits; conditional E-value: 3.9e-62 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++++++wgk++++a e+GaeaLer+f vyP+tk+yF++Fd + +gsa+vk+hgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p++ftp+v+a+ldk++++v+++l++kY - HBA_MESAU 6 DKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHFDVS------HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKY 140 - 89****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 208.1 bits; conditional E-value: 1.2e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l+ eek+lv +w+kv++ +e+G+eaL rl+vvyP+t+++F++F+dl+s++++++++kvkahg+kv+t++g+++k+l+dlkga+++LselH++kl+vdpenf+ll++vlv+vla++f+kef+pe+qaa++k+++ vanala+kY + HBB_TRIIN 3 LTPEEKALVIGLWAKVNV--KEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKY 145 + 7899************76..689************************************************************************************************************************** PP >> HBA_PONPY # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 197.9 0.8 1.4e-61 1.4e-61 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 207.4 0.5 1.9e-64 1.9e-64 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 197.9 bits; conditional E-value: 1.4e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk++wgkv+a+a ++GaeaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY - HBA_PONPY 6 DKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 9*****************************************96......9*****************************************************************************************9 PP - ->> MYG_ESCGI - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 197.0 2.3 2.8e-61 2.8e-61 2 142 .] 6 146 .. 5 146 .. 0.99 - - Alignments for each domain: - == domain 1 score: 197.0 bits; conditional E-value: 2.8e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+qlv ++w+kvead+a++G+++L+rlf+ +Pet e+FdkF++lk+eae+k+s+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++++p++f++++qaa++k+lel+++++aakY - MYG_ESCGI 6 EWQLVLNIWAKVEADVAGHGQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKY 146 - 9*******************************************************************************************************************************************9 PP + == domain 1 score: 207.4 bits; conditional E-value: 1.9e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls ++k++vk++wgkv+a+a ++G+eaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_PONPY 1 VLSPADKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_MACFA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.5 0.3 3.8e-61 3.8e-61 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 206.0 0.2 5.5e-64 5.5e-64 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 196.5 bits; conditional E-value: 3.8e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk++wgkv+++a e+GaeaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY - HBA_MACFA 6 DKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 9*****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 206.0 bits; conditional E-value: 5.5e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls ++k++vk++wgkv+++a e+G+eaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_MACFA 1 VLSPADKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_MACSI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.2 0.3 4.7e-61 4.7e-61 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 205.7 0.2 6.8e-64 6.8e-64 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 196.2 bits; conditional E-value: 4.7e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk++wgkv+++a e+GaeaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY - HBA_MACSI 6 DKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 9*****************************************96......9*****************************************************************************************9 PP - ->> MYG_LYCPI - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.8 2.5 6.2e-61 6.2e-61 2 142 .] 6 146 .. 5 146 .. 0.99 - - Alignments for each domain: - == domain 1 score: 195.8 bits; conditional E-value: 6.2e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+q v ++wgkve+d a++G+e+L+rlf+++Pet ++FdkF++lk+e+e+kgs+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++k++++f+++++aa++k+lel++n++aakY - MYG_LYCPI 6 EWQIVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKY 146 - 9*******************************************************************************************************************************************9 PP + == domain 1 score: 205.7 bits; conditional E-value: 6.8e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls ++k++vk++wgkv+++a e+G+eaLer+f ++P+tk+yF++Fd + +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_MACSI 1 VLSPADKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_AILME # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.7 0.1 6.8e-61 6.8e-61 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 195.7 bits; conditional E-value: 6.8e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk+ w+k++++a e+G+eaLer f ++P+tk+yF++Fd + gsa+vkahgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY - HBA_AILME 6 DKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKY 140 - 9*****************************************96......9*****************************************************************************************9 PP - ->> MYG_PROGU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.5 0.3 8e-61 8e-61 2 142 .] 6 146 .. 5 146 .. 0.99 - - Alignments for each domain: - == domain 1 score: 195.5 bits; conditional E-value: 8e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+qlv +vwgkve+d +++G+e+L+rlf+ +Pet e+FdkF++lk+e+e+++s+++k+hg++vltalg ++kk+++++++l++L+++Hatk+k+++++++++se++++vl++k+p++f++++q+a++k+lel++n++aakY - MYG_PROGU 6 EWQLVLNVWGKVEGDLSGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKY 146 - 9*******************************************************************************************************************************************9 PP - ->> HBB_TUPGL - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.1 0.0 1e-60 1e-60 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 205.1 0.1 1e-63 1e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 195.1 bits; conditional E-value: 1e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++v+ +wgkv+ +++G++ L l++vyP+t+++Fd+F+dl+s+++v++++kvkahgkkvlt++++++++ld+lkg+++kLselH++kl+vdpenf+ll++vlv vla++f+ eftp+vqaa++k+++ vanala+kY - HBB_TUPGL 6 EEKAAVTGLWGKVDL--EKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKY 145 - 599**********76..567999**********************************************************************************************************************9 PP - ->> MYG_HORSE - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 194.7 1.5 1.3e-60 1.3e-60 2 142 .] 6 146 .. 5 146 .. 0.99 - - Alignments for each domain: - == domain 1 score: 194.7 bits; conditional E-value: 1.3e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+q+v +vwgkvead a++G+e+L+rlf+ +Pet e+FdkF++lk+eae+k+s+++k+hg+ vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vl++k+p++f++++q+a++k+lel++n++aakY - MYG_HORSE 6 EWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKY 146 - 9*******************************************************************************************************************************************9 PP - ->> HBA2_GALCR - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 194.1 0.6 2.2e-60 2.2e-60 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 194.1 bits; conditional E-value: 2.2e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk++w+kv+a+a ++GaeaLer+f ++P+tk+yF++Fd + +gs++vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfkll ++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY - HBA2_GALCR 6 DKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSTQVKGHGKKVADALTNAVLHVDDMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKY 140 - 89****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 205.1 bits; conditional E-value: 1e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls ++k++vk+ w+k++++a e+G+eaLer f ++P+tk+yF++Fd + gsa+vkahgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA_AILME 1 VLSPADKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_FRAPO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.7 0.3 2.8e-60 2.8e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 203.4 0.3 3.4e-63 3.4e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.7 bits; conditional E-value: 2.8e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk ++gk++++a+++GaeaLer+f++yP+tk+yF++Fd + +gsa+vk+hgkkv++al ea +++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v n+l+akY - HBA_FRAPO 6 DKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHFDLS------HGSAQVKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKY 140 - 9*****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 203.4 bits; conditional E-value: 3.4e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k++vk ++gk++++a+++G+eaLer+f++yP+tk+yF++Fd + +gsa+vk+hgkkv++al ea +++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v n+l+akY+ + HBA_FRAPO 1 VLSAADKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHFDLS------HGSAQVKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_PHACO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.7 0.4 2.9e-60 2.9e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 203.4 0.3 3.5e-63 3.5e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.7 bits; conditional E-value: 2.9e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk +++k+ ++a+e+GaeaLer+f++yP+tk+yF++Fd + +gsa++k+hgkkv++al eav+++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v ++l+akY - HBA_PHACO 6 DKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHFDLS------HGSAQIKGHGKKVVAALIEAVNHIDDITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKY 140 - 9*****************************************96......9*****************************************************************************************9 PP - ->> MYG_SAISC - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.6 1.5 3e-60 3e-60 2 142 .] 6 146 .. 5 146 .. 0.99 - - Alignments for each domain: - == domain 1 score: 193.6 bits; conditional E-value: 3e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+qlv ++wgkvead ++G+e+L+ lf+ +Pet e+FdkF++lkse+e+k+s+++k+hg++vltalg ++kk+++++++lk+L+++Hatk+k+++++++l+s+++v+vl++k+p++f++++q+a++k+lel++n++aakY - MYG_SAISC 6 EWQLVLNIWGKVEADIPSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKY 146 - 9*******************************************************************************************************************************************9 PP + == domain 1 score: 203.4 bits; conditional E-value: 3.5e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k++vk +++k+ ++a+e+G+eaLer+f++yP+tk+yF++Fd + +gsa++k+hgkkv++al eav+++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v ++l+akY+ + HBA_PHACO 1 VLSAADKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHFDLS------HGSAQIKGHGKKVVAALIEAVNHIDDITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA2_BOSMU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.6 0.2 3.1e-60 3.1e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 203.2 0.3 3.8e-63 3.8e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.6 bits; conditional E-value: 3.1e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k +vk++wgkv+++aae+GaeaLer+f ++P+tk+yF++Fd + +gsa+vk+hg kv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls+ l+v+la+++p++ftp+v+a+ldk+l+ v+++l++kY - HBA2_BOSMU 6 DKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGAKVAAALTKAVGHLDDLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKY 140 - 899***************************************96......9*****************************************************************************************9 PP - ->> HBB1_VAREX + == domain 1 score: 203.2 bits; conditional E-value: 3.8e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k +vk++wgkv+++aae+G+eaLer+f ++P+tk+yF++Fd + +gsa+vk+hg kv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls+ l+v+la+++p++ftp+v+a+ldk+l+ v+++l++kY+ + HBA2_BOSMU 1 VLSAADKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGAKVAAALTKAVGHLDDLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP + +>> HBA2_GALCR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.0 0.0 4.5e-60 4.5e-60 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 203.1 0.4 4.1e-63 4.1e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.0 bits; conditional E-value: 4.5e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eekql+ s+wgk+++ iG+e+L+ l+v yP+t+++F++F++l+s+++++g+++vkahgkkvlt++g+a+k+ld++k++++kLselH++kl+vdp+nfkll++vlv+vla +++keftp+ +aa++kl+++v+++la++Y - HBB1_VAREX 6 EEKQLICSLWGKIDVG--LIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRY 145 - 69***********765..569***********************************************************************************************************************99 PP - ->> MYG_MOUSE + == domain 1 score: 203.1 bits; conditional E-value: 4.1e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls +k++vk++w+kv+a+a ++G+eaLer+f ++P+tk+yF++Fd + +gs++vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfkll ++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA2_GALCR 1 VLSPTDKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSTQVKGHGKKVADALTNAVLHVDDMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKYR 141 + 6999*******************************************96......9******************************************************************************************7 PP + +>> HBB_TUPGL # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 192.5 0.5 6.6e-60 6.6e-60 2 142 .] 6 146 .. 5 146 .. 0.99 + 1 ! 203.1 0.0 4.1e-63 4.1e-63 3 147 .. 3 145 .. 1 146 [] 0.97 Alignments for each domain: - == domain 1 score: 192.5 bits; conditional E-value: 6.6e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+qlv +vwgkvead a++G+e+L+ lf+++Pet ++FdkF++lkse+++kgs+++k+hg +vltalg+++kk++++++++++L+++Hatk+k+++++++++se+++ vl+++++++f++++q+a++k+lel++n++aakY - MYG_MOUSE 6 EWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKY 146 - 9*******************************************************************************************************************************************9 PP + == domain 1 score: 203.1 bits; conditional E-value: 4.1e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ls eek++v+ +wgkv+ +++G++ L l++vyP+t+++Fd+F+dl+s+++v++++kvkahgkkvlt++++++++ld+lkg+++kLselH++kl+vdpenf+ll++vlv vla++f+ eftp+vqaa++k+++ vanala+kY + HBB_TUPGL 3 LSGEEKAAVTGLWGKVDL--EKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKY 145 + 899*************75..567999*********************************************************************************************************************** PP >> HBA_ANSSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.9 0.4 1e-59 1e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 201.6 0.4 1.2e-62 1.2e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.9 bits; conditional E-value: 1e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k +vk+v+gk++++a+e+Gae+L+r+f+++P+tk+yF++Fd + gsa++kahgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfk+l+++++vvla ++p+ +tpev+a++dk+l++va++l+akY - HBA_ANSSE 6 DKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHFDLQ------PGSAQIKAHGKKVAAALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKY 140 - 899***************************************96......9*****************************************************************************************9 PP + == domain 1 score: 201.6 bits; conditional E-value: 1.2e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k +vk+v+gk++++a+e+G+e+L+r+f+++P+tk+yF++Fd + gsa++kahgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfk+l+++++vvla ++p+ +tpev+a++dk+l++va++l+akY+ + HBA_ANSSE 1 VLSAADKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHFDLQ------PGSAQIKAHGKKVAAALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_PAGLA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.7 0.4 1.1e-59 1.1e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 201.6 0.3 1.2e-62 1.2e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.7 bits; conditional E-value: 1.1e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k+++k+ w+k++++a e+GaeaLer f+++P+tk+yF++Fd + +gsa+vkahgkkv++al+ av +l+dl +al++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v++aldk++++v+++l++kY - HBA_PAGLA 6 DKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHFDLS------HGSAQVKAHGKKVADALTLAVGHLEDLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKY 140 - 9*****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 201.6 bits; conditional E-value: 1.2e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k+++k+ w+k++++a e+G+eaLer f+++P+tk+yF++Fd + +gsa+vkahgkkv++al+ av +l+dl +al++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v++aldk++++v+++l++kY+ + HBA_PAGLA 1 VLSSADKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHFDLS------HGSAQVKAHGKKVADALTLAVGHLEDLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKYR 141 + 69*********************************************96......9******************************************************************************************7 PP >> HBA_ERIEU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.4 0.1 1.4e-59 1.4e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 200.8 0.1 2.2e-62 2.2e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.4 bits; conditional E-value: 1.4e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk+ wgk++++ e+G+eaL r+f+ +P+tk+yF++Fd gsa+vk+hgkkv++al++av++ldd+ gal++Ls+lHa+kl+vdp+nfklls++l+v+la ++p++ftp+v+a+ldk+l++va++l++kY - HBA_ERIEU 6 DKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHFDLN------PGSAQVKGHGKKVADALTTAVNNLDDVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKY 140 - 89****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 200.8 bits; conditional E-value: 2.2e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+ +k++vk+ wgk++++ e+G+eaL r+f+ +P+tk+yF++Fd gsa+vk+hgkkv++al++av++ldd+ gal++Ls+lHa+kl+vdp+nfklls++l+v+la ++p++ftp+v+a+ldk+l++va++l++kY+ + HBA_ERIEU 1 VLSATDKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHFDLN------PGSAQVKGHGKKVADALTTAVNNLDDVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_PROLO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.4 0.0 1.5e-59 1.5e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 200.7 0.0 2.3e-62 2.3e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.4 bits; conditional E-value: 1.5e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k+++k+ w+k++++a e+G+eaLer f ++P+tk+yF++Fd + gsa+vkahgkkv++al+ av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY - HBA_PROLO 6 DKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTLAVGHLDDLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKY 140 - 89****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 200.7 bits; conditional E-value: 2.3e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls ++k+++k+ w+k++++a e+G+eaLer f ++P+tk+yF++Fd + gsa+vkahgkkv++al+ av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+la+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA_PROLO 1 VLSPADKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTLAVGHLDDLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKYR 141 + 699********************************************96......9******************************************************************************************7 PP >> HBA_TRIOC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 190.0 0.4 3.9e-59 3.9e-59 1 142 [] 5 140 .. 5 140 .. 0.99 + 1 ! 199.7 0.4 4.6e-62 4.6e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 190.0 bits; conditional E-value: 3.9e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ++k++vk+v++k++++a+++Gae+Ler+f++yP tk+yF++Fd + +gsa++kahgkkv+ al eav+++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+ +tpev+a+ldk+l++v n+l+akY - HBA_TRIOC 5 NDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHFDLH------HGSAQIKAHGKKVVGALIEAVNHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKY 140 - 59*****************************************95......9*****************************************************************************************9 PP + == domain 1 score: 199.7 bits; conditional E-value: 4.6e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k++vk+v++k++++a+++G+e+Ler+f++yP tk+yF++Fd + +gsa++kahgkkv+ al eav+++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+ +tpev+a+ldk+l++v n+l+akY+ + HBA_TRIOC 1 VLSANDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHFDLH------HGSAQIKAHGKKVVGALIEAVNHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKYR 141 + 69*********************************************95......9******************************************************************************************7 PP + +>> HBB1_VAREX + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 198.5 0.1 1.1e-61 1.1e-61 4 147 .. 4 145 .. 2 146 .] 0.97 + + Alignments for each domain: + == domain 1 score: 198.5 bits; conditional E-value: 1.1e-61 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ++eekql+ s+wgk+++ iG+e+L+ l+v yP+t+++F++F++l+s+++++g+++vkahgkkvlt++g+a+k+ld++k++++kLselH++kl+vdp+nfkll++vlv+vla +++keftp+ +aa++kl+++v+++la++Y + HBB1_VAREX 4 TAEEKQLICSLWGKIDVG--LIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRY 145 + 579************765..569************************************************************************************************************************* PP >> HBAD_CHLME # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 188.2 0.5 1.4e-58 1.4e-58 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 196.0 0.4 6.5e-61 6.5e-61 3 148 .. 2 141 .] 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 188.2 bits; conditional E-value: 1.4e-58 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k+l++++w+kv ++++e+G+eaL+r+f +yP+tk+yF++Fd + gs++v++hgkkv++alg+avk+ld+l++al++Ls+lHa++l+vdp nfkll++++ vvla++++k+++pe++aa+dk+l++va +la+kY - HBAD_CHLME 6 DKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHFDLH------PGSEQVRGHGKKVAAALGNAVKSLDNLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKY 140 - 89****************************************95......9*****************************************************************************************9 PP + == domain 1 score: 196.0 bits; conditional E-value: 6.5e-61 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + l++++k+l++++w+kv ++++e+G+eaL+r+f +yP+tk+yF++Fd + gs++v++hgkkv++alg+avk+ld+l++al++Ls+lHa++l+vdp nfkll++++ vvla++++k+++pe++aa+dk+l++va +la+kY+ + HBAD_CHLME 2 LTADDKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHFDLH------PGSEQVRGHGKKVAAALGNAVKSLDNLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKYR 141 + 7899******************************************95......9******************************************************************************************7 PP >> HBAZ_HORSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 187.4 0.0 2.5e-58 2.5e-58 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 195.3 0.1 1.1e-60 1.1e-60 3 148 .. 2 141 .] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 187.4 bits; conditional E-value: 2.5e-58 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+++v s+wgk++++a+++G+eaL+rlf +yP+tk+yF++Fd + +gs++++ahg+kv++a+g+avk++d+++gal+kLselHa+ l+vdp+nfk+ls++l+v+la+++p++ft++++aa+dk+l++v+++l++kY - HBAZ_HORSE 6 ERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHFDLH------EGSPQLRAHGSKVAAAVGDAVKSIDNVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKY 140 - 899***************************************95......9*****************************************************************************************9 PP + == domain 1 score: 195.3 bits; conditional E-value: 1.1e-60 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + l+++e+++v s+wgk++++a+++G+eaL+rlf +yP+tk+yF++Fd + +gs++++ahg+kv++a+g+avk++d+++gal+kLselHa+ l+vdp+nfk+ls++l+v+la+++p++ft++++aa+dk+l++v+++l++kY+ + HBAZ_HORSE 2 LTKAERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHFDLH------EGSPQLRAHGSKVAAAVGDAVKSIDNVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKYR 141 + 7899******************************************95......9******************************************************************************************7 PP >> HBA_COLLI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 184.4 0.2 2e-57 2e-57 1 142 [] 5 140 .. 5 140 .. 0.99 + 1 ! 