Mercurial > repos > iuc > hmmer_hmmconvert
diff hmmconvert.xml @ 0:dca536c5cca5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author | iuc |
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date | Sat, 25 Jun 2016 15:05:21 -0400 |
parents | |
children | b03487ad64c8 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hmmconvert.xml Sat Jun 25 15:05:21 2016 -0400 @@ -0,0 +1,49 @@ +<?xml version="1.0"?> +<tool id="hmmer_hmmconvert" name="hmmconvert" version="@WRAPPER_VERSION@.0"> + <description>convert profile file to a HMMER format</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio"/> + <command><![CDATA[ +hmmconvert +$format +$hmmfile > $output + ]]></command> + <inputs> + <expand macro="input_hmm" /> + <param type="select" label="Output Format" name="format"> + <option value="-a" selected="true">output models in HMMER3 ASCII format</option> + <!--<option value="-b">output models in HMMER3 binary format</option>--> + <option value="-2">backward compatible HMMER2 ASCII format</option> + </param> + </inputs> + <outputs> + <data format="hmm3" name="output" label="$hmmfile.name"> + <change_format> + <when input="format" value="-a" format="hmm3"/> + <when input="format" value="-2" format="hmm2"/> + </change_format> + </data> + </outputs> + <tests> + <test> + <param name="hmmfile" value="globins4.hmm"/> + <param name="format" value="-2"/> + <output name="output" file="globins4.hmm2"/> + </test> + </tests> + <help><![CDATA[ +@HELP_PRE@ + +The hmmconvert utility converts an input profile file to different HMMER formats. + +By default, the input profile can be in any HMMER format, including +old/obsolete formats from HMMER2, ASCII or binary; the output profile is a +current HMMER3 ASCII format. + +@ATTRIBUTION@ +]]></help> + <expand macro="citation"/> +</tool>