Mercurial > repos > iuc > hmmer_hmmconvert

diff hmmconvert.xml @ 5:8d5ec58d2172 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:37:52 -0400
parents f92edeb5e4c4
children d20066f6566e
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line diff
--- a/hmmconvert.xml	Mon Jun 11 15:52:53 2018 -0400
+++ b/hmmconvert.xml	Tue Jun 16 05:37:52 2020 -0400
@@ -30,8 +30,15 @@
   <tests>
     <test>
       <param name="hmmfile" value="globins4.hmm"/>
-      <param name="format" value="-2"/>
-      <output name="output" file="globins4.hmm2" lines_diff="4"/>
+      <param name="format" value="-2" ftype="hmm2"/>
+      <output name="output" file="globins4.hmm2" compare="sim_size">
+          <assert_contents>
+              <has_line_matching expression="HMMER2.*"/>
+              <has_line_matching expression="ALPH  Amino"/>
+              <has_line_matching expression="NSEQ  4"/>
+              <has_line_matching expression="//"/>
+          </assert_contents>
+      </output>
     </test>
   </tests>
   <help><![CDATA[