194.1 0.2 2.5e-60 2.5e-60 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 184.4 bits; conditional E-value: 2e-57 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ++k++vk+v++k++++a ++G+eaLerlf++yP+tk+yF++Fd + +gsa++k+hgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a +fp+ +tpev+a+ldk++ +v ++l+akY - HBA_COLLI 5 NDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLS------HGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 - 599****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 194.1 bits; conditional E-value: 2.5e-60 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 2 vlsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + vls+++k++vk+v++k++++a ++G+eaLerlf++yP+tk+yF++Fd + +gsa++k+hgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a +fp+ +tpev+a+ldk++ +v ++l+akY+ + HBA_COLLI 1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLS------HGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141 + 69*********************************************96......9******************************************************************************************7 PP >> HBAD_PASMO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 183.5 0.1 3.9e-57 3.9e-57 1 142 [] 5 140 .. 5 140 .. 0.99 + 1 ! 191.4 0.1 1.7e-59 1.7e-59 3 148 .. 2 141 .] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 183.5 bits; conditional E-value: 3.9e-57 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+k+l++++wgk+++ ++eiGa+aL r+f++yP+tk+yF++Fd + +gs+++++hgkkv++al++a+k+ld+l++al++Ls+lHa++l+vdp+nfk+ls++l v la++++ke++pev++a+dk++++va++la+kY - HBAD_PASMO 5 EDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHFDLS------QGSDQIRGHGKKVVAALSNAIKNLDNLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKY 140 - 59*****************************************96......9*****************************************************************************************9 PP + == domain 1 score: 191.4 bits; conditional E-value: 1.7e-59 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + l++e+k+l++++wgk+++ ++eiG++aL r+f++yP+tk+yF++Fd + +gs+++++hgkkv++al++a+k+ld+l++al++Ls+lHa++l+vdp+nfk+ls++l v la++++ke++pev++a+dk++++va++la+kY+ + HBAD_PASMO 2 LTAEDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHFDLS------QGSDQIRGHGKKVVAALSNAIKNLDNLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKYR 141 + 789*******************************************96......9******************************************************************************************7 PP >> HBBL_RANCA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 180.0 0.1 4.7e-56 4.7e-56 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 185.0 0.2 1.6e-57 1.6e-57 4 147 .. 4 145 .. 2 146 .] 0.98 Alignments for each domain: - == domain 1 score: 180.0 bits; conditional E-value: 4.7e-56 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek++++svw+kv+++++ G+eaL+rlf+vyP+t++yF++F+dl+s+a+++g++kv+ahgkk+l a+++a+++ldd+kg+l++Lse Ha++l+vdpenf+ l+evl+vvl ak++k+f+p+vq++++k+++++ al++ Y - HBBL_RANCA 6 EEKAVINSVWQKVDVEQD--GHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSY 145 - 599**********99988..89********************************************************************************************************************9998 PP + == domain 1 score: 185.0 bits; conditional E-value: 1.6e-57 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ++eek++++svw+kv+++++ G+eaL+rlf+vyP+t++yF++F+dl+s+a+++g++kv+ahgkk+l a+++a+++ldd+kg+l++Lse Ha++l+vdpenf+ l+evl+vvl ak++k+f+p+vq++++k+++++ al++ Y + HBBL_RANCA 4 TAEEKAVINSVWQKVDVEQD--GHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSY 145 + 579************99988..89**********************************************************************************************************************99 PP >> HBB2_XENTR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 176.4 0.4 6.2e-55 6.2e-55 1 142 [] 6 145 .. 6 145 .. 0.98 + 1 ! 180.6 0.7 3.5e-56 3.5e-56 4 147 .. 4 145 .. 2 146 .] 0.98 Alignments for each domain: - == domain 1 score: 176.4 bits; conditional E-value: 6.2e-55 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - eek+++ svwgkv+ +++ G++aL+rl+vvyP+t++yF++F++l++ ++v+g+ kvkahg+kvl+a+g+a+++ldd+k++lk Ls++Ha++l+vdpenfk l++vlv+vlaak++++ftp+vqa+++kl +++ al++ Y - HBB2_XENTR 6 EEKATIASVWGKVDIEQD--GHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 - 599**********99888..89***************************************************************************************************************999999877 PP + == domain 1 score: 180.6 bits; conditional E-value: 3.5e-56 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 4 sdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + ++eek+++ svwgkv+ +++ G++aL+rl+vvyP+t++yF++F++l++ ++v+g+ kvkahg+kvl+a+g+a+++ldd+k++lk Ls++Ha++l+vdpenfk l++vlv+vlaak++++ftp+vqa+++kl +++ al++ Y + HBB2_XENTR 4 TAEEKATIASVWGKVDIEQD--GHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 + 579************99988..89********************************************************************************************************************9998 PP + +>> MYG_MUSAN + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 177.5 0.4 3.2e-55 3.2e-55 7 154 .] 2 148 .] 1 148 [] 0.99 + + Alignments for each domain: + == domain 1 score: 177.5 bits; conditional E-value: 3.2e-55 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 7 ekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + ++++v+svw+ ve+d ++iGq++L rlf++yPe++++F+kF++ ks e+k++a++ka++++vl+alg++vkk++++++ +k+L+++H+t++k++p++f++++++ v vl++++p+e++++vqaa++ ++++++++++++Yk+++fqg + MYG_MUSAN 2 DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKN-KSLGELKDTADIKAQADTVLSALGNIVKKKGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEYKAANFQG 148 + 8*****************************************9.79*****************************************************************************************************8 PP >> HBA4_SALIR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 167.7 0.1 3e-52 3e-52 2 142 .] 6 141 .. 5 141 .. 0.98 + 1 ! 176.2 0.1 8.3e-55 8.3e-55 3 148 .. 2 142 .] 1 142 [] 0.98 Alignments for each domain: - == domain 1 score: 167.7 bits; conditional E-value: 3e-52 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - +k++vk++wgk+ +++eiG++aL+r++vvyP+tk yF+++ + gsa vk+hg +++++++++v ++ddl g l+kLselHatkl+vdp+nfk+l++ l+vv+aa fp+eftpe++ ++dk+l+++a ala+kY - HBA4_SALIR 6 DKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASV-----APGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKY 141 - 89************************************999986.....69*****************************************************************************************9 PP - ->> MYG_MUSAN - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 164.2 0.3 3.5e-51 3.5e-51 2 142 .] 2 141 .. 1 141 [. 0.99 - - Alignments for each domain: - == domain 1 score: 164.2 bits; conditional E-value: 3.5e-51 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 2 ekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - ++++v+svw+ ve+d ++iG+++L rlf++yPe++++F+kF++ ks e+k++a++ka++++vl+alg++vkk++++++ +k+L+++H+t++k++p++f++++++ v vl++++p+e++++vqaa++ ++++++++++++Y - MYG_MUSAN 2 DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKN-KSLGELKDTADIKAQADTVLSALGNIVKKKGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEY 141 - 8*****************************************9.799********************************************************************************************99 PP + == domain 1 score: 176.2 bits; conditional E-value: 8.3e-55 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakYk 148 + ls+++k++vk++wgk+ +++eiG++aL+r++vvyP+tk yF+++ + gsa vk+hg +++++++++v ++ddl g l+kLselHatkl+vdp+nfk+l++ l+vv+aa fp+eftpe++ ++dk+l+++a ala+kY+ + HBA4_SALIR 2 LSAKDKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASV-----APGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKYR 142 + 899***************************************999986.....69******************************************************************************************7 PP >> HBB2_TRICR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 118.2 0.0 5.4e-37 5.4e-37 1 142 [] 6 145 .] 6 145 .] 0.97 + 1 ! 123.1 0.0 1.8e-38 1.8e-38 3 147 .. 3 145 .] 1 145 [] 0.97 Alignments for each domain: - == domain 1 score: 118.2 bits; conditional E-value: 5.4e-37 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i1 1 eekqlvksvwgkveadaaeiGaeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 142 - e+++ + ++ gkv++d+ +G++ L+rl+vv P++++yF F+dl+s +++ ++kv ahg kv+ ++ ea k+ld+l++ ++Ls +H k+ vdpenfkl s +++v la + +f+ + q a++kl++ v++al + Y - HBB2_TRICR 6 EDRKEIAAILGKVNVDS--LGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 - 58999********9875..59*********************************************************************************************************************9877 PP + == domain 1 score: 123.1 bits; conditional E-value: 1.8e-38 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i1 3 lsdeekqlvksvwgkveadaaeiGqeaLerlfvvyPetkeyFdkFddlkseaevkgsakvkahgkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvlaakfpkeftpevqaaldkllelvanalaakY 147 + l++e+++ + ++ gkv++d+ +G++ L+rl+vv P++++yF F+dl+s +++ ++kv ahg kv+ ++ ea k+ld+l++ ++Ls +H k+ vdpenfkl s +++v la + +f+ + q a++kl++ v++al + Y + HBB2_TRICR 3 LTAEDRKEIAAILGKVNVDS--LGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 + 7899************9875..59*********************************************************************************************************************9988 PP Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (142 nodes) -Target sequences: 45 (6519 residues searched) +Query model(s): 1 (154 nodes) +Target sequences: 45 (6519 residues searched) Passed MSV filter: 45 (1); expected 0.9 (0.02) Passed bias filter: 45 (1); expected 0.9 (0.02) Passed Vit filter: 45 (1); expected 0.0 (0.001) Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.34u 0.02s 00:00:00.36 Elapsed: 00:00:00.89 -# Mc/sec: 1.04 +# CPU time: 0.19u 0.00s 00:00:00.19 Elapsed: 00:00:00.20 +# Mc/sec: 5.00 @@ New targets included: 1 @@ New alignment includes: 46 subseqs (was 45), including original query @@ -1281,660 +1280,660 @@ @@ @@ Round: 3 @@ Included in MSA: 46 subsequences (query + 45 subseqs from 45 targets) -@@ Model size: 142 positions +@@ Model size: 154 positions @@ Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- - 7.7e-69 221.6 0.1 8.6e-69 221.5 0.1 1.0 1 HBB_MANSP - 4.1e-68 219.3 0.2 4.5e-68 219.1 0.2 1.0 1 HBB_URSMA - 5.6e-67 215.6 0.5 6.3e-67 215.4 0.5 1.0 1 HBB_RABIT - 1.5e-66 214.2 0.1 1.7e-66 214.0 0.1 1.0 1 HBB_CALAR - 5e-66 212.5 0.3 5.6e-66 212.4 0.3 1.0 1 HBB_TACAC - 5.2e-66 212.5 0.0 5.7e-66 212.3 0.0 1.0 1 HBB_COLLI - 6.6e-66 212.1 0.2 7.4e-66 212.0 0.2 1.0 1 HBE_PONPY - 7.2e-66 212.0 0.1 8e-66 211.9 0.1 1.0 1 HBB_SUNMU - 1e-65 211.5 0.0 1.2e-65 211.3 0.0 1.0 1 HBB_ORNAN - 1.5e-65 211.0 0.4 1.7e-65 210.8 0.4 1.0 1 HBB_SPETO - 1.6e-65 210.9 0.2 1.8e-65 210.7 0.2 1.0 1 HBB_EQUHE - 2.3e-65 210.4 0.9 2.5e-65 210.2 0.9 1.0 1 HBB_SPECI - 3e-65 210.0 0.0 3.4e-65 209.8 0.0 1.0 1 HBB_LARRI - 8e-65 208.6 0.1 8.9e-65 208.5 0.1 1.0 1 HBB_TRIIN - 1.2e-62 201.6 0.0 1.3e-62 201.5 0.0 1.0 1 HBB_TUPGL - 1.5e-61 198.0 0.6 1.7e-61 197.8 0.6 1.0 1 HBA_MESAU - 3e-61 197.0 0.1 3.4e-61 196.9 0.1 1.0 1 HBB1_VAREX - 6e-61 196.1 1.1 6.6e-61 195.9 1.1 1.0 1 HBA_MACFA - 9.7e-61 195.4 1.0 1.1e-60 195.2 1.0 1.0 1 HBA_MACSI - 3.2e-60 193.7 0.9 3.6e-60 193.6 0.9 1.0 1 HBA2_BOSMU - 3.2e-60 193.7 2.0 3.6e-60 193.5 2.0 1.0 1 HBA_PONPY - 4.2e-60 193.3 1.5 4.7e-60 193.2 1.5 1.0 1 HBA2_GALCR - 5.7e-60 192.9 0.5 6.3e-60 192.7 0.5 1.0 1 HBA_AILME - 9.6e-60 192.2 0.6 1.1e-59 192.0 0.6 1.0 1 HBA_FRAPO - 1e-59 192.1 0.9 1.1e-59 191.9 0.9 1.0 1 HBA_ANSSE - 2.2e-59 191.0 0.6 2.4e-59 190.9 0.6 1.0 1 HBA_PHACO - 2.4e-59 190.9 0.2 2.6e-59 190.7 0.2 1.0 1 HBA_PROLO - 4e-59 190.1 0.3 4.5e-59 190.0 0.3 1.0 1 HBA_ERIEU - 4.2e-59 190.1 0.9 4.7e-59 189.9 0.9 1.0 1 HBA_PAGLA - 1.6e-58 188.2 0.6 1.8e-58 188.0 0.6 1.0 1 HBA_TRIOC - 3.9e-58 186.9 0.9 4.3e-58 186.8 0.9 1.0 1 HBAD_CHLME - 3.5e-57 183.8 0.4 3.9e-57 183.7 0.4 1.0 1 HBA_COLLI - 5.8e-57 183.1 0.2 6.5e-57 183.0 0.2 1.0 1 HBBL_RANCA - 6.3e-56 179.8 0.1 7e-56 179.6 0.1 1.0 1 HBAD_PASMO - 9.4e-56 179.2 0.1 1e-55 179.1 0.1 1.0 1 HBAZ_HORSE - 4e-55 177.2 0.7 4.4e-55 177.0 0.7 1.0 1 HBB2_XENTR - 9.5e-55 176.0 1.6 1.1e-54 175.8 1.6 1.0 1 MYG_PROGU - 2.6e-54 174.6 5.3 2.9e-54 174.4 5.3 1.0 1 MYG_LYCPI - 1.1e-53 172.5 1.6 1.2e-53 172.4 1.6 1.0 1 MYG_MOUSE - 1.2e-53 172.4 4.3 1.4e-53 172.2 4.3 1.0 1 MYG_SAISC - 1.5e-53 172.1 4.2 1.7e-53 171.9 4.2 1.0 1 MYG_HORSE - 5e-53 170.4 5.7 5.6e-53 170.2 5.7 1.0 1 MYG_ESCGI - 3.8e-52 167.5 0.1 4.2e-52 167.4 0.1 1.0 1 HBA4_SALIR - 5.2e-50 160.6 0.0 5.8e-50 160.5 0.0 1.0 1 HBB2_TRICR - 2.1e-45 145.7 0.4 2.3e-45 145.5 0.4 1.0 1 MYG_MUSAN + 1.5e-69 224.0 0.1 1.7e-69 223.9 0.1 1.0 1 HBB_MANSP + 4.6e-69 222.5 0.2 5e-69 222.3 0.2 1.0 1 HBB_URSMA + 2.5e-68 220.1 0.6 2.7e-68 220.0 0.6 1.0 1 HBB_RABIT + 7.6e-68 218.5 0.0 8.3e-68 218.4 0.0 1.0 1 HBB_SUNMU + 9.5e-68 218.2 0.0 1.1e-67 217.9 0.0 1.0 1 HBB_COLLI + 1.4e-67 217.6 0.1 1.6e-67 217.5 0.1 1.0 1 HBB_EQUHE + 1.5e-67 217.6 0.3 1.6e-67 217.4 0.3 1.0 1 HBB_TACAC + 3.3e-67 216.5 0.7 3.6e-67 216.3 0.7 1.0 1 HBB_SPECI + 3.4e-67 216.4 0.1 3.8e-67 216.3 0.1 1.0 1 HBB_CALAR + 3.7e-67 216.3 0.4 4.1e-67 216.1 0.4 1.0 1 HBB_SPETO + 6.6e-67 215.5 0.0 7.2e-67 215.3 0.0 1.0 1 HBB_ORNAN + 8.4e-67 215.1 0.3 9.2e-67 215.0 0.3 1.0 1 HBE_PONPY + 2.3e-66 213.7 1.7 2.6e-66 213.5 1.7 1.0 1 MYG_ESCGI + 2.9e-66 213.4 0.1 3.2e-66 213.2 0.1 1.0 1 HBB_TRIIN + 5.3e-66 212.5 0.0 6.4e-66 212.3 0.0 1.0 1 HBB_LARRI + 8.7e-66 211.8 1.6 9.6e-66 211.7 1.6 1.0 1 MYG_LYCPI + 1.8e-65 210.8 0.2 2e-65 210.6 0.2 1.0 1 MYG_PROGU + 2.5e-65 210.3 0.9 2.8e-65 210.2 0.9 1.0 1 MYG_SAISC + 2.6e-65 210.3 0.8 2.9e-65 210.1 0.8 1.0 1 MYG_HORSE + 9.1e-65 208.5 0.2 1e-64 208.4 0.2 1.0 1 HBA_MESAU + 1.3e-64 208.0 0.3 1.4e-64 207.9 0.3 1.0 1 MYG_MOUSE + 1.5e-64 207.8 0.0 1.7e-64 207.6 0.0 1.0 1 HBB_TUPGL + 1.3e-63 204.7 0.5 1.5e-63 204.6 0.5 1.0 1 HBA_PONPY + 2.9e-63 203.6 0.2 3.2e-63 203.5 0.2 1.0 1 HBA_MACFA + 4e-63 203.2 0.2 4.4e-63 203.0 0.2 1.0 1 HBA_MACSI + 5e-63 202.9 0.1 5.9e-63 202.6 0.1 1.0 1 HBB1_VAREX + 5.7e-63 202.7 0.1 6.4e-63 202.5 0.1 1.0 1 HBA_AILME + 8.6e-63 202.1 0.3 9.6e-63 201.9 0.3 1.0 1 HBA2_BOSMU + 1.8e-62 201.0 0.3 2e-62 200.9 0.3 1.0 1 HBA_FRAPO + 1.9e-62 201.0 0.4 2.1e-62 200.8 0.4 1.0 1 HBA2_GALCR + 2.1e-62 200.8 0.3 2.4e-62 200.7 0.3 1.0 1 HBA_PHACO + 4e-62 199.9 0.3 4.4e-62 199.8 0.3 1.0 1 HBA_ANSSE + 4e-62 199.9 0.1 4.5e-62 199.8 0.1 1.0 1 HBA_ERIEU + 8.3e-62 198.9 0.3 9.2e-62 198.8 0.3 1.0 1 HBA_PAGLA + 9.5e-62 198.7 0.0 1.1e-61 198.6 0.0 1.0 1 HBA_PROLO + 2.2e-61 197.5 0.4 2.4e-61 197.4 0.4 1.0 1 HBA_TRIOC + 1.2e-60 195.1 0.5 1.3e-60 195.0 0.5 1.0 1 HBAD_CHLME + 4.1e-60 193.4 0.1 4.5e-60 193.3 0.1 1.0 1 HBAZ_HORSE + 6e-60 192.9 0.2 6.7e-60 192.7 0.2 1.0 1 HBA_COLLI + 1.7e-59 191.4 0.2 2e-59 191.2 0.2 1.0 1 HBBL_RANCA + 2.2e-59 191.0 0.1 2.4e-59 190.9 0.1 1.0 1 HBAD_PASMO + 1.1e-58 188.8 0.6 1.3e-58 188.6 0.6 1.0 1 HBB2_XENTR + 5.3e-56 180.0 0.1 5.9e-56 179.9 0.1 1.0 1 HBA4_SALIR + 2.5e-54 174.6 0.4 2.8e-54 174.5 0.4 1.0 1 MYG_MUSAN + 2e-52 168.4 0.0 2.2e-52 168.3 0.0 1.0 1 HBB2_TRICR Domain annotation for each sequence (and alignments): >> HBB_MANSP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 221.5 0.1 8.6e-69 8.6e-69 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 223.9 0.1 1.7e-69 1.7e-69 3 147 .. 3 145 .. 1 146 [] 0.99 Alignments for each domain: - == domain 1 score: 221.5 bits; conditional E-value: 8.6e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek++v+++wgkv+vd e+G+eaLgrll+vyP+t+r+Fd+f++l+s+dav+g++kvkahgkkvl+a++++++hld+lk+++a+LselH++klhvdpenfkll++vl++vla+h++keftp+vqaA++k++a+vanaLa+kY - HBB_MANSP 6 EEKTAVTTLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 69*************8..89*************************************************************************************************************************9 PP + == domain 1 score: 223.9 bits; conditional E-value: 1.7e-69 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+ eek++v+++wgkv+vd e+G+eaL rllvvyP+t+r+Fd+F+dl+s+d+v+g++kvkahGkkvl a+++ +++ld+lkg++++LselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++++vanala+kY + HBB_MANSP 3 LTPEEKTAVTTLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 89***************97..8*************************************************************************************************************************** PP >> HBB_URSMA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 219.1 0.2 4.5e-68 4.5e-68 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 222.3 0.2 5e-69 5e-69 3 147 .. 3 145 .. 1 146 [] 0.99 Alignments for each domain: - == domain 1 score: 219.1 bits; conditional E-value: 4.5e-68 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eeks v+ +wgkv+vd e+G+eaLgrll+vyP+t+r+Fd+f++l+s+da+++++kvkahgkkvl+++++++k+ld+lk+++a+LselH++klhvdpenfkll++vl++vla+h++keftp+vqaA++k++a+vanaLa+kY - HBB_URSMA 6 EEKSLVTGLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 69*************8..89*************************************************************************************************************************9 PP + == domain 1 score: 222.3 bits; conditional E-value: 5e-69 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+ eek+lv+ +wgkv+vd e+G+eaL rllvvyP+t+r+Fd+F+dl+s+d++++++kvkahGkkvl+++++ +k+ld+lkg+++kLselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++++vanala+kY + HBB_URSMA 3 LTGEEKSLVTGLWGKVNVD--EVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 899**************97..8*************************************************************************************************************************** PP >> HBB_RABIT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 215.4 0.5 6.3e-67 6.3e-67 1 142 [] 6 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 215.4 bits; conditional E-value: 6.3e-67 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eeks+v+a+wgkv+v+ e+G+eaLgrll+vyP+t+r+F++f++l+s++av++++kvkahgkkvl+a++e++ hld+lk+++a+LselH++klhvdpenf+ll++vl++vl++h++keftp+vqaA++k++a+vanaLa+kY - HBB_RABIT 6 EEKSAVTALWGKVNVE--EVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 69*************6..89*************************************************************************************************************************9 PP - ->> HBB_CALAR - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 214.0 0.1 1.7e-66 1.7e-66 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 220.0 0.6 2.7e-68 2.7e-68 3 147 .. 3 145 .. 1 146 [] 0.99 Alignments for each domain: - == domain 1 score: 214.0 bits; conditional E-value: 1.7e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eeks+v+a+wgkv+vd e+G+eaLgrll+vyP+t+r+F++f++l+++dav++++kvkahgkkvl+a+++++ hld+lk+++a+LselH++klhvdpenf+ll++vl++vla+h++keftp vqaA++k++a+vanaLa+kY - HBB_CALAR 6 EEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKY 145 - 69*************8..89*************************************************************************************************************************9 PP - ->> HBB_TACAC + == domain 1 score: 220.0 bits; conditional E-value: 2.7e-68 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls+eek++v+a+wgkv+v+ e+G+eaL rllvvyP+t+r+F++F+dl+s+++v++++kvkahGkkvl+a++e +++ld+lkg+++kLselH++kl+vdpenf+ll++vlv+vL+++f+keftp+vqaa++k++++vanala+kY + HBB_RABIT 3 LSSEEKSAVTALWGKVNVE--EVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 + 9****************96..8*************************************************************************************************************************** PP + +>> HBB_SUNMU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 212.4 0.3 5.6e-66 5.6e-66 2 142 .] 7 145 .. 6 145 .. 0.99 + 1 ! 218.4 0.0 8.3e-68 8.3e-68 3 147 .. 3 145 .. 1 146 [] 0.99 Alignments for each domain: - == domain 1 score: 212.4 bits; conditional E-value: 5.6e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - ek++v+++wg+v+v+ e+G+eaLgrll+vyP+t+r+F++f++l+s+dav+g++kvkahg+kvlt++g+a+k+ld+lk+++a+LselH++klhvdpenf+ l++vl+vvla+h++keftpe+qaA++k++++v++aLa+kY - HBB_TACAC 7 EKTAVTNLWGHVNVN--ELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKY 145 - 89************7..9**************************************************************************************************************************9 PP + == domain 1 score: 218.4 bits; conditional E-value: 8.3e-68 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls eek+ v+ +wgkv+ d e+GaeaL rllvvyP+t+r+Fd+F+dl+s+++v+g++kvkahGkkvl++lge v +ld+lkg+++kLselH++kl+vdpenf+ll++vlvvvLa+kf+keftp vqaa++k++++vanala+kY + HBB_SUNMU 3 LSGEEKACVTGLWGKVNED--EVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKY 145 + 99***************97..8*************************************************************************************************************************** PP >> HBB_COLLI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 212.3 0.0 5.7e-66 5.7e-66 1 142 [] 6 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 212.3 bits; conditional E-value: 5.7e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ ++++wgkv+v+ ++GaeaL+rll+vyP+t+r+F++f++l+s++a++g+++vkahgkkvlt++g+avk+ld++k+++a+LselH++klhvdpenf+ll+++l+++la+h++k+ftpe qaA++k++++va+aLarkY - HBB_COLLI 6 EEKQLITSIWGKVNVA--DCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKY 145 - 69*************7..8**************************************************************************************************************************9 PP - ->> HBE_PONPY - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 212.0 0.2 7.4e-66 7.4e-66 1 142 [] 6 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 212.0 bits; conditional E-value: 7.4e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek++v+++w+k++v+ eaG+eaLgrll+vyP+t+r+Fd+f++l+s++a+ g++kvkahgkkvlt++g+a+k++d+lk ++a+LselH++klhvdpenfkll++v++++la+h++keftpevqaA++k+++ava aLa+kY - HBE_PONPY 6 EEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKY 145 - 69*************6..89*************************************************************************************************************************9 PP - ->> HBB_SUNMU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 211.9 0.1 8e-66 8e-66 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 217.9 0.0 1.1e-67 1.1e-67 4 147 .. 4 145 .. 2 146 .] 0.99 Alignments for each domain: - == domain 1 score: 211.9 bits; conditional E-value: 8e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ v+ +wgkv+ d e+GaeaLgrll+vyP+t+r+Fd+f++l+s++av+g++kvkahgkkvl++lge+v +ld+lk+++a+LselH++klhvdpenf+ll++vl+vvla++++keftp vqaA++k++a+vanaLa+kY - HBB_SUNMU 6 EEKACVTGLWGKVNED--EVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKY 145 - 699***********97..89*************************************************************************************************************************9 PP - ->> HBB_ORNAN - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 211.3 0.0 1.2e-65 1.2e-65 2 142 .] 7 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 211.3 bits; conditional E-value: 1.2e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eks+v+++wgkv+++ e+G+eaLgrll+vyP+t+r+F+ f++l+s+ av+g++kvkahg+kvlt++g+a+k+lddlk+++a+LselH++klhvdpenf+ l++vlivvla+h++k+f+pevqaA++k++++va+aL +kY - HBB_ORNAN 7 EKSAVTNLWGKVNIN--ELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKY 145 - 89***********96..9**************************************************************************************************************************9 PP - ->> HBB_SPETO - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 210.8 0.4 1.7e-65 1.7e-65 2 142 .] 7 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 210.8 bits; conditional E-value: 1.7e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - ek++++++wgkv+++ e+GaeaLgrll+vyP+t+r+Fd+f++l+s++av+g++kvkahgkkv++++++++khld+lk+++a LselH++klhvdpenfkll++++++v+a+hl+k+ftpe+qaA++k++a+vanaL++kY - HBB_SPETO 7 EKNAISTAWGKVNAA--EIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKY 145 - 899**********96..9**************************************************************************************************************************9 PP + == domain 1 score: 217.9 bits; conditional E-value: 1.1e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + saeekql++++wgkv+v +++GaeaL+rll+vyP+t+r+F++F++l+s+++++g+++vkahGkkvlt++g+avk+ld++kg++++LselH++kl+vdpenf+ll+++lv++Laa+f+k+ftpe+qaa++kl+++va+ala+kY + HBB_COLLI 4 SAEEKQLITSIWGKVNV--ADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKY 145 + 89**************9..58*************************************************************************************************************************** PP >> HBB_EQUHE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 210.7 0.2 1.8e-65 1.8e-65 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 217.5 0.1 1.6e-67 1.6e-67 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 210.7 bits; conditional E-value: 1.8e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek++v a+w+kv+ + e+G+eaLgrll+vyP+t+r+Fd+f++l++++av+g++kvkahgkkvl+++ge+v+hld+lk+++a+LselH++klhvdpenf+ll++vl+vvla+h++k+ftpe qa+++k++a+vanaLa+kY - HBB_EQUHE 6 EEKAAVLALWDKVNEE--EVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKY 145 - 69***********985..99*************************************************************************************************************************9 PP + == domain 1 score: 217.5 bits; conditional E-value: 1.6e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls eek++v a+w+kv+ + e+G+eaL rllvvyP+t+r+Fd+F+dl+++++v+g++kvkahGkkvl+++ge v++ld+lkg++++LselH++kl+vdpenf+ll++vlvvvLa++f+k+ftpe qa+++k++++vanala+kY + HBB_EQUHE 3 LSGEEKAAVLALWDKVNEE--EVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKY 145 + 99**************985..9*************************************************************************************************************************** PP + +>> HBB_TACAC + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 217.4 0.3 1.6e-67 1.6e-67 3 147 .. 