Mercurial > repos > iuc > hmmer_hmmconvert

view test-data/MADE1.nhmmscan_out.tblout @ 6:649b289b4ccc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit db615ae8a189ad988ec08090051a128355a4be70"
author iuc
date Thu, 14 Jan 2021 15:43:23 +0000
parents 8d5ec58d2172
children db8a5a3195e7
line wrap: on
line source

# target name        accession   query name                    accession  hmmfrom hmm to alifrom  ali to envfrom  env to  modlen strand   E-value  score  bias  description of target
#-------------------  ----------          -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                4      80  302390  302466  302387  302466      80    +       4e-11   41.3   7.5  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                1      43  174456  174498  174456  174518      80    +     1.9e-08   32.8   8.3  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -                1      78  302466  302389  302466  302387      80    -     6.3e-08   31.0   6.7  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -               43      80  174493  174456  174513  174456      80    -     4.9e-06   25.0   7.0  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2 humanchr1/239220001-239550000 -               41      71  304073  304103  304053  304109      80    +         2.2    6.9   7.2  MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.3 (Nov 2019)
# Pipeline mode:   SCAN
# Query file:      /tmp/tmpqydies2m/files/f/a/5/dataset_fa559c91-0436-48cb-a47d-20062d4af284.dat
# Target file:     localref.hmm
# Option settings: nhmmscan --tblout /tmp/tmpqydies2m/files/4/7/2/dataset_4723128d-8711-4edb-8afe-a68476a6c127.dat --dfamtblout /tmp/tmpqydies2m/files/1/a/e/dataset_1aeea50b-1263-4750-8237-4fc3f10c0999.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 localref.hmm /tmp/tmpqydies2m/files/f/a/5/dataset_fa559c91-0436-48cb-a47d-20062d4af284.dat 
# Current dir:     /tmp/tmpqydies2m/job_working_directory/000/20/working
# Date:            Thu May 14 18:55:28 2020
# [ok]