3 145 .. 1 146 [] 0.99 + + Alignments for each domain: + == domain 1 score: 217.4 bits; conditional E-value: 1.6e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls +ek++v+++wg+v+v+ elG+eaL rllvvyP+t+r+F++F+dl+s+d+v+g+akvkahG+kvlt++g+a+k+ld+lkg+++kLselH++kl+vdpenf+ l++vlvvvLa++f+keftpe+qaa++kl+++v++ala+kY + HBB_TACAC 3 LSGSEKTAVTNLWGHVNVN--ELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKY 145 + 899**************96..8*************************************************************************************************************************** PP >> HBB_SPECI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 210.2 0.9 2.5e-65 2.5e-65 2 142 .] 7 145 .. 6 145 .. 0.99 + 1 ! 216.3 0.7 3.6e-67 3.6e-67 3 147 .. 3 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 216.3 bits; conditional E-value: 3.6e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls++ek++++++wgkv++ +e+GaeaL rllvvyP+t+r+Fd+F+dl+s+++v+g+akvkahGkkv++++++ +k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++++vanala+kY + HBB_SPECI 3 LSDGEKNAISTAWGKVHA--AEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKY 145 + 9***************76..69*************************************************************************************************************************** PP + +>> HBB_CALAR + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 216.3 0.1 3.8e-67 3.8e-67 3 147 .. 3 145 .. 1 146 [] 0.99 + + Alignments for each domain: + == domain 1 score: 216.3 bits; conditional E-value: 3.8e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+ eek++v+a+wgkv+vd e+G+eaL rllvvyP+t+r+F++F+dl+++d+v++++kvkahGkkvl a+++ +++ld+lkg++++LselH++kl+vdpenf+ll++vlv+vLa++f+keftp vqaa++k++++vanala+kY + HBB_CALAR 3 LTGEEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKY 145 + 899**************97..8*************************************************************************************************************************** PP + +>> HBB_SPETO + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 216.1 0.4 4.1e-67 4.1e-67 3 147 .. 3 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 216.1 bits; conditional E-value: 4.1e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+++ek++++++wgkv++ +e+GaeaL rllvvyP+t+r+Fd+F+dl+s+++v+g+akvkahGkkv++++++ +k+ld+lkg++++LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++++vanal++kY + HBB_SPETO 3 LTDGEKNAISTAWGKVNA--AEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKY 145 + 99**************98..59*************************************************************************************************************************** PP + +>> HBB_ORNAN + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 215.3 0.0 7.2e-67 7.2e-67 3 147 .. 3 145 .. 1 146 [] 0.99 Alignments for each domain: - == domain 1 score: 210.2 bits; conditional E-value: 2.5e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - ek++++++wgkv ++ e+GaeaLgrll+vyP+t+r+Fd+f++l+s++av+g++kvkahgkkv++++++++khld+lk+++a LselH++klhvdpenfkll++++++v+a+hl+k+ftpe+qaA++k++a+vanaLa+kY - HBB_SPECI 7 EKNAISTAWGKVHAA--EVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKY 145 - 899*********875..99*************************************************************************************************************************9 PP + == domain 1 score: 215.3 bits; conditional E-value: 7.2e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls +ek++v+++wgkv+++ elG+eaL rllvvyP+t+r+F+ F+dl+s+ +v+g++kvkahG+kvlt++g+a+k+lddlkg+++kLselH++kl+vdpenf+ l++vl+vvLa++f+k+f+pevqaa++kl+++va+al +kY + HBB_ORNAN 3 LSGGEKSAVTNLWGKVNIN--ELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKY 145 + 899**************96..8*************************************************************************************************************************** PP + +>> HBE_PONPY + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 215.0 0.3 9.2e-67 9.2e-67 4 147 .. 4 145 .. 1 146 [] 0.98 + + Alignments for each domain: + == domain 1 score: 215.0 bits; conditional E-value: 9.2e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + +aeek++v+++w+k++v+ e G+eaL rllvvyP+t+r+Fd+F++l+s++++ g++kvkahGkkvlt++g+a+k++d+lk++++kLselH++kl+vdpenfkll++v+v++La++f+keftpevqaa++kl+++va ala+kY + HBE_PONPY 4 TAEEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKY 145 + 89**************97..78************************************************************************************************************************** PP + +>> MYG_ESCGI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 213.5 1.7 2.6e-66 2.6e-66 2 154 .] 1 153 [] 1 153 [] 1.00 + + Alignments for each domain: + == domain 1 score: 213.5 bits; conditional E-value: 2.6e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + vLs++e+qlv ++w+kve+d++++G+++L+rl++ +Pet ++FdkFk+lk+e+e+k+s+++k+hG++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vL++++p++f++++qaa++k+lel+++++aakYkelgfqg + MYG_ESCGI 1 VLSDAEWQLVLNIWAKVEADVAGHGQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKYKELGFQG 153 + 79******************************************************************************************************************************************************8 PP + +>> HBB_TRIIN + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 213.2 0.1 3.2e-66 3.2e-66 3 147 .. 3 145 .. 1 146 [] 0.99 + + Alignments for each domain: + == domain 1 score: 213.2 bits; conditional E-value: 3.2e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+ eek+lv +w+kv+v+ e+G+eaL rllvvyP+t+r+F++F+dl+s++++++++kvkahG+kv+t++g+ +k+l+dlkga+++LselH++kl+vdpenf+ll++vlv+vLa++f+kef+pe+qaa++k++++vanala+kY + HBB_TRIIN 3 LTPEEKALVIGLWAKVNVK--EYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKY 145 + 89***************96..8*************************************************************************************************************************** PP >> HBB_LARRI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 209.8 0.0 3.4e-65 3.4e-65 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 212.3 0.0 6.4e-66 6.4e-66 4 147 .. 4 145 .. 2 146 .] 0.99 Alignments for each domain: - == domain 1 score: 209.8 bits; conditional E-value: 3.4e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ ++ +wgkv+v+ ++GaeaL+rll+vyP+t+r+F +f++l+s++a++g+++v+ahgkkvlt++geavk+ld++k+++a+LselH++klhvdpenf+ll+++li+vla+h+ k+ftp+ qaA++k++++va+aLarkY - HBB_LARRI 6 EEKQLITGLWGKVNVA--DCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKY 145 - 69*************7..8**************************************************************************************************************************9 PP - ->> HBB_TRIIN + == domain 1 score: 212.3 bits; conditional E-value: 6.4e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + saeekql++ +wgkv+v +++GaeaL+rll+vyP+t+r+F +F++l+s+++++g++ v+ahGkkvlt++geavk+ld++k+++++LselH++kl+vdpenf+ll+++l++vLaa+f k+ftp+ qaa++kl+++va+ala+kY + HBB_LARRI 4 SAEEKQLITGLWGKVNV--ADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKY 145 + 89**************9..58*************************************************************************************************************************** PP + +>> MYG_LYCPI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 208.5 0.1 8.9e-65 8.9e-65 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 211.7 1.6 9.6e-66 9.6e-66 3 154 .] 2 153 .] 1 153 [] 1.00 + + Alignments for each domain: + == domain 1 score: 211.7 bits; conditional E-value: 9.6e-66 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + Ls++e+q v ++wgkve+d++++G+e+L+rl++++Pet ++FdkFk+lk+ede+kgs+++k+hG++vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vL++k++++f+++++aa++k+lel++n++aakYkelgfqg + MYG_LYCPI 2 LSDGEWQIVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP + +>> MYG_PROGU + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 210.6 0.2 2e-65 2e-65 3 154 .] 2 153 .] 1 153 [] 1.00 Alignments for each domain: - == domain 1 score: 208.5 bits; conditional E-value: 8.9e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ v +w kv+v+ e+G+eaLgrll+vyP+t+r+F++f++l+s++a+++++kvkahg+kv t++g+++khl+dlk+a+aeLselH++klhvdpenf+ll++vl++vla+h++kef+pe+qaA++k++a+vanaLa+kY - HBB_TRIIN 6 EEKALVIGLWAKVNVK--EYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKY 145 - 699************6..9**************************************************************************************************************************9 PP - ->> HBB_TUPGL + == domain 1 score: 210.6 bits; conditional E-value: 2e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + Ls++e+qlv +vwgkve+d++++G+e+L+rl++ +Pet ++FdkFk+lk+ede+++s+++k+hG++vltalg ++kk+++++++l++L+++Hatk+k+++++++++se++++vL++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_PROGU 2 LSDGEWQLVLNVWGKVEGDLSGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP + +>> MYG_SAISC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 201.5 0.0 1.3e-62 1.3e-62 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 210.2 0.9 2.8e-65 2.8e-65 3 154 .] 2 153 .] 1 153 [] 1.00 Alignments for each domain: - == domain 1 score: 201.5 bits; conditional E-value: 1.3e-62 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek++v+ +wgkv+ + ++G++ Lg ll+vyP+t+r+Fd+f++l+s++av+ ++kvkahgkkvlt+++++++hld+lk+++a+LselH++klhvdpenf+ll++vl+ vla++++ eftp+vqaA++k++a+vanaLa+kY - HBB_TUPGL 6 EEKAAVTGLWGKVDLE--KVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKY 145 - 69***********997..57*************************************************************************************************************************9 PP + == domain 1 score: 210.2 bits; conditional E-value: 2.8e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + Ls++e+qlv ++wgkve+d+ ++G+e+L+ l++ +Pet ++FdkFk+lksede+k+s+++k+hG++vltalg ++kk+++++++lk+L+++Hatk+k+++++++l+s+++v+vL++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_SAISC 2 LSDGEWQLVLNIWGKVEADIPSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP + +>> MYG_HORSE + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 210.1 0.8 2.9e-65 2.9e-65 3 154 .] 2 153 .] 1 153 [] 1.00 + + Alignments for each domain: + == domain 1 score: 210.1 bits; conditional E-value: 2.9e-65 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + Ls++e+q+v +vwgkve+d++++G+e+L+rl++ +Pet ++FdkFk+lk+e+e+k+s+++k+hG+ vltalg ++kk+++++++lk+L+++Hatk+k+++++++++s+++++vL++k+p++f++++q+a++k+lel++n++aakYkelgfqg + MYG_HORSE 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP >> HBA_MESAU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 197.8 0.6 1.7e-61 1.7e-61 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 208.4 0.2 1e-64 1e-64 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 208.4 bits; conditional E-value: 1e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++++++wgk++++a e+GaeaLer++ vyP+tk+yF++F+ + +gsa+vk+hGkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p++ftp+v+a+ldk++++v+++l++kY+ + HBA_MESAU 1 VLSAKDKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHFDVS------HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> MYG_MOUSE + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 207.9 0.3 1.4e-64 1.4e-64 3 154 .] 2 153 .] 1 153 [] 1.00 Alignments for each domain: - == domain 1 score: 197.8 bits; conditional E-value: 1.7e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++++++wgk+++++ e+GaeaL+r++ vyP+tk+yF++f+ + +gs++vk+hgkkv++al++av hlddl++al++Ls+lHa+kl+vdp+nfklls++l+v+la+h+p++ftp+v+a+ldkf+a+v+++L++kY - HBA_MESAU 6 DKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHFDVS------HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP - ->> HBB1_VAREX + == domain 1 score: 207.9 bits; conditional E-value: 1.4e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + Ls++e+qlv +vwgkve+d++++G+e+L+ l++++Pet ++FdkFk+lkse+++kgs+++k+hG +vltalg+++kk++++++++++L+++Hatk+k+++++++++se+++ vL+++++++f++++q+a++k+lel++n++aakYkelgfqg + MYG_MOUSE 2 LSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKYKELGFQG 153 + 89*****************************************************************************************************************************************************8 PP + +>> HBB_TUPGL # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.9 0.1 3.4e-61 3.4e-61 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 207.6 0.0 1.7e-64 1.7e-64 3 147 .. 3 145 .. 1 146 [] 0.98 Alignments for each domain: - == domain 1 score: 196.9 bits; conditional E-value: 3.4e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ + ++wgk++v +G+e+L+ ll++yP+t+r+F++f++l+s++a+ g+++vkahgkkvlt++g+a+k+ld++k+++a+LselH++klhvdp+nfkll++vl++vla h++keftp+++aA++k++++v++ Lar+Y - HBB1_VAREX 6 EEKQLICSLWGKIDVG--LIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRY 145 - 69************96..69************************************************************************************************************************99 PP + == domain 1 score: 207.6 bits; conditional E-value: 1.7e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + Ls eek++v+ +wgkv+ + ++G++ L ll+vyP+t+r+Fd+F+dl+s+++v++++kvkahGkkvlt++++ +++ld+lkg+++kLselH++kl+vdpenf+ll++vlv vLa++f+ eftp+vqaa++k++++vanala+kY + HBB_TUPGL 3 LSGEEKAAVTGLWGKVDLE--KVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKY 145 + 99**************885..8*************************************************************************************************************************** PP + +>> HBA_PONPY + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 204.6 0.5 1.5e-63 1.5e-63 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 204.6 bits; conditional E-value: 1.5e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k++vk++wgkv+++a ++GaeaLer++ ++P+tk+yF++F+ + +gsa+vk+hGkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_PONPY 1 VLSPADKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_MACFA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.9 1.1 6.6e-61 6.6e-61 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 203.5 0.2 3.2e-63 3.2e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 195.9 bits; conditional E-value: 6.6e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+a+wgkv++++ e+GaeaL+r++l++P+tk+yF++f+l+ +gs++vk+hgkkv++al++av h+dd+++al++Ls+lHa+kl+vdp+nfklls++l+v+la+hlp+eftp+v+a+ldkfla+v+++L++kY - HBA_MACFA 6 DKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP + == domain 1 score: 203.5 bits; conditional E-value: 3.2e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k++vka+wgkv+++a e+GaeaLer++ ++P+tk+yF++F+ + +gsa+vk+hGkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_MACFA 1 VLSPADKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_MACSI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.2 1.0 1.1e-60 1.1e-60 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 195.2 bits; conditional E-value: 1.1e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+ +wgkv++++ e+GaeaL+r++l++P+tk+yF++f+l+ +gs++vk+hgkkv++al++av h+dd+++al++Ls+lHa+kl+vdp+nfklls++l+v+la+hlp+eftp+v+a+ldkfla+v+++L++kY - HBA_MACSI 6 DKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP - ->> HBA2_BOSMU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.6 0.9 3.6e-60 3.6e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 203.0 0.2 4.4e-63 4.4e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.6 bits; conditional E-value: 3.6e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k +v+a+wgkv+++++e+GaeaL+r++l++P+tk+yF++f+l+ +gs++vk+hg+kv++al++av hlddl++al+eLs+lHa+kl+vdp+nfklls+ l+v+la+hlp++ftp+v+a+ldkfla+v+++L++kY - HBA2_BOSMU 6 DKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGAKVAAALTKAVGHLDDLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKY 140 - 899*****************************************......******************************************************************************************9 PP - ->> HBA_PONPY + == domain 1 score: 203.0 bits; conditional E-value: 4.4e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k++vk++wgkv+++a e+GaeaLer++ ++P+tk+yF++F+ + +gsa+vk+hGkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+l++v+++l++kY+ + HBA_MACSI 1 VLSPADKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> HBB1_VAREX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.5 2.0 3.6e-60 3.6e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 202.6 0.1 5.9e-63 5.9e-63 4 147 .. 4 145 .. 2 146 .] 0.98 Alignments for each domain: - == domain 1 score: 193.5 bits; conditional E-value: 3.6e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+++wgkv++++ ++GaeaL+r++l++P+tk+yF++f+l+ +gs++vk hgkkv++al++av h+dd+++al++Ls+lHa+kl+vdp+nfklls++l+v+la+hlp+eftp+v+a+ldkfla+v+++L++kY - HBA_PONPY 6 DKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP - ->> HBA2_GALCR - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.2 1.5 4.7e-60 4.7e-60 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 193.2 bits; conditional E-value: 4.7e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +ks+v+a+w+kv++++ ++GaeaL+r++l++P+tk+yF++f+l+ +gs +vk+hgkkv++al++av+h+dd+++al++Ls+lHa+kl+vdp+nfkll ++l+v+la+h+p+eftp+v+a+ldkf+a+v+++L++kY - HBA2_GALCR 6 DKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSTQVKGHGKKVADALTNAVLHVDDMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKY 140 - 8*******************************************......******************************************************************************************9 PP + == domain 1 score: 202.6 bits; conditional E-value: 5.9e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + +aeekql+ ++wgk++v +G+e+L+ llv yP+t+r+F++F++l+s+++++g+++vkahGkkvlt++g+a+k+ld++k++++kLselH++kl+vdp+nfkll++vlv+vLa +++keftp+++aa++kl+++v+++la++Y + HBB1_VAREX 4 TAEEKQLICSLWGKIDVG--LIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRY 145 + 79*************996..69************************************************************************************************************************** PP >> HBA_AILME # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 192.7 0.5 6.3e-60 6.3e-60 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 202.5 0.1 6.4e-63 6.4e-63 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 192.7 bits; conditional E-value: 6.3e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+a+w+k+++++ e+G+eaL+r + ++P+tk+yF++f+l+ +gs++vkahgkkv++al++av hlddl++al++Ls+lHa+kl+vdp+nfklls++l+v+la+h+p+eftp+v+a+ldkf++av+++L++kY - HBA_AILME 6 DKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP + == domain 1 score: 202.5 bits; conditional E-value: 6.4e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k++vka w+k++++a e+G+eaLer + ++P+tk+yF++F+ + gsa+vkahGkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA_AILME 1 VLSPADKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> HBA2_BOSMU + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 201.9 0.3 9.6e-63 9.6e-63 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 201.9 bits; conditional E-value: 9.6e-63 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k +vka+wgkv+++a+e+GaeaLer++ ++P+tk+yF++F+ + +gsa+vk+hG+kv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls+ l+v+La+++p++ftp+v+a+ldk+l+ v+++l++kY+ + HBA2_BOSMU 1 VLSAADKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHFDLS------HGSAQVKGHGAKVAAALTKAVGHLDDLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_FRAPO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 192.0 0.6 1.1e-59 1.1e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 200.9 0.3 2e-62 2e-62 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 200.9 bits; conditional E-value: 2e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++vk ++gk++++ae++GaeaLer++++yP+tk+yF++F+ + +gsa+vk+hGkkv++al ea +++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v n+l+akY+ + HBA_FRAPO 1 VLSAADKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHFDLS------HGSAQVKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> HBA2_GALCR + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 200.8 0.4 2.1e-62 2.1e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 192.0 bits; conditional E-value: 1.1e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+ ++gk+++++e++GaeaL+r++++yP tk+yF++f+l+ +gs++vk+hgkkv++al ea++h+dd++++l++Ls+lHa+kl+vdp+nfkll+++++vv+aih+p+++tpev+a+ldkfl+av n+L++kY - HBA_FRAPO 6 DKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHFDLS------HGSAQVKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKY 140 - 89******************************************......******************************************************************************************9 PP + == domain 1 score: 200.8 bits; conditional E-value: 2.1e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k++vka+w+kv+++a ++GaeaLer++ ++P+tk+yF++F+ + +gs++vk+hGkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfkll ++l+v+La+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA2_GALCR 1 VLSPTDKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHFDLS------HGSTQVKGHGKKVADALTNAVLHVDDMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> HBA_PHACO + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 200.7 0.3 2.4e-62 2.4e-62 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 200.7 bits; conditional E-value: 2.4e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++vk +++k+ ++aee+GaeaLer++++yP+tk+yF++F+ + +gsa++k+hGkkv++al eav+++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l++v ++l+akY+ + HBA_PHACO 1 VLSAADKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHFDLS------HGSAQIKGHGKKVVAALIEAVNHIDDITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_ANSSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.9 0.9 1.1e-59 1.1e-59 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 191.9 bits; conditional E-value: 1.1e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k +v++v+gk+++++ee+Gae+L+r++ ++P+tk+yF++f+l+ +gs+++kahgkkv++al+ea++h+dd+++al++Ls+lHa+kl+vdp+nfk+l+++++vvlaih+p+ +tpev+a++dkfl+ava++L++kY - HBA_ANSSE 6 DKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHFDLQ------PGSAQIKAHGKKVAAALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKY 140 - 899****************************************9......******************************************************************************************9 PP - ->> HBA_PHACO - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 190.9 0.6 2.4e-59 2.4e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 199.8 0.3 4.4e-62 4.4e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 190.9 bits; conditional E-value: 2.4e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+ +++k+ +++ee+GaeaL+r++++yP tk+yF++f+l+ +gs+++k+hgkkv++al eav+h+dd+ ++l++Ls+lHa+kl+vdp+nfkll+++++vv+aih+p+++tpev+a+ldkfl+av ++L++kY - HBA_PHACO 6 DKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHFDLS------HGSAQIKGHGKKVVAALIEAVNHIDDITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKY 140 - 89******************************************......******************************************************************************************9 PP - ->> HBA_PROLO - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 190.7 0.2 2.6e-59 2.6e-59 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 190.7 bits; conditional E-value: 2.6e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++++a+w+k+++++ e+G+eaL+r + ++P+tk+yF++f+l+ +gs++vkahgkkv++al++av hlddl++al++Ls+lHa+kl+vdp+nfklls++l+v+la+h+p+eftp+v+a+ldkf+ +v+++L++kY - HBA_PROLO 6 DKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTLAVGHLDDLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP + == domain 1 score: 199.8 bits; conditional E-value: 4.4e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k +vk+v+gk++++aee+Gae+L+r+++++P+tk+yF++F+ + gsa++kahGkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfk+l+++++vvLa ++p+ +tpev+a++dk+l++va++l+akY+ + HBA_ANSSE 1 VLSAADKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHFDLQ------PGSAQIKAHGKKVAAALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_ERIEU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 190.0 0.3 4.5e-59 4.5e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 199.8 0.1 4.5e-62 4.5e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 190.0 bits; conditional E-value: 4.5e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v++ wgk++++ e+G+eaL r++ +P+tk+yF++f+l+ +gs++vk+hgkkv++al++av++ldd+++al++Ls+lHa+kl+vdp+nfklls++l+v+la h+p++ftp+v+a+ldkfla+va++L++kY - HBA_ERIEU 6 DKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHFDLN------PGSAQVKGHGKKVADALTTAVNNLDDVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKY 140 - 89*****************************************9......******************************************************************************************9 PP + == domain 1 score: 199.8 bits; conditional E-value: 4.5e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++vk+ wgk++++ e+G+eaL r+++ +P+tk+yF++F+ gsa+vk+hGkkv++al++av++ldd+ gal++Ls+lHa+kl+vdp+nfklls++l+v+La ++p++ftp+v+a+ldk+l++va++l++kY+ + HBA_ERIEU 1 VLSATDKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHFDLN------PGSAQVKGHGKKVADALTTAVNNLDDVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_PAGLA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 189.9 0.9 4.7e-59 4.7e-59 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 198.8 0.3 9.2e-62 9.2e-62 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 189.9 bits; conditional E-value: 4.7e-59 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++++a+w+k+++++ e+GaeaL+r ++++P+tk+yF++f+l+ +gs++vkahgkkv++al++av hl+dl++al++Ls+lHa+kl+vdp+nfklls++l+v+la+h+p+eftp+v+ Aldkf++av+++L++kY - HBA_PAGLA 6 DKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHFDLS------HGSAQVKAHGKKVADALTLAVGHLEDLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKY 140 - 89******************************************......******************************************************************************************9 PP + == domain 1 score: 198.8 bits; conditional E-value: 9.2e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs+++k+++ka w+k++++a e+GaeaLer ++++P+tk+yF++F+ + +gsa+vkahGkkv++al+ av +l+dl +al++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v++aldk++++v+++l++kY+ + HBA_PAGLA 1 VLSSADKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHFDLS------HGSAQVKAHGKKVADALTLAVGHLEDLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP + +>> HBA_PROLO + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 198.6 0.0 1.1e-61 1.1e-61 2 148 .. 1 141 [] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 198.6 bits; conditional E-value: 1.1e-61 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLs ++k+++ka w+k++++a e+G+eaLer + ++P+tk+yF++F+ + gsa+vkahGkkv++al+ av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk++++v+++l++kY+ + HBA_PROLO 1 VLSPADKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHFDLS------PGSAQVKAHGKKVADALTLAVGHLDDLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBA_TRIOC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 188.0 0.6 1.8e-58 1.8e-58 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 197.4 0.4 2.4e-61 2.4e-61 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 188.0 bits; conditional E-value: 1.8e-58 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v++v++k+ +++e++Gae+L+r++++yP tk+yF++f+l+ +gs+++kahgkkv++al eav+h+dd+++al++Ls+lHa+kl+vdp+nfkll+++++vv+aih+p+ +tpev+a+ldkfl+av n+L++kY - HBA_TRIOC 6 DKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHFDLH------HGSAQIKAHGKKVVGALIEAVNHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKY 140 - 9*******************************************......******************************************************************************************9 PP + == domain 1 score: 197.4 bits; conditional E-value: 2.4e-61 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++vk+v++k++++ae++Gae+Ler++++yP tk+yF++F+ + +gsa++kahGkkv+ al eav+++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+ +tpev+a+ldk+l++v n+l+akY+ + HBA_TRIOC 1 VLSANDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHFDLH------HGSAQIKAHGKKVVGALIEAVNHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBAD_CHLME # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 186.8 0.9 4.3e-58 4.3e-58 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 195.0 0.5 1.3e-60 1.3e-60 3 148 .. 2 141 .] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 186.8 bits; conditional E-value: 4.3e-58 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k+ +++w+kv +++ee+G eaL+r++l+yP+tk+yF++f+l+ +gse+v++hgkkv++alg+avk+ld+l++al+eLs+lHa++l+vdp nfkll++++ vvla+hl+k+++pe++aA+dkfl+ava +La+kY - HBAD_CHLME 6 DKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHFDLH------PGSEQVRGHGKKVAAALGNAVKSLDNLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKY 140 - 8999****************************************......******************************************************************************************9 PP + == domain 1 score: 195.0 bits; conditional E-value: 1.3e-60 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + L+a++k+l++++w+kv +++ee+G+eaL+r++ +yP+tk+yF++F+ + gs++v++hGkkv++alg+avk+ld+l++al++Ls+lHa++l+vdp nfkll++++ vvLa++++k+++pe++aa+dk+l++va++la+kY+ + HBAD_CHLME 2 LTADDKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHFDLH------PGSEQVRGHGKKVAAALGNAVKSLDNLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKYR 141 + 99*********************************************9......*******************************************************************************************8 PP + +>> HBAZ_HORSE + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 193.3 0.1 4.5e-60 4.5e-60 3 148 .. 2 141 .] 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 193.3 bits; conditional E-value: 4.5e-60 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + L+++e+++v ++wgk++++a+++G+eaL+rl+ +yP+tk+yF++F+ + +gs++++ahG+kv++a+g+avk++d+++gal+kLselHa+ l+vdp+nfk+ls++l+v+La+++p++ft++++aa+dk+l++v+++l++kY+ + HBAZ_HORSE 2 LTKAERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHFDLH------EGSPQLRAHGSKVAAAVGDAVKSIDNVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKYR 141 + 89*********************************************9......*******************************************************************************************8 PP >> HBA_COLLI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 183.7 0.4 3.9e-57 3.9e-57 2 142 .] 6 140 .. 5 140 .. 0.99 + 1 ! 192.7 0.2 6.7e-60 6.7e-60 2 148 .. 1 141 [] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 183.7 bits; conditional E-value: 3.9e-57 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +ks+v+av+ k+++++ ++G+eaL+rl+++yP+tk+yF++f+l+ +gs+++k+hgkkv++al+ea++h+dd+++al++Ls+lHa+kl+vdp+nfkll+++++vv+a h+p+ +tpev+a+ldkf+ av ++L++kY - HBA_COLLI 6 DKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLS------HGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 - 9*******************************************......******************************************************************************************9 PP + == domain 1 score: 192.7 bits; conditional E-value: 6.7e-60 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 2 vLsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + vLsa++k++vkav++k++++a +lG+eaLerl+++yP+tk+yF++F+ + +gsa++k+hGkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a +fp+ +tpev+a+ldk++ +v ++l+akY+ + HBA_COLLI 1 VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHFDLS------HGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR 141 + 79**********************************************9......*******************************************************************************************8 PP >> HBBL_RANCA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 183.0 0.2 6.5e-57 6.5e-57 1 142 [] 6 145 .. 6 145 .. 0.99 + 1 ! 191.2 0.2 2e-59 2e-59 4 147 .. 4 145 .. 2 146 .] 0.98 Alignments for each domain: - == domain 1 score: 183.0 bits; conditional E-value: 6.5e-57 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+ +++vw+kv+v+++ G+eaL+rl++vyP+t+ryF++f++l+s++a+ g++kv+ahgkk+l+a+++a+++ldd+k++l++Lse+Ha++lhvdpenf+ l+evlivvl ++l+k+f+p+vq+ ++kf+a++ aL++ Y - HBBL_RANCA 6 EEKAVINSVWQKVDVEQD--GHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSY 145 - 699************987..************************************************************************************************************************99 PP + == domain 1 score: 191.2 bits; conditional E-value: 2e-59 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + +aeek+ +++vw+kv+v+++ G+eaL+rl++vyP+t+ryF++F+dl+s+++++g++kv+ahGkk+l a+++a+++ldd+kg+l++Lse Ha++l+vdpenf+ l+evl+vvL ak++k+f+p+vq++++k+++++ +al++ Y + HBBL_RANCA 4 TAEEKAVINSVWQKVDVEQD--GHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSY 145 + 79***************876..************************************************************************************************************************** PP >> HBAD_PASMO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 179.6 0.1 7e-56 7e-56 1 142 [] 5 140 .. 5 140 .. 0.99 + 1 ! 190.9 0.1 2.4e-59 2.4e-59 3 148 .. 2 141 .] 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 179.6 bits; conditional E-value: 7e-56 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e+k+ ++++wgk+++++ee+Ga+aL r++++yP tk+yF++f+l+ +gs+++++hgkkv++al++a+k+ld+l++al+eLs+lHa++l+vdp+nfk+ls++l v la++l+ke++pev+ A+dkf++ava++La+kY - HBAD_PASMO 5 EDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHFDLS------QGSDQIRGHGKKVVAALSNAIKNLDNLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKY 140 - 69*******************************************......******************************************************************************************9 PP - ->> HBAZ_HORSE - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 179.1 0.1 1e-55 1e-55 2 142 .] 6 140 .. 5 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 179.1 bits; conditional E-value: 1e-55 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v ++wgk++++++++G eaL+rl+ +yP+tk+yF++f+l+ +gs++++ahg kv++a+g+avk++d++++ala+LselHa+ l+vdp+nfk+ls++l+v+la++lp++ft++++aA+dkfl++v+++L++kY - HBAZ_HORSE 6 ERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHFDLH------EGSPQLRAHGSKVAAAVGDAVKSIDNVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKY 140 - 7899****************************************......******************************************************************************************9 PP + == domain 1 score: 190.9 bits; conditional E-value: 2.4e-59 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + L+ae+k+l++++wgk+++ +ee+Ga+aL r++++yP+tk+yF++F+ + +gs+++++hGkkv++al++a+k+ld+l++al++Ls+lHa++l+vdp+nfk+ls++l v La++++ke++pev++a+dk++++va++la+kY+ + HBAD_PASMO 2 LTAEDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHFDLS------QGSDQIRGHGKKVVAALSNAIKNLDNLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKYR 141 + 9**********************************************9......*******************************************************************************************8 PP >> HBB2_XENTR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 177.0 0.7 4.4e-55 4.4e-55 1 142 [] 6 145 .. 6 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 177.0 bits; conditional E-value: 4.4e-55 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - eek+++++vwgkv+++++ G++aL+rll+vyP+t+ryF++f++l++ +av+g+ kvkahg+kvl+a+g a++hldd+k++l+ Ls++Ha++lhvdpenfk l++vl++vla++l+++ftp+vqa ++k+ a++ aL++ Y - HBB2_XENTR 6 EEKATIASVWGKVDIEQD--GHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 - 69*************987..************************************************************************************************************************99 PP - ->> MYG_PROGU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 175.8 1.6 1.1e-54 1.1e-54 2 142 .] 6 146 .. 5 146 .. 1.00 - - Alignments for each domain: - == domain 1 score: 175.8 bits; conditional E-value: 1.1e-54 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v +vwgkve+d +++G+e+L+rl++ +Pet ++Fdkfk+lk +d++ +se++k+hg++vltalg ++k++++++++la+L+++Ha+k+++++++++++se++i+vl++++p++f++++q+A++k+l++++n++a+kY - MYG_PROGU 6 EWQLVLNVWGKVEGDLSGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKY 146 - 8*******************************************************************************************************************************************9 PP - ->> MYG_LYCPI - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 174.4 5.3 2.9e-54 2.9e-54 2 142 .] 6 146 .. 5 146 .. 1.00 - - Alignments for each domain: - == domain 1 score: 174.4 bits; conditional E-value: 2.9e-54 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v ++wgkve+d +++G+e+L+rl++ +Pet ++Fdkfk+lk++d++kgse++k+hg++vltalg ++k++++++++l++L+++Ha+k+++++++++++s+++i+vl+++++++f+++++aA++k+l++++n++a+kY - MYG_LYCPI 6 EWQIVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKY 146 - 89******************************************************************************************************************************************9 PP - ->> MYG_MOUSE - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 172.4 1.6 1.2e-53 1.2e-53 2 142 .] 6 146 .. 5 146 .. 1.00 + 1 ! 188.6 0.6 1.3e-58 1.3e-58 4 147 .. 4 145 .. 2 146 .] 0.98 Alignments for each domain: - == domain 1 score: 172.4 bits; conditional E-value: 1.2e-53 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v +vwgkve+d +++G+e+L+ l++++Pet ++Fdkfk+lks++++kgse++k+hg +vltalg+++k+++++++++++L+++Ha+k+++++++++++se++i vl+++++++f++++q+A++k+l++++n++a+kY - MYG_MOUSE 6 EWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKY 146 - 8*******************************************************************************************************************************************9 PP - ->> MYG_SAISC - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 172.2 4.3 1.4e-53 1.4e-53 2 142 .] 6 146 .. 5 146 .. 1.00 - - Alignments for each domain: - == domain 1 score: 172.2 bits; conditional E-value: 1.4e-53 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v ++wgkve+d +G+e+L+ l++ +Pet ++Fdkfk+lks+d++k+se++k+hg++vltalg ++k++++++++l++L+++Ha+k+++++++++l+s+++++vl++++p++f++++q+A++k+l++++n++a+kY - MYG_SAISC 6 EWQLVLNIWGKVEADIPSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKY 146 - 8*******************************************************************************************************************************************9 PP - ->> MYG_HORSE - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 171.9 4.2 1.7e-53 1.7e-53 2 142 .] 6 146 .. 5 146 .. 1.00 - - Alignments for each domain: - == domain 1 score: 171.9 bits; conditional E-value: 1.7e-53 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e+++v +vwgkve+d +++G+e+L+rl++ +Pet ++Fdkfk+lk+++++k+se++k+hg+ vltalg ++k++++++++l++L+++Ha+k++++ ++++++s+++i+vl++++p++f++++q+A+ k+l++++n++a+kY - MYG_HORSE 6 EWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKY 146 - 8*******************************************************************************************************************************************9 PP - ->> MYG_ESCGI - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 170.2 5.7 5.6e-53 5.6e-53 2 142 .] 6 146 .. 5 146 .. 1.00 - - Alignments for each domain: - == domain 1 score: 170.2 bits; conditional E-value: 5.6e-53 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e++ v ++w kve+d +++G+++L+rl++ +Pet ++Fdkfk+lk+++++k+se++k+hg++vltalg ++k++++++++l++L+++Ha+k++++ ++++++s+++i+vl++++p++f++++qaA++k+l+++++++a+kY - MYG_ESCGI 6 EWQLVLNIWAKVEADVAGHGQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKY 146 - 8*******************************************************************************************************************************************9 PP + == domain 1 score: 188.6 bits; conditional E-value: 1.3e-58 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 4 saeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + +aeek+++++vwgkv+++++ G++aL+rllvvyP+t+ryF++F++l++ ++v+g+ kvkahG+kvl+a+g+a+++ldd+k++lk Ls++Ha++l+vdpenfk l++vlv+vLaak++++ftp+vqa+++kl +++ +al++ Y + HBB2_XENTR 4 TAEEKATIASVWGKVDIEQD--GHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 + 79**************9876..*************************************************************************************************************************9 PP >> HBA4_SALIR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 167.4 0.1 4.2e-52 4.2e-52 2 142 .] 6 141 .. 5 141 .. 0.99 + 1 ! 179.9 0.1 5.9e-56 5.9e-56 3 148 .. 2 142 .] 1 142 [] 0.99 Alignments for each domain: - == domain 1 score: 167.4 bits; conditional E-value: 4.2e-52 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - +k++v+a+wgk+ +++e+G++aL+r+l+vyP+tk yF+++ +gs+ vk+hg +++++++++v h+ddl + l++LselHa+kl+vdp+nfk+l++ livv+a+ +p+eftpe + ++dkfl+++a+aLa+kY - HBA4_SALIR 6 DKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASV-----APGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKY 141 - 8******************************************9.....9******************************************************************************************9 PP + == domain 1 score: 179.9 bits; conditional E-value: 5.9e-56 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYk 148 + Lsa++k++vka+wgk+ +++e+G++aL+r+lvvyP+tk yF+++ ++ gsa vk+hG +++++++++v ++ddl g l+kLselHatkl+vdp+nfk+l++ l+vv+aa fp+eftpe++ ++dk+l+++a ala+kY+ + HBA4_SALIR 2 LSAKDKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASV-----APGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKYR 142 + 9**********************************************9.....9*******************************************************************************************8 PP + +>> MYG_MUSAN + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 174.5 0.4 2.8e-54 2.8e-54 7 154 .] 2 148 .] 1 148 [] 0.99 + + Alignments for each domain: + == domain 1 score: 174.5 bits; conditional E-value: 2.8e-54 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 7 ekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakYkelgfqg 154 + ++++v++vw+ ve+d++++G+++L rl+++yPe++++F+kFk+ ks e+k++a++ka++++vl+alg++vkk++++++ +k+L+++H+t++k++p++f+ ++++ v vL++++p+e++++vqaa++ ++++++++++++Yk+++fqg + MYG_MUSAN 2 DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKN-KSLGELKDTADIKAQADTVLSALGNIVKKKGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEYKAANFQG 148 + 8******************************************.5******************************************************************************************************8 PP >> HBB2_TRICR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 160.5 0.0 5.8e-50 5.8e-50 1 142 [] 6 145 .] 6 145 .] 0.99 + 1 ! 168.3 0.0 2.2e-52 2.2e-52 3 147 .. 3 145 .] 1 145 [] 0.99 Alignments for each domain: - == domain 1 score: 160.5 bits; conditional E-value: 5.8e-50 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 1 eekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - e+++e++a++gkv+vd +G+++L+rl++v+P+++ryF++f++l+s+da+++++kv ahg+kv+++++ea+khld+l++ +a+Ls +H k++vdpenfkl+s ++iv+la +l+++f++++q A++k++++v++aL + Y - HBB2_TRICR 6 EDRKEIAAILGKVNVD--SLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 - 699************8..69************************************************************************************************************************98 PP - ->> MYG_MUSAN - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 145.5 0.4 2.3e-45 2.3e-45 2 142 .] 2 141 .. 1 141 [. 0.99 - - Alignments for each domain: - == domain 1 score: 145.5 bits; conditional E-value: 2.3e-45 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02185|MYG_PHYCD-i2 2 ekseveavwgkvevdkeeaGaeaLgrlllvyPetkryFdkfkllkskdavkgsekvkahgkkvltalgeavkhlddlkkalaeLselHaaklhvdpenfkllsevlivvlaihlpkeftpevqaAldkflaavanaLarkY 142 - ++++v++vw+ ve+d +++G+++L rl+ +yPe++++F+kfk+ ks ++k+++++ka+ ++vl+alg++vk+++++++ +++L+ +H+++++++p++f+ ++++ + vl++++p+e++++vqaA++ ++++++++++++Y - MYG_MUSAN 2 DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKN-KSLGELKDTADIKAQADTVLSALGNIVKKKGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEY 141 - 8******************************************.5*********************************************************************************************999 PP + == domain 1 score: 168.3 bits; conditional E-value: 2.2e-52 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02185|MYG_PHYCD-i2 3 LsaeekqlvkavwgkvevdaeelGaeaLerllvvyPetkryFdkFkdlksedevkgsakvkahGkkvltalgeavkklddlkgalkkLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllelvanalaakY 147 + L+ae++++++a++gkv+vd +lG+++L+rl+vv+P+++ryF++F+dl+s+d++++++kv ahG+kv++++ ea+k+ld+l++ +++Ls +H+ k+ vdpenfkl+s +++v+La +++++f+++ q a++kl+++v++al + Y + HBB2_TRICR 3 LTAEDRKEIAAILGKVNVD--SLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 + 9*****************8..69************************************************************************************************************************99 PP Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (142 nodes) -Target sequences: 45 (6519 residues searched) +Query model(s): 1 (154 nodes) +Target sequences: 45 (6519 residues searched) Passed MSV filter: 45 (1); expected 0.9 (0.02) Passed bias filter: 45 (1); expected 0.9 (0.02) Passed Vit filter: 45 (1); expected 0.0 (0.001) Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.35u 0.00s 00:00:00.35 Elapsed: 00:00:00.83 -# Mc/sec: 1.12 +# CPU time: 0.19u 0.00s 00:00:00.19 Elapsed: 00:00:00.18 +# Mc/sec: 5.41 @@ New targets included: 0 @@ New alignment includes: 46 subseqs (was 46), including original query @@ -2542,16 +2541,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (147 nodes) -Target sequences: 45 (6519 residues searched) +Query model(s): 1 (147 nodes) +Target sequences: 45 (6519 residues searched) Passed MSV filter: 45 (1); expected 0.9 (0.02) Passed bias filter: 45 (1); expected 0.9 (0.02) Passed Vit filter: 45 (1); expected 0.0 (0.001) Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.13 -# Mc/sec: 7.37 +# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 +# Mc/sec: 31.81 @@ New targets included: 45 @@ New alignment includes: 46 subseqs (was 1), including original query @@ -2560,660 +2559,660 @@ @@ @@ Round: 2 @@ Included in MSA: 46 subsequences (query + 45 subseqs from 45 targets) -@@ Model size: 143 positions +@@ Model size: 147 positions @@ Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- - 1.4e-71 230.4 0.0 1.5e-71 230.3 0.0 1.0 1 HBB_MANSP - 5.9e-71 228.4 0.1 6.6e-71 228.2 0.1 1.0 1 HBB_URSMA - 5.8e-70 225.2 0.3 6.4e-70 225.0 0.3 1.0 1 HBB_RABIT - 2e-69 223.4 0.0 2.2e-69 223.3 0.0 1.0 1 HBB_SUNMU - 2.4e-69 223.1 0.1 2.7e-69 223.0 0.1 1.0 1 HBB_CALAR - 3.4e-69 222.7 0.1 3.8e-69 222.5 0.1 1.0 1 HBB_EQUHE - 4.2e-69 222.4 0.0 4.7e-69 222.2 0.0 1.0 1 HBB_COLLI - 7.3e-69 221.6 0.1 8.1e-69 221.4 0.1 1.0 1 HBB_TACAC - 1.3e-68 220.8 0.1 1.5e-68 220.6 0.1 1.0 1 HBE_PONPY - 3e-68 219.6 0.4 3.3e-68 219.5 0.4 1.0 1 HBB_SPECI - 5.3e-68 218.8 0.2 5.9e-68 218.7 0.2 1.0 1 HBB_SPETO - 1.3e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 HBB_ORNAN - 1.4e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 HBB_TRIIN - 2.5e-67 216.6 0.0 2.8e-67 216.5 0.0 1.0 1 HBB_LARRI - 6.5e-66 212.0 0.0 7.2e-66 211.9 0.0 1.0 1 HBB_TUPGL - 6e-65 208.9 0.0 6.6e-65 208.8 0.0 1.0 1 HBB1_VAREX - 1.9e-62 200.8 0.3 2.1e-62 200.6 0.3 1.0 1 HBA_MESAU - 1.9e-61 197.6 0.7 2.1e-61 197.4 0.7 1.0 1 HBA_PONPY - 2.7e-61 197.0 0.1 3.1e-61 196.9 0.1 1.0 1 HBBL_RANCA - 3.6e-61 196.6 0.3 4.1e-61 196.5 0.3 1.0 1 HBA_MACFA - 5.2e-61 196.1 0.2 5.8e-61 196.0 0.2 1.0 1 HBA_MACSI - 9e-61 195.4 0.1 1e-60 195.2 0.1 1.0 1 HBA_AILME - 1.6e-60 194.6 0.4 1.8e-60 194.4 0.4 1.0 1 HBB2_XENTR - 2.7e-60 193.8 0.5 3e-60 193.7 0.5 1.0 1 HBA2_GALCR - 3e-60 193.7 0.4 3.3e-60 193.5 0.4 1.0 1 HBA_FRAPO - 3e-60 193.7 0.4 3.4e-60 193.5 0.4 1.0 1 HBA_PHACO - 3.2e-60 193.6 0.3 3.5e-60 193.4 0.3 1.0 1 HBA2_BOSMU - 1e-59 191.9 0.1 1.1e-59 191.8 0.1 1.0 1 HBA_ERIEU - 1.4e-59 191.5 0.0 1.5e-59 191.4 0.0 1.0 1 HBA_PROLO - 1.6e-59 191.3 0.4 1.8e-59 191.1 0.4 1.0 1 HBA_ANSSE - 1.7e-59 191.2 0.5 1.9e-59 191.1 0.5 1.0 1 HBA_PAGLA - 1.1e-58 188.6 0.5 1.2e-58 188.4 0.5 1.0 1 HBA_TRIOC - 2.9e-58 187.2 0.6 3.2e-58 187.1 0.6 1.0 1 HBAD_CHLME - 3.4e-58 187.0 0.1 3.8e-58 186.9 0.1 1.0 1 HBAZ_HORSE - 6.7e-58 186.1 0.2 7.4e-58 185.9 0.2 1.0 1 HBA_COLLI - 8.9e-58 185.7 0.1 9.9e-58 185.5 0.1 1.0 1 HBAD_PASMO - 1.1e-56 182.1 1.9 1.3e-56 181.9 1.9 1.0 1 MYG_LYCPI - 1.1e-56 182.1 1.1 1.3e-56 181.9 1.1 1.0 1 MYG_SAISC - 2.5e-56 181.0 1.7 2.8e-56 180.8 1.7 1.0 1 MYG_ESCGI - 3.2e-56 180.6 0.2 3.6e-56 180.4 0.2 1.0 1 MYG_PROGU - 9.5e-56 179.1 1.0 1.1e-55 178.9 1.0 1.0 1 MYG_HORSE - 1.8e-55 178.2 0.3 2e-55 178.0 0.3 1.0 1 MYG_MOUSE - 3.4e-55 177.3 0.1 3.8e-55 177.1 0.1 1.0 1 HBA4_SALIR - 1.8e-53 171.7 0.0 2e-53 171.6 0.0 1.0 1 HBB2_TRICR - 1e-44 143.3 0.3 1.1e-44 143.2 0.3 1.0 1 MYG_MUSAN + 3.6e-74 238.9 0.1 4e-74 238.8 0.1 1.0 1 HBB_MANSP + 1.7e-73 236.7 0.3 1.9e-73 236.6 0.3 1.0 1 HBB_URSMA + 2.2e-72 233.1 0.8 2.4e-72 233.0 0.8 1.0 1 HBB_RABIT + 5.4e-72 231.8 0.1 6e-72 231.7 0.1 1.0 1 HBB_SUNMU + 7e-72 231.5 0.2 7.7e-72 231.3 0.2 1.0 1 HBB_CALAR + 9.6e-72 231.0 0.0 1.1e-71 230.9 0.0 1.0 1 HBB_COLLI + 2.5e-71 229.7 0.4 2.8e-71 229.6 0.4 1.0 1 HBB_TACAC + 4.8e-71 228.8 0.4 5.3e-71 228.6 0.4 1.0 1 HBE_PONPY + 5.1e-71 228.7 0.2 5.7e-71 228.5 0.2 1.0 1 HBB_EQUHE + 1.3e-70 227.3 1.0 1.5e-70 227.2 1.0 1.0 1 HBB_SPECI + 2e-70 226.8 0.6 2.2e-70 226.6 0.6 1.0 1 HBB_SPETO + 3.7e-70 225.9 0.1 4.1e-70 225.8 0.1 1.0 1 HBB_TRIIN + 4.1e-70 225.7 0.0 4.6e-70 225.6 0.0 1.0 1 HBB_ORNAN + 5.7e-70 225.3 0.0 6.4e-70 225.1 0.0 1.0 1 HBB_LARRI + 1.8e-68 220.5 0.0 1.9e-68 220.3 0.0 1.0 1 HBB_TUPGL + 1.5e-67 217.4 0.1 1.7e-67 217.3 0.1 1.0 1 HBB1_VAREX + 7.8e-64 205.4 0.3 8.7e-64 205.2 0.3 1.0 1 HBBL_RANCA + 4.5e-63 202.9 0.3 5e-63 202.8 0.3 1.0 1 HBA_MESAU + 2e-62 200.8 0.8 2.3e-62 200.6 0.8 1.0 1 HBB2_XENTR + 4.6e-62 199.6 0.7 5e-62 199.5 0.7 1.0 1 HBA_PONPY + 8.7e-62 198.7 0.3 9.6e-62 198.6 0.3 1.0 1 HBA_MACFA + 1.3e-61 198.2 0.3 1.4e-61 198.1 0.3 1.0 1 HBA_MACSI + 2.1e-61 197.5 0.1 2.4e-61 197.3 0.1 1.0 1 HBA_AILME + 6.6e-61 195.9 0.6 7.3e-61 195.7 0.6 1.0 1 HBA2_GALCR + 7.1e-61 195.8 0.4 7.8e-61 195.7 0.4 1.0 1 HBA_FRAPO + 7.3e-61 195.7 0.4 8e-61 195.6 0.4 1.0 1 HBA_PHACO + 7.6e-61 195.7 0.4 8.3e-61 195.6 0.4 1.0 1 HBA2_BOSMU + 2.4e-60 194.0 0.1 2.7e-60 193.9 0.1 1.0 1 HBA_ERIEU + 3.3e-60 193.6 0.0 3.6e-60 193.5 0.0 1.0 1 HBA_PROLO + 3.9e-60 193.4 0.4 4.3e-60 193.2 0.4 1.0 1 HBA_ANSSE + 4.1e-60 193.3 0.5 4.5e-60 193.2 0.5 1.0 1 HBA_PAGLA + 2.7e-59 190.7 0.5 2.9e-59 190.5 0.5 1.0 1 HBA_TRIOC + 6.3e-59 189.4 0.5 7e-59 189.3 0.5 1.0 1 HBAD_CHLME + 7.5e-59 189.2 0.1 8.2e-59 189.1 0.1 1.0 1 HBAZ_HORSE + 1.6e-58 188.1 0.2 1.8e-58 188.0 0.2 1.0 1 HBA_COLLI + 2e-58 187.8 0.1 2.2e-58 187.7 0.1 1.0 1 HBAD_PASMO + 2.9e-57 184.1 1.0 3.2e-57 183.9 1.0 1.0 1 MYG_SAISC + 3e-57 184.0 1.9 3.3e-57 183.9 1.9 1.0 1 MYG_LYCPI + 8.3e-57 182.6 0.2 9.2e-57 182.4 0.2 1.0 1 MYG_PROGU + 8.8e-57 182.5 2.3 9.7e-57 182.4 2.3 1.0 1 MYG_ESCGI + 2.5e-56 181.0 1.0 2.7e-56 180.9 1.0 1.0 1 MYG_HORSE + 4.7e-56 180.1 0.3 5.2e-56 180.0 0.3 1.0 1 MYG_MOUSE + 7.5e-56 179.5 0.1 8.3e-56 179.3 0.1 1.0 1 HBA4_SALIR + 2.7e-55 177.7 0.0 3e-55 177.5 0.0 1.0 1 HBB2_TRICR + 4.6e-45 144.5 0.3 5.1e-45 144.3 0.3 1.0 1 MYG_MUSAN Domain annotation for each sequence (and alignments): >> HBB_MANSP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 230.3 0.0 1.5e-71 1.5e-71 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 238.8 0.1 4e-74 4e-74 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 230.3 bits; conditional E-value: 1.5e-71 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l++eek++v+++wgkv++devG+eaL rllvvyP+t+r+Fd+F+dlss+dav+g++kvkahgkkvl a+++++++ld+lkg++a+LselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++a+vanala+kY - HBB_MANSP 3 LTPEEKTAVTTLWGKVNVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 699*******************************************************************************************************************************************9 PP + == domain 1 score: 238.8 bits; conditional E-value: 4e-74 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhl++eek++v+++wgkv++devG+eaL rllvvyP+t+r+Fd+F+dlss+dav+g++kvkahGkkvl a+++++++ld+lkg++a+LselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++a+vanala+kYh + HBB_MANSP 1 VHLTPEEKTAVTTLWGKVNVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLDNLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_URSMA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 228.2 0.1 6.6e-71 6.6e-71 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 236.6 0.3 1.9e-73 1.9e-73 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 228.2 bits; conditional E-value: 6.6e-71 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+ eek+lv+ +wgkv++devG+eaL rllvvyP+t+r+Fd+F+dlss+da+++++kvkahgkkvl+++++++k+ld+lkg++akLselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++a+vanala+kY - HBB_URSMA 3 LTGEEKSLVTGLWGKVNVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP + == domain 1 score: 236.6 bits; conditional E-value: 1.9e-73 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhl+ eek+lv+ +wgkv++devG+eaL rllvvyP+t+r+Fd+F+dlss+da+++++kvkahGkkvl+++++++k+ld+lkg++akLselH++kl+vdpenfkll++vlv+vLa++f+keftp+vqaa++k++a+vanala+kYh + HBB_URSMA 1 VHLTGEEKSLVTGLWGKVNVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_RABIT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 225.0 0.3 6.4e-70 6.4e-70 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 233.0 0.8 2.4e-72 2.4e-72 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 225.0 bits; conditional E-value: 6.4e-70 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+eek++v+a+wgkv+++evG+eaL rllvvyP+t+r+F++F+dlss++av++++kvkahgkkvl+a++e++++ld+lkg++akLselH++kl+vdpenf+ll++vlv+vL+++f+keftp+vqaa++k++a+vanala+kY - HBB_RABIT 3 LSSEEKSAVTALWGKVNVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP + == domain 1 score: 233.0 bits; conditional E-value: 2.4e-72 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls+eek++v+a+wgkv+++evG+eaL rllvvyP+t+r+F++F+dlss++av++++kvkahGkkvl+a++e++++ld+lkg++akLselH++kl+vdpenf+ll++vlv+vL+++f+keftp+vqaa++k++a+vanala+kYh + HBB_RABIT 1 VHLSSEEKSAVTALWGKVNVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_SUNMU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 223.3 0.0 2.2e-69 2.2e-69 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 231.7 0.1 6e-72 6e-72 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 223.3 bits; conditional E-value: 2.2e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls eeka v+ +wgkv++devGaeaL rllvvyP+t+r+Fd+F+dlss++av+g++kvkahgkkvl++lge+v +ld+lkg++akLselH++kl+vdpenf+ll++vlvvvLa+kf+keftp vqaa++k++a+vanala+kY - HBB_SUNMU 3 LSGEEKACVTGLWGKVNEDEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP + == domain 1 score: 231.7 bits; conditional E-value: 6e-72 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls eeka v+ +wgkv++devGaeaL rllvvyP+t+r+Fd+F+dlss++av+g++kvkahGkkvl++lge+v +ld+lkg++akLselH++kl+vdpenf+ll++vlvvvLa+kf+keftp vqaa++k++a+vanala+kYh + HBB_SUNMU 1 VHLSGEEKACVTGLWGKVNEDEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_CALAR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 223.0 0.1 2.7e-69 2.7e-69 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 231.3 0.2 7.7e-72 7.7e-72 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 223.0 bits; conditional E-value: 2.7e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+ eek++v+a+wgkv++devG+eaL rllvvyP+t+r+F++F+dls++dav++++kvkahgkkvl a+++++++ld+lkg++a+LselH++kl+vdpenf+ll++vlv+vLa++f+keftp vqaa++k++a+vanala+kY - HBB_CALAR 3 LTGEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP - ->> HBB_EQUHE - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 222.5 0.1 3.8e-69 3.8e-69 1 143 [] 3 145 .. 3 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 222.5 bits; conditional E-value: 3.8e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls eeka+v a+w+kv+++evG+eaL rllvvyP+t+r+Fd+F+dls+++av+g++kvkahgkkvl+++ge+v++ld+lkg++a+LselH++kl+vdpenf+ll++vlvvvLa++f+k+ftpe qa+++k++a+vanala+kY - HBB_EQUHE 3 LSGEEKAAVLALWDKVNEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP + == domain 1 score: 231.3 bits; conditional E-value: 7.7e-72 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhl+ eek++v+a+wgkv++devG+eaL rllvvyP+t+r+F++F+dls++dav++++kvkahGkkvl a+++++++ld+lkg++a+LselH++kl+vdpenf+ll++vlv+vLa++f+keftp vqaa++k++a+vanala+kYh + HBB_CALAR 1 VHLTGEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLDNLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_COLLI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 222.2 0.0 4.7e-69 4.7e-69 1 143 [] 3 145 .. 3 145 .. 1.00 + 1 ! 230.9 0.0 1.1e-71 1.1e-71 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 222.2 bits; conditional E-value: 4.7e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - +saeek+l++++wgkv++ ++GaeaL+rll+vyP+t+r+F++F++lss++a++g+++vkahgkkvlt++g+avk+ld++kg++a+LselH++kl+vdpenf+ll+++lv++Laa+f+k+ftpe+qaa++kl+++va+ala+kY - HBB_COLLI 3 WSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKY 145 - 79********************************************************************************************************************************************9 PP + == domain 1 score: 230.9 bits; conditional E-value: 1.1e-71 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vh+saeek+l++++wgkv++ ++GaeaL+rll+vyP+t+r+F++F++lss++a++g+++vkahGkkvlt++g+avk+ld++kg++a+LselH++kl+vdpenf+ll+++lv++Laa+f+k+ftpe+qaa++kl+++va+ala+kYh + HBB_COLLI 1 VHWSAEEKQLITSIWGKVNVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_TACAC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 221.4 0.1 8.1e-69 8.1e-69 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 229.6 0.4 2.8e-71 2.8e-71 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 221.4 bits; conditional E-value: 8.1e-69 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls +ek++v+++wg+v+++e+G+eaL rllvvyP+t+r+F++F+dlss+dav+g+akvkahg+kvlt++g+a+k+ld+lkg++akLselH++kl+vdpenf+ l++vlvvvLa++f+keftpe+qaa++kl+++v++ala+kY - HBB_TACAC 3 LSGSEKTAVTNLWGHVNVNELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKY 145 - 6889******************************************************************************************************************************************9 PP + == domain 1 score: 229.6 bits; conditional E-value: 2.8e-71 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls +ek++v+++wg+v+++e+G+eaL rllvvyP+t+r+F++F+dlss+dav+g+akvkahG+kvlt++g+a+k+ld+lkg++akLselH++kl+vdpenf+ l++vlvvvLa++f+keftpe+qaa++kl+++v++ala+kYh + HBB_TACAC 1 VHLSGSEKTAVTNLWGHVNVNELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLDNLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBE_PONPY # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 220.6 0.1 1.5e-68 1.5e-68 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 228.6 0.4 5.3e-71 5.3e-71 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 220.6 bits; conditional E-value: 1.5e-68 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ++aeeka+v+++w+k++++e+G+eaL rllvvyP+t+r+Fd+F++lss++a+ g++kvkahgkkvlt++g+a+k++d+lk+++akLselH++kl+vdpenfkll++v+v++La++f+keftpevqaa++kl++ava ala+kY - HBE_PONPY 3 FTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKY 145 - 589*******************************************************************************************************************************************9 PP + == domain 1 score: 228.6 bits; conditional E-value: 5.3e-71 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vh++aeeka+v+++w+k++++e+G+eaL rllvvyP+t+r+Fd+F++lss++a+ g++kvkahGkkvlt++g+a+k++d+lk+++akLselH++kl+vdpenfkll++v+v++La++f+keftpevqaa++kl++ava ala+kYh + HBE_PONPY 1 VHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH 146 + 8************************************************************************************************************************************************8 PP + +>> HBB_EQUHE + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 228.5 0.2 5.7e-71 5.7e-71 2 147 .] 1 146 [] 1 146 [] 0.99 + + Alignments for each domain: + == domain 1 score: 228.5 bits; conditional E-value: 5.7e-71 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + v+ls eeka+v a+w+kv+++evG+eaL rllvvyP+t+r+Fd+F+dls+++av+g++kvkahGkkvl+++ge+v++ld+lkg++a+LselH++kl+vdpenf+ll++vlvvvLa++f+k+ftpe qa+++k++a+vanala+kYh + HBB_EQUHE 1 VQLSGEEKAAVLALWDKVNEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH 146 + 789**********************************************************************************************************************************************8 PP >> HBB_SPECI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 219.5 0.4 3.3e-68 3.3e-68 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 227.2 1.0 1.5e-70 1.5e-70 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 219.5 bits; conditional E-value: 3.3e-68 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ ek++++++wgkv+a evGaeaL rllvvyP+t+r+Fd+F+dlss++av+g+akvkahgkkv++++++++k+ld+lkg++a+LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++a+vanala+kY - HBB_SPECI 3 LSDGEKNAISTAWGKVHAAEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKY 145 - 6789******************************************************************************************************************************************9 PP + == domain 1 score: 227.2 bits; conditional E-value: 1.5e-70 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls+ ek++++++wgkv+a evGaeaL rllvvyP+t+r+Fd+F+dlss++av+g+akvkahGkkv++++++++k+ld+lkg++a+LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++a+vanala+kYh + HBB_SPECI 1 VHLSDGEKNAISTAWGKVHAAEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_SPETO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 218.7 0.2 5.9e-68 5.9e-68 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 226.6 0.6 2.2e-70 2.2e-70 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 218.7 bits; conditional E-value: 5.9e-68 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l++ ek++++++wgkv+a e+GaeaL rllvvyP+t+r+Fd+F+dlss++av+g+akvkahgkkv++++++++k+ld+lkg++a+LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++a+vanal++kY - HBB_SPETO 3 LTDGEKNAISTAWGKVNAAEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKY 145 - 6889******************************************************************************************************************************************9 PP - ->> HBB_ORNAN - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 217.3 0.0 1.5e-67 1.5e-67 1 143 [] 3 145 .. 3 145 .. 0.99 - - Alignments for each domain: - == domain 1 score: 217.3 bits; conditional E-value: 1.5e-67 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls ek++v+++wgkv+++e+G+eaL rllvvyP+t+r+F+ F+dlss+ av+g++kvkahg+kvlt++g+a+k+lddlkg++akLselH++kl+vdpenf+ l++vl+vvLa++f+k+f+pevqaa++kl+++va+al++kY - HBB_ORNAN 3 LSGGEKSAVTNLWGKVNINELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKY 145 - 5788******************************************************************************************************************************************9 PP + == domain 1 score: 226.6 bits; conditional E-value: 2.2e-70 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhl++ ek++++++wgkv+a e+GaeaL rllvvyP+t+r+Fd+F+dlss++av+g+akvkahGkkv++++++++k+ld+lkg++a+LselH++kl+vdpenfkll++++v+v+a++++k+ftpe+qaa++k++a+vanal++kYh + HBB_SPETO 1 VHLTDGEKNAISTAWGKVNAAEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLDNLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_TRIIN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 217.3 0.0 1.5e-67 1.5e-67 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 225.8 0.1 4.1e-70 4.1e-70 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 217.3 bits; conditional E-value: 1.5e-67 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l++eekalv +w kv+++e+G+eaL rllvvyP+t+r+F++F+dlss++a+++++kvkahg+kv+t++g+++k+l+dlkga+a+LselH++kl+vdpenf+ll++vlv+vLa++f+kef+pe+qaa++k++a+vanala+kY - HBB_TRIIN 3 LTPEEKALVIGLWAKVNVKEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKY 145 - 699*******************************************************************************************************************************************9 PP + == domain 1 score: 225.8 bits; conditional E-value: 4.1e-70 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhl++eekalv +w kv+++e+G+eaL rllvvyP+t+r+F++F+dlss++a+++++kvkahG+kv+t++g+++k+l+dlkga+a+LselH++kl+vdpenf+ll++vlv+vLa++f+kef+pe+qaa++k++a+vanala+kYh + HBB_TRIIN 1 VHLTPEEKALVIGLWAKVNVKEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLEDLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP + +>> HBB_ORNAN + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 225.6 0.0 4.6e-70 4.6e-70 2 147 .] 1 146 [] 1 146 [] 1.00 + + Alignments for each domain: + == domain 1 score: 225.6 bits; conditional E-value: 4.6e-70 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls ek++v+++wgkv+++e+G+eaL rllvvyP+t+r+F+ F+dlss+ av+g++kvkahG+kvlt++g+a+k+lddlkg++akLselH++kl+vdpenf+ l++vl+vvLa++f+k+f+pevqaa++kl+++va+al++kYh + HBB_ORNAN 1 VHLSGGEKSAVTNLWGKVNINELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLDDLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_LARRI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 216.5 0.0 2.8e-67 2.8e-67 1 143 [] 3 145 .. 3 145 .. 1.00 + 1 ! 225.1 0.0 6.4e-70 6.4e-70 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 216.5 bits; conditional E-value: 2.8e-67 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - +saeek+l++ +wgkv++ ++GaeaL+rll+vyP+t+r+F +F++lss++a++g++ v+ahgkkvlt++geavk+ld++k+++a+LselH++kl+vdpenf+ll+++l++vLaa+f k+ftp+ qaa++kl+++va+ala+kY - HBB_LARRI 3 WSAEEKQLITGLWGKVNVADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKY 145 - 79********************************************************************************************************************************************9 PP + == domain 1 score: 225.1 bits; conditional E-value: 6.4e-70 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vh+saeek+l++ +wgkv++ ++GaeaL+rll+vyP+t+r+F +F++lss++a++g++ v+ahGkkvlt++geavk+ld++k+++a+LselH++kl+vdpenf+ll+++l++vLaa+f k+ftp+ qaa++kl+++va+ala+kYh + HBB_LARRI 1 VHWSAEEKQLITGLWGKVNVADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB_TUPGL # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 211.9 0.0 7.2e-66 7.2e-66 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 220.3 0.0 1.9e-68 1.9e-68 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 211.9 bits; conditional E-value: 7.2e-66 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls eeka+v+ +wgkv+ ++vG++ L ll+vyP+t+r+Fd+F+dlss++av++++kvkahgkkvlt++++++++ld+lkg++akLselH++kl+vdpenf+ll++vlv vLa++f+ eftp+vqaa++k++a+vanala+kY - HBB_TUPGL 3 LSGEEKAAVTGLWGKVDLEKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKY 145 - 689*******************************************************************************************************************************************9 PP + == domain 1 score: 220.3 bits; conditional E-value: 1.9e-68 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vhls eeka+v+ +wgkv+ ++vG++ L ll+vyP+t+r+Fd+F+dlss++av++++kvkahGkkvlt++++++++ld+lkg++akLselH++kl+vdpenf+ll++vlv vLa++f+ eftp+vqaa++k++a+vanala+kYh + HBB_TUPGL 1 VHLSGEEKAAVTGLWGKVDLEKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLDNLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKYH 146 + 8************************************************************************************************************************************************8 PP >> HBB1_VAREX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 208.8 0.0 6.6e-65 6.6e-65 1 143 [] 3 145 .. 3 145 .. 1.00 - - Alignments for each domain: - == domain 1 score: 208.8 bits; conditional E-value: 6.6e-65 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ++aeek+l+ ++wgk++++ +G+e+L+ llv yP+t+r+F++F++lss++a++g+++vkahgkkvlt++g+a+k+ld++k+++akLselH++kl+vdp+nfkll++vlv+vLa +++keftp+++aa++kl+++v+++la++Y - HBB1_VAREX 3 WTAEEKQLICSLWGKIDVGLIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRY 145 - 79*******************************************************************************************************************************************99 PP - ->> HBA_MESAU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 200.6 0.3 2.1e-62 2.1e-62 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 217.3 0.1 1.7e-67 1.7e-67 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 200.6 bits; conditional E-value: 2.1e-62 - xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k++++++wgk+ +a+e+GaeaLer++ vyP+tk+yF++F d+s +gsa+vk+hgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p++ftp+v+a+ldk++a+v+++l++kY - HBA_MESAU 2 LSAKDKTNISEAWGKIggHAGEYGAEALERMFFVYPTTKTYFPHF-DVS-----HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKY 140 - 699*************8889*************************.999.....******************************************************************************************9 PP - ->> HBA_PONPY - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 197.4 0.7 2.1e-61 2.1e-61 1 143 [] 2 140 .. 2 140 .. 0.98 - - Alignments for each domain: - == domain 1 score: 197.4 bits; conditional E-value: 2.1e-61 - xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k++vk++wgkv +a+++GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY - HBA_PONPY 2 LSPADKTNVKTAWGKVgaHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 6899************77789************************.**9.....******************************************************************************************9 PP + == domain 1 score: 217.3 bits; conditional E-value: 1.7e-67 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vh++aeek+l+ ++wgk++++ +G+e+L+ llv yP+t+r+F++F++lss++a++g+++vkahGkkvlt++g+a+k+ld++k+++akLselH++kl+vdp+nfkll++vlv+vLa +++keftp+++aa++kl+++v+++la++Yh + HBB1_VAREX 1 VHWTAEEKQLICSLWGKIDVGLIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLDNIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRYH 146 + 8************************************************************************************************************************************************8 PP >> HBBL_RANCA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.9 0.1 3.1e-61 3.1e-61 1 143 [] 3 145 .. 3 145 .. 1.00 - - Alignments for each domain: - == domain 1 score: 196.9 bits; conditional E-value: 3.1e-61 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ++aeeka +++vw+kv++++ G+eaL+rl++vyP+t+ryF++F+dlss++a++g++kv+ahgkk+l a+++a+++ldd+kg+l++Lse Ha++l+vdpenf+ l+evl+vvL ak++k+f+p+vq+ ++k++a++ +al++ Y - HBBL_RANCA 3 WTAEEKAVINSVWQKVDVEQDGHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSY 145 - 79*******************************************************************************************************************************************99 PP - ->> HBA_MACFA - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.5 0.3 4.1e-61 4.1e-61 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 205.2 0.3 8.7e-64 8.7e-64 2 147 .] 1 146 [] 1 146 [] 1.00 Alignments for each domain: - == domain 1 score: 196.5 bits; conditional E-value: 4.1e-61 - xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k++vka+wgkv +a+e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY - HBA_MACFA 2 LSPADKTNVKAAWGKVggHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 6899************8889*************************.**9.....******************************************************************************************9 PP - ->> HBA_MACSI + == domain 1 score: 205.2 bits; conditional E-value: 8.7e-64 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakYh 147 + vh++aeeka +++vw+kv++++ G+eaL+rl++vyP+t+ryF++F+dlss++a++g++kv+ahGkk+l a+++a+++ldd+kg+l++Lse Ha++l+vdpenf+ l+evl+vvL ak++k+f+p+vq+ ++k++a++ +al++ Yh + HBBL_RANCA 1 VHWTAEEKAVINSVWQKVDVEQDGHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLDDVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSYH 146 + 8************************************************************************************************************************************************8 PP + +>> HBA_MESAU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 196.0 0.2 5.8e-61 5.8e-61 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 202.8 0.3 5e-63 5e-63 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 196.0 bits; conditional E-value: 5.8e-61 + == domain 1 score: 202.8 bits; conditional E-value: 5e-63 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k++vk++wgkv +a+e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hgkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY - HBA_MACSI 2 LSPADKTNVKDAWGKVggHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 - 6899************8889*************************.**9.....******************************************************************************************9 PP - ->> HBA_AILME - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 195.2 0.1 1e-60 1e-60 1 143 [] 2 140 .. 2 140 .. 0.99 - - Alignments for each domain: - == domain 1 score: 195.2 bits; conditional E-value: 1e-60 - xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k++vka w+k+ +a+e+G+eaLer + ++P+tk+yF++F dls gsa+vkahgkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk+++av+++l++kY - HBA_AILME 2 LSPADKTNVKATWDKIggHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKY 140 - 6899************8889*************************.**9.....9*****************************************************************************************9 PP + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k++++++wgk+ +a+e+GaeaLer++ vyP+tk+yF++F d+s +gsa+vk+hGkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p++ftp+v+a+ldk++a+v+++l++kY + HBA_MESAU 2 LSAKDKTNISEAWGKIggHAGEYGAEALERMFFVYPTTKTYFPHF-DVS-----HGSAQVKGHGKKVADALTNAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKY 140 + 89**************8889*************************.999.....******************************************************************************************* PP >> HBB2_XENTR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 194.4 0.4 1.8e-60 1.8e-60 1 143 [] 3 145 .. 3 145 .. 0.99 + 1 ! 200.6 0.8 2.3e-62 2.3e-62 2 146 .. 1 145 [. 1 146 [] 1.00 + + Alignments for each domain: + == domain 1 score: 200.6 bits; conditional E-value: 2.3e-62 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + vh++aeeka++++vwgkv++++ G++aL+rllvvyP+t+ryF++F++ls+ +av+g+ kvkahG+kvl+a+g+a+++ldd+k++l+ Ls++Ha++l+vdpenfk l++vlv+vLaak++++ftp+vqa ++kl a++ +al++ Y + HBB2_XENTR 1 VHWTAEEKATIASVWGKVDIEQDGHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 + 8***********************************************************************************************************************************************9 PP + +>> HBA_PONPY + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 199.5 0.7 5e-62 5e-62 4 146 .. 2 140 .. 1 141 [] 0.98 + + Alignments for each domain: + == domain 1 score: 199.5 bits; conditional E-value: 5e-62 + xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k++vk++wgkv +a+++GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hGkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY + HBA_PONPY 2 LSPADKTNVKTAWGKVgaHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKDHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 + 799*************77789************************.**9.....******************************************************************************************* PP + +>> HBA_MACFA + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 198.6 0.3 9.6e-62 9.6e-62 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 194.4 bits; conditional E-value: 1.8e-60 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ++aeeka++++vwgkv++++ G++aL+rllvvyP+t+ryF++F++ls+ +av+g+ kvkahg+kvl+a+g+a+++ldd+k++l+ Ls++Ha++l+vdpenfk l++vlv+vLaak++++ftp+vqa ++kl a++ +al++ Y - HBB2_XENTR 3 WTAEEKATIASVWGKVDIEQDGHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLDDVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY 145 - 79*******************************************************************************************************************************************99 PP + == domain 1 score: 198.6 bits; conditional E-value: 9.6e-62 + xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k++vka+wgkv +a+e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hGkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY + HBA_MACFA 2 LSPADKTNVKAAWGKVggHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 + 799*************8889*************************.**9.....******************************************************************************************* PP + +>> HBA_MACSI + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 198.1 0.3 1.4e-61 1.4e-61 4 146 .. 2 140 .. 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 198.1 bits; conditional E-value: 1.4e-61 + xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k++vk++wgkv +a+e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hGkkv++al+ av ++dd+ +al++Ls+lHa+kl+vdp+nfklls++l+v+Laa++p+eftp+v+a+ldk+la+v+++l++kY + HBA_MACSI 2 LSPADKTNVKDAWGKVggHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVDDMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 + 799*************8889*************************.**9.....******************************************************************************************* PP + +>> HBA_AILME + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 197.3 0.1 2.4e-61 2.4e-61 4 146 .. 2 140 .. 1 141 [] 0.99 + + Alignments for each domain: + == domain 1 score: 197.3 bits; conditional E-value: 2.4e-61 + xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k++vka w+k+ +a+e+G+eaLer + ++P+tk+yF++F dls gsa+vkahGkkv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk+++av+++l++kY + HBA_AILME 2 LSPADKTNVKATWDKIggHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTTAVGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKY 140 + 799*************8889*************************.**9.....9****************************************************************************************** PP >> HBA2_GALCR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.7 0.5 3e-60 3e-60 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 195.7 0.6 7.3e-61 7.3e-61 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 193.7 bits; conditional E-value: 3e-60 + == domain 1 score: 195.7 bits; conditional E-value: 7.3e-61 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k++vka+w+kv +a+++GaeaLer++ ++P+tk+yF++F dls +gs++vk+hgkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfkll ++l+v+La+++p+eftp+v+a+ldk++a+v+++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k++vka+w+kv +a+++GaeaLer++ ++P+tk+yF++F dls +gs++vk+hGkkv++al++av ++dd+ +al++Ls+lHa+kl+vdp+nfkll ++l+v+La+++p+eftp+v+a+ldk++a+v+++l++kY HBA2_GALCR 2 LSPTDKSNVKAAWEKVgaHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSTQVKGHGKKVADALTNAVLHVDDMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKY 140 - 6899************77789************************.**9.....******************************************************************************************9 PP + 799*************77789************************.**9.....******************************************************************************************* PP >> HBA_FRAPO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.5 0.4 3.3e-60 3.3e-60 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 195.7 0.4 7.8e-61 7.8e-61 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 193.5 bits; conditional E-value: 3.3e-60 + == domain 1 score: 195.7 bits; conditional E-value: 7.8e-61 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k++vk ++gk+ +a+++GaeaLer++++yP+tk+yF++F dls +gsa+vk+hgkkv++al ea +++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l+av n+l+akY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k++vk ++gk+ +a+++GaeaLer++++yP+tk+yF++F dls +gsa+vk+hGkkv++al ea +++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l+av n+l+akY HBA_FRAPO 2 LSAADKNNVKGIFGKIssHAEDYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQVKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKY 140 - 699*************77799************************.**9.....******************************************************************************************9 PP + 79**************87799************************.**9.....******************************************************************************************* PP >> HBA_PHACO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.5 0.4 3.4e-60 3.4e-60 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 195.6 0.4 8e-61 8e-61 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.5 bits; conditional E-value: 3.4e-60 + == domain 1 score: 195.6 bits; conditional E-value: 8e-61 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k++vk +++k+ +a+e+GaeaLer++++yP+tk+yF++F dls +gsa++k+hgkkv++al eav+++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l+av ++l+akY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k++vk +++k+ +a+e+GaeaLer++++yP+tk+yF++F dls +gsa++k+hGkkv++al eav+++dd++g+l+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+++tpev+a+ldk+l+av ++l+akY HBA_PHACO 2 LSAADKNNVKGIFTKIagHAEEYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQIKGHGKKVVAALIEAVNHIDDITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKY 140 - 699*************8889*************************.**9.....******************************************************************************************9 PP + 79**************8889*************************.**9.....******************************************************************************************* PP >> HBA2_BOSMU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 193.4 0.3 3.5e-60 3.5e-60 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 195.6 0.4 8.3e-61 8.3e-61 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 193.4 bits; conditional E-value: 3.5e-60 + == domain 1 score: 195.6 bits; conditional E-value: 8.3e-61 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k +vka+wgkv +a e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hg+kv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls+ l+v+La+++p++ftp+v+a+ldk+la+v+++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k +vka+wgkv +a e+GaeaLer++ ++P+tk+yF++F dls +gsa+vk+hG+kv++al++av +lddl gal++Ls+lHa+kl+vdp+nfklls+ l+v+La+++p++ftp+v+a+ldk+la+v+++l++kY HBA2_BOSMU 2 LSAADKGNVKAAWGKVggHAAEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGAKVAAALTKAVGHLDDLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKY 140 - 699*************88899************************.**9.....******************************************************************************************9 PP + 79**************88899************************.**9.....******************************************************************************************* PP >> HBA_ERIEU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.8 0.1 1.1e-59 1.1e-59 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 193.9 0.1 2.7e-60 2.7e-60 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 191.8 bits; conditional E-value: 1.1e-59 + == domain 1 score: 193.9 bits; conditional E-value: 2.7e-60 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++ka+vk+ wgk+ + +e+G+eaL r+++ +P+tk+yF++F dl+ gsa+vk+hgkkv++al++av++ldd+ gal++Ls+lHa+kl+vdp+nfklls++l+v+La ++p++ftp+v+a+ldk+la+va++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++ka+vk+ wgk+ + +e+G+eaL r+++ +P+tk+yF++F dl+ gsa+vk+hGkkv++al++av++ldd+ gal++Ls+lHa+kl+vdp+nfklls++l+v+La ++p++ftp+v+a+ldk+la+va++l++kY HBA_ERIEU 2 LSATDKANVKTFWGKLggHGGEYGGEALDRMFQAHPTTKTYFPHF-DLN-----PGSAQVKGHGKKVADALTTAVNNLDDVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKY 140 - 699*************77789************************.998.....9*****************************************************************************************9 PP + 79**************77789************************.998.....9****************************************************************************************** PP >> HBA_PROLO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.4 0.0 1.5e-59 1.5e-59 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 193.5 0.0 3.6e-60 3.6e-60 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.4 bits; conditional E-value: 1.5e-59 + == domain 1 score: 193.5 bits; conditional E-value: 3.6e-60 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++ka++ka w+k+ +a+e+G+eaLer + ++P+tk+yF++F dls gsa+vkahgkkv++al+ av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk++++v+++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++ka++ka w+k+ +a+e+G+eaLer + ++P+tk+yF++F dls gsa+vkahGkkv++al+ av +lddl gal++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v+a+ldk++++v+++l++kY HBA_PROLO 2 LSPADKANIKATWDKIggHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTLAVGHLDDLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKY 140 - 6899************8889*************************.**9.....9*****************************************************************************************9 PP + 799*************8889*************************.**9.....9****************************************************************************************** PP >> HBA_ANSSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.1 0.4 1.8e-59 1.8e-59 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 193.2 0.4 4.3e-60 4.3e-60 4 146 .. 2 140 .. 1 141 [] 0.99 Alignments for each domain: - == domain 1 score: 191.1 bits; conditional E-value: 1.8e-59 + == domain 1 score: 193.2 bits; conditional E-value: 4.3e-60 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k +vk+v+gk+ +a+e+Gae+L+r+++++P+tk+yF++F dl+ gsa++kahgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfk+l+++++vvLa ++p+ +tpev+a++dk+l+ava++l+akY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k +vk+v+gk+ +a+e+Gae+L+r+++++P+tk+yF++F dl+ gsa++kahGkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfk+l+++++vvLa ++p+ +tpev+a++dk+l+ava++l+akY HBA_ANSSE 2 LSAADKGNVKTVFGKIggHAEEYGAETLQRMFQTFPQTKTYFPHF-DLQ-----PGSAQIKAHGKKVAAALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKY 140 - 699*************8889*************************.998.....9*****************************************************************************************9 PP + 79**************8889*************************.998.....9****************************************************************************************** PP >> HBA_PAGLA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 191.1 0.5 1.9e-59 1.9e-59 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 193.2 0.5 4.5e-60 4.5e-60 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 191.1 bits; conditional E-value: 1.9e-59 + == domain 1 score: 193.2 bits; conditional E-value: 4.5e-60 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+++k+++ka w+k+ +a+e+GaeaLer ++++P+tk+yF++F dls +gsa+vkahgkkv++al+ av +l+dl +al++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v++aldk+++av+++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+++k+++ka w+k+ +a+e+GaeaLer ++++P+tk+yF++F dls +gsa+vkahGkkv++al+ av +l+dl +al++Ls+lHa+kl+vdp+nfklls++l+v+La+++p+eftp+v++aldk+++av+++l++kY HBA_PAGLA 2 LSSADKNNIKATWDKIgsHAGEYGAEALERTFISFPTTKTYFPHF-DLS-----HGSAQVKAHGKKVADALTLAVGHLEDLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKY 140 - 6899************87799************************.**9.....******************************************************************************************9 PP + 799*************87799************************.**9.....******************************************************************************************* PP >> HBA_TRIOC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 188.4 0.5 1.2e-58 1.2e-58 1 143 [] 2 140 .. 2 140 .. 0.99 + 1 ! 190.5 0.5 2.9e-59 2.9e-59 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 188.4 bits; conditional E-value: 1.2e-58 + == domain 1 score: 190.5 bits; conditional E-value: 2.9e-59 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k++vk+v++k+ +a+++Gae+Ler++++yP tk+yF++F dl +gsa++kahgkkv+ al eav+++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+ +tpev+a+ldk+l+av n+l+akY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k++vk+v++k+ +a+++Gae+Ler++++yP tk+yF++F dl +gsa++kahGkkv+ al eav+++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a ++p+ +tpev+a+ldk+l+av n+l+akY HBA_TRIOC 2 LSANDKTNVKTVFTKItgHAEDYGAETLERMFITYPPTKTYFPHF-DLH-----HGSAQIKAHGKKVVGALIEAVNHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKY 140 - 699*************8889*************************.996.....******************************************************************************************9 PP + 89**************8889*************************.996.....******************************************************************************************* PP >> HBAD_CHLME # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 187.1 0.6 3.2e-58 3.2e-58 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 189.3 0.5 7e-59 7e-59 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 187.1 bits; conditional E-value: 3.2e-58 + == domain 1 score: 189.3 bits; conditional E-value: 7e-59 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+a++k+l++++w+kv +++e+G+eaL+r++ +yP+tk+yF++F dl gs++v++hgkkv++alg+avk+ld+l++al++Ls+lHa++l+vdp nfkll++++ vvLa++++k+++pe++aa+dk+l+ava++la+kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + l+a++k+l++++w+kv +++e+G+eaL+r++ +yP+tk+yF++F dl gs++v++hGkkv++alg+avk+ld+l++al++Ls+lHa++l+vdp nfkll++++ vvLa++++k+++pe++aa+dk+l+ava++la+kY HBAD_CHLME 2 LTADDKKLLTQLWEKVagHQEEFGSEALQRMFLTYPQTKTYFPHF-DLH-----PGSEQVRGHGKKVAAALGNAVKSLDNLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKY 140 - 799*************8889*************************.996.....9*****************************************************************************************9 PP + 89**************8889*************************.996.....9****************************************************************************************** PP >> HBAZ_HORSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 186.9 0.1 3.8e-58 3.8e-58 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 189.1 0.1 8.2e-59 8.2e-59 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 186.9 bits; conditional E-value: 3.8e-58 + == domain 1 score: 189.1 bits; conditional E-value: 8.2e-59 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+++e+++v ++wgk+ +ad+vG+eaL+rl+ +yP+tk+yF++F dl +gs++++ahg+kv++a+g+avk++d+++galakLselHa+ l+vdp+nfk+ls++l+v+La+++p++ft++++aa+dk+l+ v+++l++kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + l+++e+++v ++wgk+ +ad+vG+eaL+rl+ +yP+tk+yF++F dl +gs++++ahG+kv++a+g+avk++d+++galakLselHa+ l+vdp+nfk+ls++l+v+La+++p++ft++++aa+dk+l+ v+++l++kY HBAZ_HORSE 2 LTKAERTMVVSIWGKIsmQADAVGTEALQRLFSSYPQTKTYFPHF-DLH-----EGSPQLRAHGSKVAAAVGDAVKSIDNVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKY 140 - 6899************66689************************.996.....9*****************************************************************************************9 PP + 899*************66689************************.996.....9****************************************************************************************** PP >> HBA_COLLI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 185.9 0.2 7.4e-58 7.4e-58 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 188.0 0.2 1.8e-58 1.8e-58 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 185.9 bits; conditional E-value: 7.4e-58 + == domain 1 score: 188.0 bits; conditional E-value: 1.8e-58 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++k++vkav+ k+ +a+++G+eaLerl+++yP+tk+yF++F dls +gsa++k+hgkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a +fp+ +tpev+a+ldk++ av ++l+akY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++k++vkav+ k+ +a+++G+eaLerl+++yP+tk+yF++F dls +gsa++k+hGkkv++al ea +++dd++gal+kLs+lHa+kl+vdp+nfkll+++++vv+a +fp+ +tpev+a+ldk++ av ++l+akY HBA_COLLI 2 LSANDKSNVKAVFAKIggQAGDLGGEALERLFITYPQTKTYFPHF-DLS-----HGSAQIKGHGKKVAEALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 - 699*************77789************************.**9.....******************************************************************************************9 PP + 89**************77789************************.**9.....******************************************************************************************* PP >> HBAD_PASMO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 185.5 0.1 9.9e-58 9.9e-58 1 143 [] 2 140 .. 2 140 .. 0.98 + 1 ! 187.7 0.1 2.2e-58 2.2e-58 4 146 .. 2 140 .. 1 141 [] 0.98 Alignments for each domain: - == domain 1 score: 185.5 bits; conditional E-value: 9.9e-58 + == domain 1 score: 187.7 bits; conditional E-value: 2.2e-58 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+ae+k+l++++wgk+ ++e+Ga+aL r++++yP+tk+yF++F dls +gs+++++hgkkv++al++a+k+ld+l++al++Ls+lHa++l+vdp+nfk+ls++l v La++++ke++pev++a+dk+++ava++la+kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + l+ae+k+l++++wgk+ ++e+Ga+aL r++++yP+tk+yF++F dls +gs+++++hGkkv++al++a+k+ld+l++al++Ls+lHa++l+vdp+nfk+ls++l v La++++ke++pev++a+dk+++ava++la+kY HBAD_PASMO 2 LTAEDKKLIQQIWGKLggAEEEIGADALWRMFHSYPSTKTYFPHF-DLS-----QGSDQIRGHGKKVVAALSNAIKNLDNLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKY 140 - 79**************65478************************.**9.....9*****************************************************************************************9 PP + 89**************65478************************.**9.....9****************************************************************************************** PP + +>> MYG_SAISC + # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc + --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- + 1 ! 183.9 1.0 3.2e-57 3.2e-57 4 146 .. 2 146 .. 1 147 [. 0.98 + + Alignments for each domain: + == domain 1 score: 183.9 bits; conditional E-value: 3.2e-57 + xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+ e++lv ++wgkvead ++G+e+L+ l++ +Pet ++FdkFk+l+sed++k+s+++k+hG++vltalg ++kk+++++++l++L+++Hatk+k+++++++l+s+++v+vL++k+p++f++++q a++k+l++++n++aakY + MYG_SAISC 2 LSDGEWQLVLNIWGKVEADipSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKY 146 + 7889************9998899************************************************************************************************************************** PP >> MYG_LYCPI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 181.9 1.9 1.3e-56 1.3e-56 1 143 [] 2 146 .. 2 146 .. 0.97 + 1 ! 183.9 1.9 3.3e-57 3.3e-57 4 146 .. 2 146 .. 1 147 [. 0.97 Alignments for each domain: - == domain 1 score: 181.9 bits; conditional E-value: 1.3e-56 + == domain 1 score: 183.9 bits; conditional E-value: 3.3e-57 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ e++ v ++wgkve+d +G +e+L+rl++++Pet ++FdkFk+l++ed++kgs+++k+hg++vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++k++++f+++++aa++k+l++++n++aakY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+ e++ v ++wgkve+d +G +e+L+rl++++Pet ++FdkFk+l++ed++kgs+++k+hG++vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++k++++f+++++aa++k+l++++n++aakY MYG_LYCPI 2 LSDGEWQIVLNIWGKVETDLAGhgQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKY 146 - 57889***********99966444************************************************************************************************************************9 PP - ->> MYG_SAISC + 7889************99966444************************************************************************************************************************* PP + +>> MYG_PROGU # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 181.9 1.1 1.3e-56 1.3e-56 1 143 [] 2 146 .. 2 146 .. 0.98 + 1 ! 182.4 0.2 9.2e-57 9.2e-57 4 146 .. 2 146 .. 1 147 [. 0.97 Alignments for each domain: - == domain 1 score: 181.9 bits; conditional E-value: 1.3e-56 + == domain 1 score: 182.4 bits; conditional E-value: 9.2e-57 xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ e++lv ++wgkvead ++G+e+L+ l++ +Pet ++FdkFk+l+sed++k+s+++k+hg++vltalg ++kk+++++++l++L+++Hatk+k+++++++l+s+++v+vL++k+p++f++++q a++k+l++++n++aakY - MYG_SAISC 2 LSDGEWQLVLNIWGKVEADipSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKKKGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKY 146 - 57889***********9998899*************************************************************************************************************************9 PP + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+ e++lv +vwgkve d +G+e+L+rl++ +Pet ++FdkFk+l++ed++++s+++k+hG++vltalg ++kk+++++++la+L+++Hatk+k+++++++++se++++vL++k+p++f++++q a++k+l++++n++aakY + MYG_PROGU 2 LSDGEWQLVLNVWGKVEGDlsGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKY 146 + 7889************98833557************************************************************************************************************************* PP >> MYG_ESCGI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 180.8 1.7 2.8e-56 2.8e-56 1 143 [] 2 146 .. 2 146 .. 0.97 + 1 ! 182.4 2.3 9.7e-57 9.7e-57 4 146 .. 2 146 .. 1 147 [. 0.97 Alignments for each domain: - == domain 1 score: 180.8 bits; conditional E-value: 2.8e-56 + == domain 1 score: 182.4 bits; conditional E-value: 9.7e-57 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls++e++lv ++w kvead +G +++L+rl++ +Pet ++FdkFk+l++e+++k+s+++k+hg++vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++++p++f++++qaa++k+l+++++++aakY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls++e++lv ++w kvead +G +++L+rl++ +Pet ++FdkFk+l++e+++k+s+++k+hG++vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++++p++f++++qaa++k+l+++++++aakY MYG_ESCGI 2 LSDAEWQLVLNIWAKVEADVAGhgQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKY 146 - 6899************99966444************************************************************************************************************************9 PP - ->> MYG_PROGU - # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc - --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 180.4 0.2 3.6e-56 3.6e-56 1 143 [] 2 146 .. 2 146 .. 0.97 - - Alignments for each domain: - == domain 1 score: 180.4 bits; conditional E-value: 3.6e-56 - xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ e++lv +vwgkve d +G+e+L+rl++ +Pet ++FdkFk+l++ed++++s+++k+hg++vltalg ++kk+++++++la+L+++Hatk+k+++++++++se++++vL++k+p++f++++q a++k+l++++n++aakY - MYG_PROGU 2 LSDGEWQLVLNVWGKVEGDlsGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKKKGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKY 146 - 57889***********98833557************************************************************************************************************************9 PP + 7999************99966444************************************************************************************************************************* PP >> MYG_HORSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 178.9 1.0 1.1e-55 1.1e-55 1 143 [] 2 146 .. 2 146 .. 0.97 + 1 ! 180.9 1.0 2.7e-56 2.7e-56 4 146 .. 2 146 .. 1 147 [. 0.97 Alignments for each domain: - == domain 1 score: 178.9 bits; conditional E-value: 1.1e-55 + == domain 1 score: 180.9 bits; conditional E-value: 2.7e-56 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ e+++v +vwgkvead +G +e+L+rl++ +Pet ++FdkFk+l++e+++k+s+++k+hg+ vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++k+p++f++++q a++k+l++++n++aakY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+ e+++v +vwgkvead +G +e+L+rl++ +Pet ++FdkFk+l++e+++k+s+++k+hG+ vltalg ++kk+++++++l++L+++Hatk+k+++++++++s+++++vL++k+p++f++++q a++k+l++++n++aakY MYG_HORSE 2 LSDGEWQQVLNVWGKVEADIAGhgQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKY 146 - 57889***********99965444************************************************************************************************************************9 PP + 7889************99965444************************************************************************************************************************* PP >> MYG_MOUSE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 178.0 0.3 2e-55 2e-55 1 143 [] 2 146 .. 2 146 .. 0.97 + 1 ! 180.0 0.3 5.2e-56 5.2e-56 4 146 .. 2 146 .. 1 147 [. 0.97 Alignments for each domain: - == domain 1 score: 178.0 bits; conditional E-value: 2e-55 + == domain 1 score: 180.0 bits; conditional E-value: 5.2e-56 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - ls+ e++lv +vwgkvead +G +e+L+ l++++Pet ++FdkFk+l+se+++kgs+++k+hg +vltalg+++kk++++++++++L+++Hatk+k+++++++++se+++ vL+++++++f++++q a++k+l++++n++aakY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkveadevG..aeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + ls+ e++lv +vwgkvead +G +e+L+ l++++Pet ++FdkFk+l+se+++kgs+++k+hG +vltalg+++kk++++++++++L+++Hatk+k+++++++++se+++ vL+++++++f++++q a++k+l++++n++aakY MYG_MOUSE 2 LSDGEWQLVLNVWGKVEADLAGhgQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKY 146 - 57889************9976544************************************************************************************************************************9 PP + 7889*************9976544************************************************************************************************************************* PP >> HBA4_SALIR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 177.1 0.1 3.8e-55 3.8e-55 1 143 [] 2 141 .. 2 141 .. 0.98 + 1 ! 179.3 0.1 8.3e-56 8.3e-56 4 146 .. 2 141 .. 1 142 [] 0.98 Alignments for each domain: - == domain 1 score: 177.1 bits; conditional E-value: 3.8e-55 + == domain 1 score: 179.3 bits; conditional E-value: 8.3e-56 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - lsa++ka+vka+wgk+ ++de+G++aL+r+lvvyP+tk yF+++++++ gsa vk+hg +++++++++v ++ddl g l+kLselHatkl+vdp+nfk+l++ l+vv+aa fp+eftpe++ ++dk+l+++a ala+kY + sp|P02024|HBB_GORGO-i1 4 lsaeekalvkavwgkv..eadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + lsa++ka+vka+wgk+ ++de+G++aL+r+lvvyP+tk yF+++++++ gsa vk+hG +++++++++v ++ddl g l+kLselHatkl+vdp+nfk+l++ l+vv+aa fp+eftpe++ ++dk+l+++a ala+kY HBA4_SALIR 2 LSAKDKANVKAIWGKIlpKSDEIGEQALSRMLVVYPQTKAYFSHWASVA-----PGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKY 141 - 699*************999**************************7765.....9*****************************************************************************************9 PP + 89**************999**************************7765.....9****************************************************************************************** PP >> HBB2_TRICR # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 171.6 0.0 2e-53 2e-53 1 143 [] 3 145 .] 3 145 .] 0.99 + 1 ! 177.5 0.0 3e-55 3e-55 2 146 .. 1 145 [] 1 145 [] 1.00 Alignments for each domain: - == domain 1 score: 171.6 bits; conditional E-value: 2e-53 - xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 1 lsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 - l+ae++++++a++gkv++d++G+++L+rl+vv P+++ryF++F+dlss+da+++++kv ahg+kv++++ ea k+ld+l++ +a+Ls +H+ k+ vdpenfkl+s +++v+La +++++f+++ q a++kl+++v++al++ Y - HBB2_TRICR 3 LTAEDRKEIAAILGKVNVDSLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 - 79*******************************************************************************************************************************************99 PP + == domain 1 score: 177.5 bits; conditional E-value: 3e-55 + xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF + sp|P02024|HBB_GORGO-i1 2 vhlsaeekalvkavwgkveadevGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 + vhl+ae++++++a++gkv++d++G+++L+rl+vv P+++ryF++F+dlss+da+++++kv ahG+kv++++ ea k+ld+l++ +a+Ls +H+ k+ vdpenfkl+s +++v+La +++++f+++ q a++kl+++v++al++ Y + HBB2_TRICR 1 VHLTAEDRKEIAAILGKVNVDSLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLDNLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY 145 + 8**********************************************************************************************************************************************99 PP >> MYG_MUSAN # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- - 1 ! 143.2 0.3 1.1e-44 1.1e-44 5 143 .] 2 141 .. 1 141 [. 0.96 + 1 ! 144.3 0.3 5.1e-45 5.1e-45 8 146 .. 2 141 .. 1 142 [. 0.96 Alignments for each domain: - == domain 1 score: 143.2 bits; conditional E-value: 1.1e-44 + == domain 1 score: 144.3 bits; conditional E-value: 5.1e-45 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF - sp|P02024|HBB_GORGO-i1 5 ekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahgkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 143 + sp|P02024|HBB_GORGO-i1 8 ekalvkavwgkvead..evGaeaLerllvvyPetkryFdkFkdlssedavkgsakvkahGkkvltalgeavkklddlkgalakLselHatklkvdpenfkllsevlvvvLaakfpkeftpevqaaldkllaavanalaakY 146 ++++v++vw+ ve+d ++G+++L rl+++yPe++++F+kFk++s ++k++a++ka++++vl+alg++vkk++++++ +++L+++H+t++k++p++f+ ++++ v vL++++p+e++++vqaa++ +++ + +++ ++Y MYG_MUSAN 2 DWEKVNSVWSAVESDltAIGQNILLRLFEQYPESQNHFPKFKNKS-LGELKDTADIKAQADTVLSALGNIVKKKGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEY 141 - 7899********9886689**********************9998.667*************************************************************************************9999888 PP + 7899********9886689**********************9998.667****************************************************************************************9999 PP Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (143 nodes) -Target sequences: 45 (6519 residues searched) +Query model(s): 1 (147 nodes) +Target sequences: 45 (6519 residues searched) Passed MSV filter: 45 (1); expected 0.9 (0.02) Passed bias filter: 45 (1); expected 0.9 (0.02) Passed Vit filter: 45 (1); expected 0.0 (0.001) Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.34u 0.01s 00:00:00.35 Elapsed: 00:00:01.00 -# Mc/sec: 0.93 +# CPU time: 0.17u 0.00s 00:00:00.17 Elapsed: 00:00:00.17 +# Mc/sec: 5.33 @@ New targets included: 0 @@ New alignment includes: 46 subseqs (was 46), including original query diff -r 7ea31fc35394 -r d0875d3f6544 test-data/jackhmmer.tblout --- a/test-data/jackhmmer.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/jackhmmer.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,103 +1,103 @@ # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- -HBB_MANSP - sp|P02185|MYG_PHYCD - 7.7e-69 221.6 0.1 8.6e-69 221.5 0.1 1.0 1 0 0 1 1 1 1 - -HBB_URSMA - sp|P02185|MYG_PHYCD - 4.1e-68 219.3 0.2 4.5e-68 219.1 0.2 1.0 1 0 0 1 1 1 1 - -HBB_RABIT - sp|P02185|MYG_PHYCD - 5.6e-67 215.6 0.5 6.3e-67 215.4 0.5 1.0 1 0 0 1 1 1 1 - -HBB_CALAR - sp|P02185|MYG_PHYCD - 1.5e-66 214.2 0.1 1.7e-66 214.0 0.1 1.0 1 0 0 1 1 1 1 - -HBB_TACAC - sp|P02185|MYG_PHYCD - 5e-66 212.5 0.3 5.6e-66 212.4 0.3 1.0 1 0 0 1 1 1 1 - -HBB_COLLI - sp|P02185|MYG_PHYCD - 5.2e-66 212.5 0.0 5.7e-66 212.3 0.0 1.0 1 0 0 1 1 1 1 - -HBE_PONPY - sp|P02185|MYG_PHYCD - 6.6e-66 212.1 0.2 7.4e-66 212.0 0.2 1.0 1 0 0 1 1 1 1 - -HBB_SUNMU - sp|P02185|MYG_PHYCD - 7.2e-66 212.0 0.1 8e-66 211.9 0.1 1.0 1 0 0 1 1 1 1 - -HBB_ORNAN - sp|P02185|MYG_PHYCD - 1e-65 211.5 0.0 1.2e-65 211.3 0.0 1.0 1 0 0 1 1 1 1 - -HBB_SPETO - sp|P02185|MYG_PHYCD - 1.5e-65 211.0 0.4 1.7e-65 210.8 0.4 1.0 1 0 0 1 1 1 1 - -HBB_EQUHE - sp|P02185|MYG_PHYCD - 1.6e-65 210.9 0.2 1.8e-65 210.7 0.2 1.0 1 0 0 1 1 1 1 - -HBB_SPECI - sp|P02185|MYG_PHYCD - 2.3e-65 210.4 0.9 2.5e-65 210.2 0.9 1.0 1 0 0 1 1 1 1 - -HBB_LARRI - sp|P02185|MYG_PHYCD - 3e-65 210.0 0.0 3.4e-65 209.8 0.0 1.0 1 0 0 1 1 1 1 - -HBB_TRIIN - sp|P02185|MYG_PHYCD - 8e-65 208.6 0.1 8.9e-65 208.5 0.1 1.0 1 0 0 1 1 1 1 - -HBB_TUPGL - sp|P02185|MYG_PHYCD - 1.2e-62 201.6 0.0 1.3e-62 201.5 0.0 1.0 1 0 0 1 1 1 1 - -HBA_MESAU - sp|P02185|MYG_PHYCD - 1.5e-61 198.0 0.6 1.7e-61 197.8 0.6 1.0 1 0 0 1 1 1 1 - -HBB1_VAREX - sp|P02185|MYG_PHYCD - 3e-61 197.0 0.1 3.4e-61 196.9 0.1 1.0 1 0 0 1 1 1 1 - -HBA_MACFA - sp|P02185|MYG_PHYCD - 6e-61 196.1 1.1 6.6e-61 195.9 1.1 1.0 1 0 0 1 1 1 1 - -HBA_MACSI - sp|P02185|MYG_PHYCD - 9.7e-61 195.4 1.0 1.1e-60 195.2 1.0 1.0 1 0 0 1 1 1 1 - -HBA2_BOSMU - sp|P02185|MYG_PHYCD - 3.2e-60 193.7 0.9 3.6e-60 193.6 0.9 1.0 1 0 0 1 1 1 1 - -HBA_PONPY - sp|P02185|MYG_PHYCD - 3.2e-60 193.7 2.0 3.6e-60 193.5 2.0 1.0 1 0 0 1 1 1 1 - -HBA2_GALCR - sp|P02185|MYG_PHYCD - 4.2e-60 193.3 1.5 4.7e-60 193.2 1.5 1.0 1 0 0 1 1 1 1 - -HBA_AILME - sp|P02185|MYG_PHYCD - 5.7e-60 192.9 0.5 6.3e-60 192.7 0.5 1.0 1 0 0 1 1 1 1 - -HBA_FRAPO - sp|P02185|MYG_PHYCD - 9.6e-60 192.2 0.6 1.1e-59 192.0 0.6 1.0 1 0 0 1 1 1 1 - -HBA_ANSSE - sp|P02185|MYG_PHYCD - 1e-59 192.1 0.9 1.1e-59 191.9 0.9 1.0 1 0 0 1 1 1 1 - -HBA_PHACO - sp|P02185|MYG_PHYCD - 2.2e-59 191.0 0.6 2.4e-59 190.9 0.6 1.0 1 0 0 1 1 1 1 - -HBA_PROLO - sp|P02185|MYG_PHYCD - 2.4e-59 190.9 0.2 2.6e-59 190.7 0.2 1.0 1 0 0 1 1 1 1 - -HBA_ERIEU - sp|P02185|MYG_PHYCD - 4e-59 190.1 0.3 4.5e-59 190.0 0.3 1.0 1 0 0 1 1 1 1 - -HBA_PAGLA - sp|P02185|MYG_PHYCD - 4.2e-59 190.1 0.9 4.7e-59 189.9 0.9 1.0 1 0 0 1 1 1 1 - -HBA_TRIOC - sp|P02185|MYG_PHYCD - 1.6e-58 188.2 0.6 1.8e-58 188.0 0.6 1.0 1 0 0 1 1 1 1 - -HBAD_CHLME - sp|P02185|MYG_PHYCD - 3.9e-58 186.9 0.9 4.3e-58 186.8 0.9 1.0 1 0 0 1 1 1 1 - -HBA_COLLI - sp|P02185|MYG_PHYCD - 3.5e-57 183.8 0.4 3.9e-57 183.7 0.4 1.0 1 0 0 1 1 1 1 - -HBBL_RANCA - sp|P02185|MYG_PHYCD - 5.8e-57 183.1 0.2 6.5e-57 183.0 0.2 1.0 1 0 0 1 1 1 1 - -HBAD_PASMO - sp|P02185|MYG_PHYCD - 6.3e-56 179.8 0.1 7e-56 179.6 0.1 1.0 1 0 0 1 1 1 1 - -HBAZ_HORSE - sp|P02185|MYG_PHYCD - 9.4e-56 179.2 0.1 1e-55 179.1 0.1 1.0 1 0 0 1 1 1 1 - -HBB2_XENTR - sp|P02185|MYG_PHYCD - 4e-55 177.2 0.7 4.4e-55 177.0 0.7 1.0 1 0 0 1 1 1 1 - -MYG_PROGU - sp|P02185|MYG_PHYCD - 9.5e-55 176.0 1.6 1.1e-54 175.8 1.6 1.0 1 0 0 1 1 1 1 - -MYG_LYCPI - sp|P02185|MYG_PHYCD - 2.6e-54 174.6 5.3 2.9e-54 174.4 5.3 1.0 1 0 0 1 1 1 1 - -MYG_MOUSE - sp|P02185|MYG_PHYCD - 1.1e-53 172.5 1.6 1.2e-53 172.4 1.6 1.0 1 0 0 1 1 1 1 - -MYG_SAISC - sp|P02185|MYG_PHYCD - 1.2e-53 172.4 4.3 1.4e-53 172.2 4.3 1.0 1 0 0 1 1 1 1 - -MYG_HORSE - sp|P02185|MYG_PHYCD - 1.5e-53 172.1 4.2 1.7e-53 171.9 4.2 1.0 1 0 0 1 1 1 1 - -MYG_ESCGI - sp|P02185|MYG_PHYCD - 5e-53 170.4 5.7 5.6e-53 170.2 5.7 1.0 1 0 0 1 1 1 1 - -HBA4_SALIR - sp|P02185|MYG_PHYCD - 3.8e-52 167.5 0.1 4.2e-52 167.4 0.1 1.0 1 0 0 1 1 1 1 - -HBB2_TRICR - sp|P02185|MYG_PHYCD - 5.2e-50 160.6 0.0 5.8e-50 160.5 0.0 1.0 1 0 0 1 1 1 1 - -MYG_MUSAN - sp|P02185|MYG_PHYCD - 2.1e-45 145.7 0.4 2.3e-45 145.5 0.4 1.0 1 0 0 1 1 1 1 - -HBB_MANSP - sp|P02024|HBB_GORGO - 1.4e-71 230.4 0.0 1.5e-71 230.3 0.0 1.0 1 0 0 1 1 1 1 - -HBB_URSMA - sp|P02024|HBB_GORGO - 5.9e-71 228.4 0.1 6.6e-71 228.2 0.1 1.0 1 0 0 1 1 1 1 - -HBB_RABIT - sp|P02024|HBB_GORGO - 5.8e-70 225.2 0.3 6.4e-70 225.0 0.3 1.0 1 0 0 1 1 1 1 - -HBB_SUNMU - sp|P02024|HBB_GORGO - 2e-69 223.4 0.0 2.2e-69 223.3 0.0 1.0 1 0 0 1 1 1 1 - -HBB_CALAR - sp|P02024|HBB_GORGO - 2.4e-69 223.1 0.1 2.7e-69 223.0 0.1 1.0 1 0 0 1 1 1 1 - -HBB_EQUHE - sp|P02024|HBB_GORGO - 3.4e-69 222.7 0.1 3.8e-69 222.5 0.1 1.0 1 0 0 1 1 1 1 - -HBB_COLLI - sp|P02024|HBB_GORGO - 4.2e-69 222.4 0.0 4.7e-69 222.2 0.0 1.0 1 0 0 1 1 1 1 - -HBB_TACAC - sp|P02024|HBB_GORGO - 7.3e-69 221.6 0.1 8.1e-69 221.4 0.1 1.0 1 0 0 1 1 1 1 - -HBE_PONPY - sp|P02024|HBB_GORGO - 1.3e-68 220.8 0.1 1.5e-68 220.6 0.1 1.0 1 0 0 1 1 1 1 - -HBB_SPECI - sp|P02024|HBB_GORGO - 3e-68 219.6 0.4 3.3e-68 219.5 0.4 1.0 1 0 0 1 1 1 1 - -HBB_SPETO - sp|P02024|HBB_GORGO - 5.3e-68 218.8 0.2 5.9e-68 218.7 0.2 1.0 1 0 0 1 1 1 1 - -HBB_ORNAN - sp|P02024|HBB_GORGO - 1.3e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 0 0 1 1 1 1 - -HBB_TRIIN - sp|P02024|HBB_GORGO - 1.4e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 0 0 1 1 1 1 - -HBB_LARRI - sp|P02024|HBB_GORGO - 2.5e-67 216.6 0.0 2.8e-67 216.5 0.0 1.0 1 0 0 1 1 1 1 - -HBB_TUPGL - sp|P02024|HBB_GORGO - 6.5e-66 212.0 0.0 7.2e-66 211.9 0.0 1.0 1 0 0 1 1 1 1 - -HBB1_VAREX - sp|P02024|HBB_GORGO - 6e-65 208.9 0.0 6.6e-65 208.8 0.0 1.0 1 0 0 1 1 1 1 - -HBA_MESAU - sp|P02024|HBB_GORGO - 1.9e-62 200.8 0.3 2.1e-62 200.6 0.3 1.0 1 0 0 1 1 1 1 - -HBA_PONPY - sp|P02024|HBB_GORGO - 1.9e-61 197.6 0.7 2.1e-61 197.4 0.7 1.0 1 0 0 1 1 1 1 - -HBBL_RANCA - sp|P02024|HBB_GORGO - 2.7e-61 197.0 0.1 3.1e-61 196.9 0.1 1.0 1 0 0 1 1 1 1 - -HBA_MACFA - sp|P02024|HBB_GORGO - 3.6e-61 196.6 0.3 4.1e-61 196.5 0.3 1.0 1 0 0 1 1 1 1 - -HBA_MACSI - sp|P02024|HBB_GORGO - 5.2e-61 196.1 0.2 5.8e-61 196.0 0.2 1.0 1 0 0 1 1 1 1 - -HBA_AILME - sp|P02024|HBB_GORGO - 9e-61 195.4 0.1 1e-60 195.2 0.1 1.0 1 0 0 1 1 1 1 - -HBB2_XENTR - sp|P02024|HBB_GORGO - 1.6e-60 194.6 0.4 1.8e-60 194.4 0.4 1.0 1 0 0 1 1 1 1 - -HBA2_GALCR - sp|P02024|HBB_GORGO - 2.7e-60 193.8 0.5 3e-60 193.7 0.5 1.0 1 0 0 1 1 1 1 - -HBA_FRAPO - sp|P02024|HBB_GORGO - 3e-60 193.7 0.4 3.3e-60 193.5 0.4 1.0 1 0 0 1 1 1 1 - -HBA_PHACO - sp|P02024|HBB_GORGO - 3e-60 193.7 0.4 3.4e-60 193.5 0.4 1.0 1 0 0 1 1 1 1 - -HBA2_BOSMU - sp|P02024|HBB_GORGO - 3.2e-60 193.6 0.3 3.5e-60 193.4 0.3 1.0 1 0 0 1 1 1 1 - -HBA_ERIEU - sp|P02024|HBB_GORGO - 1e-59 191.9 0.1 1.1e-59 191.8 0.1 1.0 1 0 0 1 1 1 1 - -HBA_PROLO - sp|P02024|HBB_GORGO - 1.4e-59 191.5 0.0 1.5e-59 191.4 0.0 1.0 1 0 0 1 1 1 1 - -HBA_ANSSE - sp|P02024|HBB_GORGO - 1.6e-59 191.3 0.4 1.8e-59 191.1 0.4 1.0 1 0 0 1 1 1 1 - -HBA_PAGLA - sp|P02024|HBB_GORGO - 1.7e-59 191.2 0.5 1.9e-59 191.1 0.5 1.0 1 0 0 1 1 1 1 - -HBA_TRIOC - sp|P02024|HBB_GORGO - 1.1e-58 188.6 0.5 1.2e-58 188.4 0.5 1.0 1 0 0 1 1 1 1 - -HBAD_CHLME - sp|P02024|HBB_GORGO - 2.9e-58 187.2 0.6 3.2e-58 187.1 0.6 1.0 1 0 0 1 1 1 1 - -HBAZ_HORSE - sp|P02024|HBB_GORGO - 3.4e-58 187.0 0.1 3.8e-58 186.9 0.1 1.0 1 0 0 1 1 1 1 - -HBA_COLLI - sp|P02024|HBB_GORGO - 6.7e-58 186.1 0.2 7.4e-58 185.9 0.2 1.0 1 0 0 1 1 1 1 - -HBAD_PASMO - sp|P02024|HBB_GORGO - 8.9e-58 185.7 0.1 9.9e-58 185.5 0.1 1.0 1 0 0 1 1 1 1 - -MYG_LYCPI - sp|P02024|HBB_GORGO - 1.1e-56 182.1 1.9 1.3e-56 181.9 1.9 1.0 1 0 0 1 1 1 1 - -MYG_SAISC - sp|P02024|HBB_GORGO - 1.1e-56 182.1 1.1 1.3e-56 181.9 1.1 1.0 1 0 0 1 1 1 1 - -MYG_ESCGI - sp|P02024|HBB_GORGO - 2.5e-56 181.0 1.7 2.8e-56 180.8 1.7 1.0 1 0 0 1 1 1 1 - -MYG_PROGU - sp|P02024|HBB_GORGO - 3.2e-56 180.6 0.2 3.6e-56 180.4 0.2 1.0 1 0 0 1 1 1 1 - -MYG_HORSE - sp|P02024|HBB_GORGO - 9.5e-56 179.1 1.0 1.1e-55 178.9 1.0 1.0 1 0 0 1 1 1 1 - -MYG_MOUSE - sp|P02024|HBB_GORGO - 1.8e-55 178.2 0.3 2e-55 178.0 0.3 1.0 1 0 0 1 1 1 1 - -HBA4_SALIR - sp|P02024|HBB_GORGO - 3.4e-55 177.3 0.1 3.8e-55 177.1 0.1 1.0 1 0 0 1 1 1 1 - -HBB2_TRICR - sp|P02024|HBB_GORGO - 1.8e-53 171.7 0.0 2e-53 171.6 0.0 1.0 1 0 0 1 1 1 1 - -MYG_MUSAN - sp|P02024|HBB_GORGO - 1e-44 143.3 0.3 1.1e-44 143.2 0.3 1.0 1 0 0 1 1 1 1 - +HBB_MANSP - sp|P02185|MYG_PHYCD - 1.5e-69 224.0 0.1 1.7e-69 223.9 0.1 1.0 1 0 0 1 1 1 1 - +HBB_URSMA - sp|P02185|MYG_PHYCD - 4.6e-69 222.5 0.2 5e-69 222.3 0.2 1.0 1 0 0 1 1 1 1 - +HBB_RABIT - sp|P02185|MYG_PHYCD - 2.5e-68 220.1 0.6 2.7e-68 220.0 0.6 1.0 1 0 0 1 1 1 1 - +HBB_SUNMU - sp|P02185|MYG_PHYCD - 7.6e-68 218.5 0.0 8.3e-68 218.4 0.0 1.0 1 0 0 1 1 1 1 - +HBB_COLLI - sp|P02185|MYG_PHYCD - 9.5e-68 218.2 0.0 1.1e-67 217.9 0.0 1.0 1 0 0 1 1 1 1 - +HBB_EQUHE - sp|P02185|MYG_PHYCD - 1.4e-67 217.6 0.1 1.6e-67 217.5 0.1 1.0 1 0 0 1 1 1 1 - +HBB_TACAC - sp|P02185|MYG_PHYCD - 1.5e-67 217.6 0.3 1.6e-67 217.4 0.3 1.0 1 0 0 1 1 1 1 - +HBB_SPECI - sp|P02185|MYG_PHYCD - 3.3e-67 216.5 0.7 3.6e-67 216.3 0.7 1.0 1 0 0 1 1 1 1 - +HBB_CALAR - sp|P02185|MYG_PHYCD - 3.4e-67 216.4 0.1 3.8e-67 216.3 0.1 1.0 1 0 0 1 1 1 1 - +HBB_SPETO - sp|P02185|MYG_PHYCD - 3.7e-67 216.3 0.4 4.1e-67 216.1 0.4 1.0 1 0 0 1 1 1 1 - +HBB_ORNAN - sp|P02185|MYG_PHYCD - 6.6e-67 215.5 0.0 7.2e-67 215.3 0.0 1.0 1 0 0 1 1 1 1 - +HBE_PONPY - sp|P02185|MYG_PHYCD - 8.4e-67 215.1 0.3 9.2e-67 215.0 0.3 1.0 1 0 0 1 1 1 1 - +MYG_ESCGI - sp|P02185|MYG_PHYCD - 2.3e-66 213.7 1.7 2.6e-66 213.5 1.7 1.0 1 0 0 1 1 1 1 - +HBB_TRIIN - sp|P02185|MYG_PHYCD - 2.9e-66 213.4 0.1 3.2e-66 213.2 0.1 1.0 1 0 0 1 1 1 1 - +HBB_LARRI - sp|P02185|MYG_PHYCD - 5.3e-66 212.5 0.0 6.4e-66 212.3 0.0 1.0 1 0 0 1 1 1 1 - +MYG_LYCPI - sp|P02185|MYG_PHYCD - 8.7e-66 211.8 1.6 9.6e-66 211.7 1.6 1.0 1 0 0 1 1 1 1 - +MYG_PROGU - sp|P02185|MYG_PHYCD - 1.8e-65 210.8 0.2 2e-65 210.6 0.2 1.0 1 0 0 1 1 1 1 - +MYG_SAISC - sp|P02185|MYG_PHYCD - 2.5e-65 210.3 0.9 2.8e-65 210.2 0.9 1.0 1 0 0 1 1 1 1 - +MYG_HORSE - sp|P02185|MYG_PHYCD - 2.6e-65 210.3 0.8 2.9e-65 210.1 0.8 1.0 1 0 0 1 1 1 1 - +HBA_MESAU - sp|P02185|MYG_PHYCD - 9.1e-65 208.5 0.2 1e-64 208.4 0.2 1.0 1 0 0 1 1 1 1 - +MYG_MOUSE - sp|P02185|MYG_PHYCD - 1.3e-64 208.0 0.3 1.4e-64 207.9 0.3 1.0 1 0 0 1 1 1 1 - +HBB_TUPGL - sp|P02185|MYG_PHYCD - 1.5e-64 207.8 0.0 1.7e-64 207.6 0.0 1.0 1 0 0 1 1 1 1 - +HBA_PONPY - sp|P02185|MYG_PHYCD - 1.3e-63 204.7 0.5 1.5e-63 204.6 0.5 1.0 1 0 0 1 1 1 1 - +HBA_MACFA - sp|P02185|MYG_PHYCD - 2.9e-63 203.6 0.2 3.2e-63 203.5 0.2 1.0 1 0 0 1 1 1 1 - +HBA_MACSI - sp|P02185|MYG_PHYCD - 4e-63 203.2 0.2 4.4e-63 203.0 0.2 1.0 1 0 0 1 1 1 1 - +HBB1_VAREX - sp|P02185|MYG_PHYCD - 5e-63 202.9 0.1 5.9e-63 202.6 0.1 1.0 1 0 0 1 1 1 1 - +HBA_AILME - sp|P02185|MYG_PHYCD - 5.7e-63 202.7 0.1 6.4e-63 202.5 0.1 1.0 1 0 0 1 1 1 1 - +HBA2_BOSMU - sp|P02185|MYG_PHYCD - 8.6e-63 202.1 0.3 9.6e-63 201.9 0.3 1.0 1 0 0 1 1 1 1 - +HBA_FRAPO - sp|P02185|MYG_PHYCD - 1.8e-62 201.0 0.3 2e-62 200.9 0.3 1.0 1 0 0 1 1 1 1 - +HBA2_GALCR - sp|P02185|MYG_PHYCD - 1.9e-62 201.0 0.4 2.1e-62 200.8 0.4 1.0 1 0 0 1 1 1 1 - +HBA_PHACO - sp|P02185|MYG_PHYCD - 2.1e-62 200.8 0.3 2.4e-62 200.7 0.3 1.0 1 0 0 1 1 1 1 - +HBA_ANSSE - sp|P02185|MYG_PHYCD - 4e-62 199.9 0.3 4.4e-62 199.8 0.3 1.0 1 0 0 1 1 1 1 - +HBA_ERIEU - sp|P02185|MYG_PHYCD - 4e-62 199.9 0.1 4.5e-62 199.8 0.1 1.0 1 0 0 1 1 1 1 - +HBA_PAGLA - sp|P02185|MYG_PHYCD - 8.3e-62 198.9 0.3 9.2e-62 198.8 0.3 1.0 1 0 0 1 1 1 1 - +HBA_PROLO - sp|P02185|MYG_PHYCD - 9.5e-62 198.7 0.0 1.1e-61 198.6 0.0 1.0 1 0 0 1 1 1 1 - +HBA_TRIOC - sp|P02185|MYG_PHYCD - 2.2e-61 197.5 0.4 2.4e-61 197.4 0.4 1.0 1 0 0 1 1 1 1 - +HBAD_CHLME - sp|P02185|MYG_PHYCD - 1.2e-60 195.1 0.5 1.3e-60 195.0 0.5 1.0 1 0 0 1 1 1 1 - +HBAZ_HORSE - sp|P02185|MYG_PHYCD - 4.1e-60 193.4 0.1 4.5e-60 193.3 0.1 1.0 1 0 0 1 1 1 1 - +HBA_COLLI - sp|P02185|MYG_PHYCD - 6e-60 192.9 0.2 6.7e-60 192.7 0.2 1.0 1 0 0 1 1 1 1 - +HBBL_RANCA - sp|P02185|MYG_PHYCD - 1.7e-59 191.4 0.2 2e-59 191.2 0.2 1.0 1 0 0 1 1 1 1 - +HBAD_PASMO - sp|P02185|MYG_PHYCD - 2.2e-59 191.0 0.1 2.4e-59 190.9 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_XENTR - sp|P02185|MYG_PHYCD - 1.1e-58 188.8 0.6 1.3e-58 188.6 0.6 1.0 1 0 0 1 1 1 1 - +HBA4_SALIR - sp|P02185|MYG_PHYCD - 5.3e-56 180.0 0.1 5.9e-56 179.9 0.1 1.0 1 0 0 1 1 1 1 - +MYG_MUSAN - sp|P02185|MYG_PHYCD - 2.5e-54 174.6 0.4 2.8e-54 174.5 0.4 1.0 1 0 0 1 1 1 1 - +HBB2_TRICR - sp|P02185|MYG_PHYCD - 2e-52 168.4 0.0 2.2e-52 168.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_MANSP - sp|P02024|HBB_GORGO - 3.6e-74 238.9 0.1 4e-74 238.8 0.1 1.0 1 0 0 1 1 1 1 - +HBB_URSMA - sp|P02024|HBB_GORGO - 1.7e-73 236.7 0.3 1.9e-73 236.6 0.3 1.0 1 0 0 1 1 1 1 - +HBB_RABIT - sp|P02024|HBB_GORGO - 2.2e-72 233.1 0.8 2.4e-72 233.0 0.8 1.0 1 0 0 1 1 1 1 - +HBB_SUNMU - sp|P02024|HBB_GORGO - 5.4e-72 231.8 0.1 6e-72 231.7 0.1 1.0 1 0 0 1 1 1 1 - +HBB_CALAR - sp|P02024|HBB_GORGO - 7e-72 231.5 0.2 7.7e-72 231.3 0.2 1.0 1 0 0 1 1 1 1 - +HBB_COLLI - sp|P02024|HBB_GORGO - 9.6e-72 231.0 0.0 1.1e-71 230.9 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TACAC - sp|P02024|HBB_GORGO - 2.5e-71 229.7 0.4 2.8e-71 229.6 0.4 1.0 1 0 0 1 1 1 1 - +HBE_PONPY - sp|P02024|HBB_GORGO - 4.8e-71 228.8 0.4 5.3e-71 228.6 0.4 1.0 1 0 0 1 1 1 1 - +HBB_EQUHE - sp|P02024|HBB_GORGO - 5.1e-71 228.7 0.2 5.7e-71 228.5 0.2 1.0 1 0 0 1 1 1 1 - +HBB_SPECI - sp|P02024|HBB_GORGO - 1.3e-70 227.3 1.0 1.5e-70 227.2 1.0 1.0 1 0 0 1 1 1 1 - +HBB_SPETO - sp|P02024|HBB_GORGO - 2e-70 226.8 0.6 2.2e-70 226.6 0.6 1.0 1 0 0 1 1 1 1 - +HBB_TRIIN - sp|P02024|HBB_GORGO - 3.7e-70 225.9 0.1 4.1e-70 225.8 0.1 1.0 1 0 0 1 1 1 1 - +HBB_ORNAN - sp|P02024|HBB_GORGO - 4.1e-70 225.7 0.0 4.6e-70 225.6 0.0 1.0 1 0 0 1 1 1 1 - +HBB_LARRI - sp|P02024|HBB_GORGO - 5.7e-70 225.3 0.0 6.4e-70 225.1 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TUPGL - sp|P02024|HBB_GORGO - 1.8e-68 220.5 0.0 1.9e-68 220.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB1_VAREX - sp|P02024|HBB_GORGO - 1.5e-67 217.4 0.1 1.7e-67 217.3 0.1 1.0 1 0 0 1 1 1 1 - +HBBL_RANCA - sp|P02024|HBB_GORGO - 7.8e-64 205.4 0.3 8.7e-64 205.2 0.3 1.0 1 0 0 1 1 1 1 - +HBA_MESAU - sp|P02024|HBB_GORGO - 4.5e-63 202.9 0.3 5e-63 202.8 0.3 1.0 1 0 0 1 1 1 1 - +HBB2_XENTR - sp|P02024|HBB_GORGO - 2e-62 200.8 0.8 2.3e-62 200.6 0.8 1.0 1 0 0 1 1 1 1 - +HBA_PONPY - sp|P02024|HBB_GORGO - 4.6e-62 199.6 0.7 5e-62 199.5 0.7 1.0 1 0 0 1 1 1 1 - +HBA_MACFA - sp|P02024|HBB_GORGO - 8.7e-62 198.7 0.3 9.6e-62 198.6 0.3 1.0 1 0 0 1 1 1 1 - +HBA_MACSI - sp|P02024|HBB_GORGO - 1.3e-61 198.2 0.3 1.4e-61 198.1 0.3 1.0 1 0 0 1 1 1 1 - +HBA_AILME - sp|P02024|HBB_GORGO - 2.1e-61 197.5 0.1 2.4e-61 197.3 0.1 1.0 1 0 0 1 1 1 1 - +HBA2_GALCR - sp|P02024|HBB_GORGO - 6.6e-61 195.9 0.6 7.3e-61 195.7 0.6 1.0 1 0 0 1 1 1 1 - +HBA_FRAPO - sp|P02024|HBB_GORGO - 7.1e-61 195.8 0.4 7.8e-61 195.7 0.4 1.0 1 0 0 1 1 1 1 - +HBA_PHACO - sp|P02024|HBB_GORGO - 7.3e-61 195.7 0.4 8e-61 195.6 0.4 1.0 1 0 0 1 1 1 1 - +HBA2_BOSMU - sp|P02024|HBB_GORGO - 7.6e-61 195.7 0.4 8.3e-61 195.6 0.4 1.0 1 0 0 1 1 1 1 - +HBA_ERIEU - sp|P02024|HBB_GORGO - 2.4e-60 194.0 0.1 2.7e-60 193.9 0.1 1.0 1 0 0 1 1 1 1 - +HBA_PROLO - sp|P02024|HBB_GORGO - 3.3e-60 193.6 0.0 3.6e-60 193.5 0.0 1.0 1 0 0 1 1 1 1 - +HBA_ANSSE - sp|P02024|HBB_GORGO - 3.9e-60 193.4 0.4 4.3e-60 193.2 0.4 1.0 1 0 0 1 1 1 1 - +HBA_PAGLA - sp|P02024|HBB_GORGO - 4.1e-60 193.3 0.5 4.5e-60 193.2 0.5 1.0 1 0 0 1 1 1 1 - +HBA_TRIOC - sp|P02024|HBB_GORGO - 2.7e-59 190.7 0.5 2.9e-59 190.5 0.5 1.0 1 0 0 1 1 1 1 - +HBAD_CHLME - sp|P02024|HBB_GORGO - 6.3e-59 189.4 0.5 7e-59 189.3 0.5 1.0 1 0 0 1 1 1 1 - +HBAZ_HORSE - sp|P02024|HBB_GORGO - 7.5e-59 189.2 0.1 8.2e-59 189.1 0.1 1.0 1 0 0 1 1 1 1 - +HBA_COLLI - sp|P02024|HBB_GORGO - 1.6e-58 188.1 0.2 1.8e-58 188.0 0.2 1.0 1 0 0 1 1 1 1 - +HBAD_PASMO - sp|P02024|HBB_GORGO - 2e-58 187.8 0.1 2.2e-58 187.7 0.1 1.0 1 0 0 1 1 1 1 - +MYG_SAISC - sp|P02024|HBB_GORGO - 2.9e-57 184.1 1.0 3.2e-57 183.9 1.0 1.0 1 0 0 1 1 1 1 - +MYG_LYCPI - sp|P02024|HBB_GORGO - 3e-57 184.0 1.9 3.3e-57 183.9 1.9 1.0 1 0 0 1 1 1 1 - +MYG_PROGU - sp|P02024|HBB_GORGO - 8.3e-57 182.6 0.2 9.2e-57 182.4 0.2 1.0 1 0 0 1 1 1 1 - +MYG_ESCGI - sp|P02024|HBB_GORGO - 8.8e-57 182.5 2.3 9.7e-57 182.4 2.3 1.0 1 0 0 1 1 1 1 - +MYG_HORSE - sp|P02024|HBB_GORGO - 2.5e-56 181.0 1.0 2.7e-56 180.9 1.0 1.0 1 0 0 1 1 1 1 - +MYG_MOUSE - sp|P02024|HBB_GORGO - 4.7e-56 180.1 0.3 5.2e-56 180.0 0.3 1.0 1 0 0 1 1 1 1 - +HBA4_SALIR - sp|P02024|HBB_GORGO - 7.5e-56 179.5 0.1 8.3e-56 179.3 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_TRICR - sp|P02024|HBB_GORGO - 2.7e-55 177.7 0.0 3e-55 177.5 0.0 1.0 1 0 0 1 1 1 1 - +MYG_MUSAN - sp|P02024|HBB_GORGO - 4.6e-45 144.5 0.3 5.1e-45 144.3 0.3 1.0 1 0 0 1 1 1 1 - # # Program: jackhmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmphb1nFG/files/000/dataset_1.dat -# Target file: /tmp/tmphb1nFG/files/000/dataset_2.dat -# Option settings: jackhmmer -N 5 --tblout /tmp/tmphb1nFG/files/000/dataset_4.dat --domtblout /tmp/tmphb1nFG/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --fast --hand --symfrac 0.5 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmphb1nFG/files/000/dataset_1.dat /tmp/tmphb1nFG/files/000/dataset_2.dat -# Current dir: /tmp/tmphb1nFG/job_working_directory/000/3 -# Date: Sat Jun 25 19:33:04 2016 +# Query file: /tmp/tmpw5_nj0/files/000/dataset_1.dat +# Target file: /tmp/tmpw5_nj0/files/000/dataset_2.dat +# Option settings: jackhmmer -N 5 --tblout /tmp/tmpw5_nj0/files/000/dataset_4.dat --domtblout /tmp/tmpw5_nj0/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpw5_nj0/files/000/dataset_1.dat /tmp/tmpw5_nj0/files/000/dataset_2.dat +# Current dir: /tmp/tmpw5_nj0/job_working_directory/000/3/working +# Date: Mon Jun 11 17:59:06 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/nhmmer.out --- a/test-data/nhmmer.out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/nhmmer.out Mon Jun 11 15:52:17 2018 -0400 @@ -1,11 +1,11 @@ -# nhmmer :: search a DNA model or alignment against a DNA database -# HMMER 3.1b2 (February 2015); http://hmmer.org/ -# Copyright (C) 2015 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# nhmmer :: search a DNA model, alignment, or sequence against a DNA database +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query file: /tmp/tmpprnvgs/files/000/dataset_1.dat -# target sequence database: /tmp/tmpprnvgs/files/000/dataset_2.dat -# hits tabular output: /tmp/tmpprnvgs/files/000/dataset_4.dat +# query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat +# target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_37.dat +# hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_39.dat # hits output in Dfam format: None # max ASCII text line length: unlimited # SSV filter P threshold: <= 0.02 @@ -22,35 +22,35 @@ Scores for complete hits: E-value score bias Sequence start end Description ------- ------ ----- -------- ----- ----- ----------- - 1.2e-10 38.6 7.4 humanchr1/239220001-239550000 302390 302466 - 7.8e-08 29.6 8.3 humanchr1/239220001-239550000 174456 174498 - 1.2e-07 28.9 6.0 humanchr1/239220001-239550000 302466 302390 - 7.2e-06 23.3 7.0 humanchr1/239220001-239550000 174493 174456 + 8.7e-11 39.2 7.4 humanchr1/239220001-239550000 302390 302466 + 6.4e-08 30.0 8.3 humanchr1/239220001-239550000 174456 174498 + 9.3e-08 29.5 6.1 humanchr1/239220001-239550000 302466 302390 + 6.3e-06 23.7 7.0 humanchr1/239220001-239550000 174493 174456 ------ inclusion threshold ------ - 1.4 6.3 7.0 humanchr1/239220001-239550000 304073 304104 + 1.4 6.5 7.0 humanchr1/239220001-239550000 304073 304104 Annotation for each hit (and alignments): >> humanchr1/239220001-239550000 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 38.6 7.4 1.2e-10 4 80 .] 302390 302466 .. 302387 302466 .. 330000 0.87 + ! 39.2 7.4 8.7e-11 4 80 .] 302390 302466 .. 302387 302466 .. 330000 0.87 Alignment: - score: 38.6 bits + score: 39.2 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 4 ggttggtgcaaaagtaattgcggtttttgccattacttttaatggc....aaaaaccgcaattacttttgcaccaacctaa 80 - ggt ggtgcaaaa aattg ggtttttgccatt cttttaat gc a aaa g a t ctttt caccaa ctaa - humanchr1/239220001-239550000 302390 GGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCttttA-AAA--GTA-ATGCTTTTACACCAATCTAA 302466 - 899******************************************955533.443..334.4689***********99986 PP + ggt ggtgcaaaa aattg ggtttttgccatt cttttaat gc a aaa g a t ctttt caccaa ctaa + humanchr1/239220001-239550000 302390 GGTCGGTGCAAAATCAATTGTGGTTTTTGCCATTGCTTTTAATTGCttttA-AAA--GT-AATGCTTTTACACCAATCTAA 302466 + 899******************************************955533.443..33.44689************9986 PP >> humanchr1/239220001-239550000 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 29.6 8.3 7.8e-08 1 43 [. 174456 174498 .. 174456 174518 .. 330000 0.92 + ! 30.0 8.3 6.4e-08 1 43 [. 174456 174498 .. 174456 174518 .. 330000 0.92 Alignment: - score: 29.6 bits + score: 30.0 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt 43 ttaggtt gtgcaaaagtaattg ggtttttg cattactttt @@ -60,36 +60,36 @@ >> humanchr1/239220001-239550000 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 28.9 6.0 1.2e-07 1 77 [. 302466 302390 .. 302466 302387 .. 330000 0.74 + ! 29.5 6.1 9.3e-08 1 77 [. 302466 302390 .. 302466 302387 .. 330000 0.74 Alignment: - score: 28.9 bits + score: 29.5 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 1 ttaggttggtgcaaaagtaattgcggtttttgccattactttt................aatggcaaaaaccgcaattacttttgcaccaacc 77 ttag ttggtg aaaag cattactttt aatggcaaaaacc caatt ttttgcacc acc humanchr1/239220001-239550000 302466 TTAGATTGGTGTAAAAG----------------CATTACTTTTaaaagcaattaaaagcAATGGCAAAAACCACAATTGATTTTGCACCGACC 302390 - 68999999999999998................5666777776222222222222222268****************************9998 PP + 68999999999999998................4666777765222222222222222268****************************9998 PP >> humanchr1/239220001-239550000 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ! 23.3 7.0 7.2e-06 43 80 .] 174493 174456 .. 174513 174456 .. 330000 0.91 + ! 23.7 7.0 6.3e-06 43 80 .] 174493 174456 .. 174513 174456 .. 330000 0.91 Alignment: - score: 23.3 bits + score: 23.7 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 43 taatggcaaaaaccgcaattacttttgcaccaacctaa 80 taatg caaaaacc caattacttttgcac aacctaa humanchr1/239220001-239550000 174493 TAATGACAAAAACCACAATTACTTTTGCACTAACCTAA 174456 - 689********************************985 PP + 689********************************986 PP >> humanchr1/239220001-239550000 score bias Evalue hmmfrom hmm to alifrom ali to envfrom env to sq len acc ------ ----- --------- ------- ------- --------- --------- --------- --------- --------- ---- - ? 6.3 7.0 1.4 41 72 .. 304073 304104 .. 304053 304109 .. 330000 0.85 + ? 6.5 7.0 1.4 41 72 .. 304073 304104 .. 304053 304109 .. 330000 0.85 Alignment: - score: 6.3 bits + score: 6.5 bits xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF MADE1 41 tttaatggcaaaaaccgcaattacttttgcac 72 tt a tgg aaaaa ca tta ttttgca @@ -100,14 +100,14 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (80 nodes) -Target sequences: 1 (660000 residues searched) -Residues passing SSV filter: 61794 (0.0936); expected (0.02) -Residues passing bias filter: 46199 (0.07); expected (0.02) -Residues passing Vit filter: 2752 (0.00417); expected (0.001) -Residues passing Fwd filter: 2526 (0.00383); expected (1e-05) -Total number of hits: 5 (0.000405) -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1760.00 +Query model(s): 1 (80 nodes) +Target sequences: 1 (660000 residues searched) +Residues passing SSV filter: 63737 (0.0966); expected (0.02) +Residues passing bias filter: 44695 (0.0677); expected (0.02) +Residues passing Vit filter: 2309 (0.0035); expected (0.001) +Residues passing Fwd filter: 2041 (0.00309); expected (1e-05) +Total number of hits: 5 (0.000405) +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1854.66 // [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/nhmmer.out.dfamtblout --- a/test-data/nhmmer.out.dfamtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/nhmmer.out.dfamtblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,17 +1,17 @@ # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- -humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 1.2e-10 38.6 7.4 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 7.8e-08 29.6 8.3 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 1.2e-07 28.9 6.0 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 7.2e-06 23.3 7.0 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.3 7.0 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 8.7e-11 39.2 7.4 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 6.4e-08 30.0 8.3 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 9.3e-08 29.5 6.1 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 6.3e-06 23.7 7.0 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.5 7.0 - # # Program: nhmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpnpsbd_6p/files/000/dataset_1.dat -# Target file: /tmp/tmpnpsbd_6p/files/000/dataset_2.dat -# Option settings: nhmmer --tblout /tmp/tmpnpsbd_6p/files/000/dataset_4.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpnpsbd_6p/files/000/dataset_1.dat /tmp/tmpnpsbd_6p/files/000/dataset_2.dat -# Current dir: /tmp/tmpnpsbd_6p/job_working_directory/000/3/working -# Date: Fri Apr 6 16:39:46 2018 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_37.dat +# Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/30/working +# Date: Fri Jun 8 12:18:56 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/nhmmer.out.tblout --- a/test-data/nhmmer.out.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/nhmmer.out.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -1,17 +1,17 @@ # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- -humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 1.2e-10 38.6 7.4 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 7.8e-08 29.6 8.3 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 1.2e-07 28.9 6.0 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 7.2e-06 23.3 7.0 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.3 7.0 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 8.7e-11 39.2 7.4 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 6.4e-08 30.0 8.3 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 9.3e-08 29.5 6.1 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 6.3e-06 23.7 7.0 - +humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.5 7.0 - # # Program: nhmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpnpsbd_6p/files/000/dataset_1.dat -# Target file: /tmp/tmpnpsbd_6p/files/000/dataset_2.dat -# Option settings: nhmmer --tblout /tmp/tmpnpsbd_6p/files/000/dataset_4.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpnpsbd_6p/files/000/dataset_1.dat /tmp/tmpnpsbd_6p/files/000/dataset_2.dat -# Current dir: /tmp/tmpnpsbd_6p/job_working_directory/000/3/working -# Date: Fri Apr 6 16:39:46 2018 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_37.dat +# Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/30/working +# Date: Fri Jun 8 12:18:56 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/phmmer.domtblout --- a/test-data/phmmer.domtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/phmmer.domtblout Mon Jun 11 15:52:17 2018 -0400 @@ -92,11 +92,11 @@ sp|P02024|HBB_GORGO - 147 HBB2_TRICR - 145 2.7e-46 144.3 0.0 1 1 1.5e-46 3e-46 144.1 0.0 1 145 2 146 2 146 0.98 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: phmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpqKBUss/files/000/dataset_1.dat -# Target file: /tmp/tmpqKBUss/files/000/dataset_2.dat -# Option settings: phmmer --tblout /tmp/tmpqKBUss/files/000/dataset_4.dat --domtblout /tmp/tmpqKBUss/files/000/dataset_5.dat --pfamtblout /tmp/tmpqKBUss/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpqKBUss/files/000/dataset_1.dat /tmp/tmpqKBUss/files/000/dataset_2.dat -# Current dir: /tmp/tmpqKBUss/job_working_directory/000/3 -# Date: Sat Jun 25 19:48:26 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Option settings: phmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_48.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_49.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_50.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_45.dat /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/36/working +# Date: Fri Jun 8 12:19:38 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/phmmer.out --- a/test-data/phmmer.out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/phmmer.out Mon Jun 11 15:52:17 2018 -0400 @@ -1,18 +1,18 @@ # phmmer :: search a protein sequence against a protein database -# HMMER 3.1b1 (May 2013); http://hmmer.org/ -# Copyright (C) 2013 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: test-data/globins45.fa -# target sequence database: test-data/uniprot_matches.fasta -# per-seq hits tabular output: test-data/phmmer.tblout -# per-dom hits tabular output: test-data/phmmer.domtblout -# pfam-style tabular hit output: test-data/phmmer.pfamtblout +# query sequence file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat +# target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_48.dat +# per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_49.dat +# pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_50.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 # random number seed set to: 4 -# number of worker threads: 2 +# number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MYG_ESCGI [L=153] @@ -53,16 +53,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.67 // Query: MYG_HORSE [L=153] Scores for complete sequences (score includes all domains): @@ -102,16 +102,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.15 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.81 // Query: MYG_PROGU [L=153] Scores for complete sequences (score includes all domains): @@ -151,16 +151,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.81 // Query: MYG_SAISC [L=153] Scores for complete sequences (score includes all domains): @@ -200,16 +200,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.78 // Query: MYG_LYCPI [L=153] Scores for complete sequences (score includes all domains): @@ -249,16 +249,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.15 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.74 // Query: MYG_MOUSE [L=153] Scores for complete sequences (score includes all domains): @@ -298,16 +298,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.78 // Query: MYG_MUSAN [L=148] Scores for complete sequences (score includes all domains): @@ -347,16 +347,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (148 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (148 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.48 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.88 // Query: HBA_AILME [L=141] Scores for complete sequences (score includes all domains): @@ -396,16 +396,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBA_PROLO [L=141] Scores for complete sequences (score includes all domains): @@ -445,16 +445,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.73 // Query: HBA_PAGLA [L=141] Scores for complete sequences (score includes all domains): @@ -494,16 +494,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.33 // Query: HBA_MACFA [L=141] Scores for complete sequences (score includes all domains): @@ -543,16 +543,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.65 // Query: HBA_MACSI [L=141] Scores for complete sequences (score includes all domains): @@ -592,16 +592,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.73 // Query: HBA_PONPY [L=141] Scores for complete sequences (score includes all domains): @@ -641,16 +641,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.67 // Query: HBA2_GALCR [L=141] Scores for complete sequences (score includes all domains): @@ -690,16 +690,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.68 // Query: HBA_MESAU [L=141] Scores for complete sequences (score includes all domains): @@ -739,16 +739,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.41 // Query: HBA2_BOSMU [L=141] Scores for complete sequences (score includes all domains): @@ -788,16 +788,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 -# Mc/sec: 2.12 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.64 // Query: HBA_ERIEU [L=141] Scores for complete sequences (score includes all domains): @@ -837,16 +837,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.76 // Query: HBA_FRAPO [L=141] Scores for complete sequences (score includes all domains): @@ -886,16 +886,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.70 // Query: HBA_PHACO [L=141] Scores for complete sequences (score includes all domains): @@ -935,16 +935,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.56 // Query: HBA_TRIOC [L=141] Scores for complete sequences (score includes all domains): @@ -984,16 +984,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.35 // Query: HBA_ANSSE [L=141] Scores for complete sequences (score includes all domains): @@ -1033,16 +1033,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.52 // Query: HBA_COLLI [L=141] Scores for complete sequences (score includes all domains): @@ -1082,16 +1082,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.79 // Query: HBAD_CHLME [L=141] Scores for complete sequences (score includes all domains): @@ -1131,16 +1131,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // Query: HBAD_PASMO [L=141] Scores for complete sequences (score includes all domains): @@ -1180,16 +1180,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.10 // Query: HBAZ_HORSE [L=141] Scores for complete sequences (score includes all domains): @@ -1229,16 +1229,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.21 // Query: HBA4_SALIR [L=142] Scores for complete sequences (score includes all domains): @@ -1278,16 +1278,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (142 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (142 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.07 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.72 // Query: HBB_ORNAN [L=146] Scores for complete sequences (score includes all domains): @@ -1327,16 +1327,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 -# Mc/sec: 0.88 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.63 // Query: HBB_TACAC [L=146] Scores for complete sequences (score includes all domains): @@ -1376,16 +1376,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.82 // Query: HBE_PONPY [L=146] Scores for complete sequences (score includes all domains): @@ -1425,16 +1425,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 +# Mc/sec: 1.68 // Query: HBB_SPECI [L=146] Scores for complete sequences (score includes all domains): @@ -1474,16 +1474,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.16 // Query: HBB_SPETO [L=146] Scores for complete sequences (score includes all domains): @@ -1523,16 +1523,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.50 // Query: HBB_EQUHE [L=146] Scores for complete sequences (score includes all domains): @@ -1572,16 +1572,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.16 // Query: HBB_SUNMU [L=146] Scores for complete sequences (score includes all domains): @@ -1621,16 +1621,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.00 // Query: HBB_CALAR [L=146] Scores for complete sequences (score includes all domains): @@ -1670,16 +1670,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // Query: HBB_MANSP [L=146] Scores for complete sequences (score includes all domains): @@ -1719,16 +1719,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.86 // Query: HBB_URSMA [L=146] Scores for complete sequences (score includes all domains): @@ -1768,16 +1768,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.65 // Query: HBB_RABIT [L=146] Scores for complete sequences (score includes all domains): @@ -1817,16 +1817,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.57 // Query: HBB_TUPGL [L=146] Scores for complete sequences (score includes all domains): @@ -1866,16 +1866,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBB_TRIIN [L=146] Scores for complete sequences (score includes all domains): @@ -1915,16 +1915,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBB_COLLI [L=146] Scores for complete sequences (score includes all domains): @@ -1964,16 +1964,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.22 // Query: HBB_LARRI [L=146] Scores for complete sequences (score includes all domains): @@ -2013,16 +2013,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.82 // Query: HBB1_VAREX [L=146] Scores for complete sequences (score includes all domains): @@ -2062,16 +2062,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.75 // Query: HBB2_XENTR [L=146] Scores for complete sequences (score includes all domains): @@ -2111,16 +2111,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 +# Mc/sec: 1.82 // Query: HBBL_RANCA [L=146] Scores for complete sequences (score includes all domains): @@ -2160,16 +2160,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.80 // Query: HBB2_TRICR [L=145] Scores for complete sequences (score includes all domains): @@ -2196,15 +2196,15 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (145 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (145 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.09 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/phmmer.pfamtblout --- a/test-data/phmmer.pfamtblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/phmmer.pfamtblout Mon Jun 11 15:52:17 2018 -0400 @@ -673,11 +673,11 @@ sp|P02024|HBB_GORGO 144.1 3e-46 1 0.0 2 146 2 146 1 145 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: phmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpqKBUss/files/000/dataset_1.dat -# Target file: /tmp/tmpqKBUss/files/000/dataset_2.dat -# Option settings: phmmer --tblout /tmp/tmpqKBUss/files/000/dataset_4.dat --domtblout /tmp/tmpqKBUss/files/000/dataset_5.dat --pfamtblout /tmp/tmpqKBUss/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpqKBUss/files/000/dataset_1.dat /tmp/tmpqKBUss/files/000/dataset_2.dat -# Current dir: /tmp/tmpqKBUss/job_working_directory/000/3 -# Date: Sat Jun 25 19:48:26 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Option settings: phmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_48.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_49.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_50.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_45.dat /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/36/working +# Date: Fri Jun 8 12:19:38 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/phmmer.tblout --- a/test-data/phmmer.tblout Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/phmmer.tblout Mon Jun 11 15:52:17 2018 -0400 @@ -92,11 +92,11 @@ sp|P02024|HBB_GORGO - HBB2_TRICR - 2.7e-46 144.3 0.0 3e-46 144.1 0.0 1.0 1 0 0 1 1 1 1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 # # Program: phmmer -# Version: 3.1b2 (February 2015) +# Version: 3.2 (June 2018) # Pipeline mode: SEARCH -# Query file: /tmp/tmpqKBUss/files/000/dataset_1.dat -# Target file: /tmp/tmpqKBUss/files/000/dataset_2.dat -# Option settings: phmmer --tblout /tmp/tmpqKBUss/files/000/dataset_4.dat --domtblout /tmp/tmpqKBUss/files/000/dataset_5.dat --pfamtblout /tmp/tmpqKBUss/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpqKBUss/files/000/dataset_1.dat /tmp/tmpqKBUss/files/000/dataset_2.dat -# Current dir: /tmp/tmpqKBUss/job_working_directory/000/3 -# Date: Sat Jun 25 19:48:26 2016 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat +# Target file: /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Option settings: phmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_48.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_49.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_50.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_45.dat /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/36/working +# Date: Fri Jun 8 12:19:38 2018 # [ok] diff -r 7ea31fc35394 -r d0875d3f6544 test-data/uniprot_globins_match.out --- a/test-data/uniprot_globins_match.out Sat Apr 07 03:51:18 2018 -0400 +++ b/test-data/uniprot_globins_match.out Mon Jun 11 15:52:17 2018 -0400 @@ -1,13 +1,13 @@ # hmmsearch :: search profile(s) against a sequence database -# HMMER 3.1b2 (February 2015); http://hmmer.org/ -# Copyright (C) 2015 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query HMM file: /tmp/tmpJW6ntL/files/000/dataset_1.dat -# target sequence database: /tmp/tmpJW6ntL/files/000/dataset_2.dat -# per-seq hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_4.dat -# per-dom hits tabular output: /tmp/tmpJW6ntL/files/000/dataset_5.dat -# pfam-style tabular hit output: /tmp/tmpJW6ntL/files/000/dataset_6.dat +# query HMM file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat +# target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_26.dat +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_28.dat +# per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_29.dat +# pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_30.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 @@ -15,7 +15,7 @@ # number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Query: globins4 [M=149] +Query: dataset_x [M=149] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description @@ -32,7 +32,7 @@ Alignments for each domain: == domain 1 score: 222.6 bits; conditional E-value: 2e-70 - globins4 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 + dataset_x 2 vLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 vLse+e++ v++vWakveadv+++G+diL+rlfks+P+t+e+F++Fk+L+te+e+k+s+d+kkHg++vl+Al+++l+k ++++ea+lk+L+++Ha+k+k+++ky++++se++++vl++r+p++f+ad+q+a++K+l+l++k++a+kYk sp|P02185|MYG_PHYCD 2 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYK 148 8*****************************************************************************.99******************************************************************7 PP @@ -44,7 +44,7 @@ Alignments for each domain: == domain 1 score: 217.0 bits; conditional E-value: 1e-68 - globins4 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 + dataset_x 1 vvLseaektkvkavWakveadveesGadiLvrlfkstPatqefFekFkdLstedelkksadvkkHgkkvldAlsdalakldekleaklkdLselHakklkvdpkyfkllsevlvdvlaarlpkeftadvqaaleKllalvakllaskYk 149 v+L+++ek++v+a+W+kv +v+e+G+++L rl++++P+tq+fFe+F+dLst+d+++++++vk+Hgkkvl+A+sd+la+ld +l++++++LselH++kl+vdp++fkll++vlv+vla++++keft++vqaa++K++a va++la+kY+ sp|P02024|HBB_GORGO 2 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLD-NLKGTFATLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 147 69****************..*************************************************************.******************************************************************7 PP @@ -53,8 +53,8 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (149 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (149 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) @@ -62,6 +62,6 @@ Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 -# Mc/sec: inf +# Mc/sec: 20.02 // [ok]