Mercurial > repos > iuc > hmmer_hmmemit

annotate test-data/cut_ga_test.out @ 8:e9d622609fb5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:24:12 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
1 # hmmsearch :: search profile(s) against a sequence database
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
3 # Copyright (C) 2020 Howard Hughes Medical Institute.
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
4 # Freely distributed under the BSD open source license.
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
6 # query HMM file: /tmp/saskia/tmpug0qcpsy/files/9/9/b/dataset_99bcd3c6-6d16-4e09-9878-7117f928bb24.dat
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
7 # target sequence database: /tmp/saskia/tmpug0qcpsy/files/f/9/9/dataset_f99d0a82-fcb5-4323-b2d4-8b218045c72e.dat
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
8 # max ASCII text line length: unlimited
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
9 # model-specific thresholding: GA cutoffs
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
10 # Vit filter P threshold: <= 0.001
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
11 # Fwd filter P threshold: <= 1e-05
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
12 # random number seed set to: 4
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
13 # number of worker threads: 0
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
14 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
15
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
16 Query: fn3 [M=86]
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
17 Accession: PF00041.13
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
18 Description: Fibronectin type III domain
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
19 Scores for complete sequences (score includes all domains):
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
20 --- full sequence --- --- best 1 domain --- -#dom-
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
21 E-value score bias E-value score bias exp N Sequence Description
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
22 ------- ------ ----- ------- ------ ----- ---- -- -------- -----------
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
23
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
24 [No hits detected that satisfy reporting thresholds]
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
25
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
26
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
27 Domain annotation for each sequence (and alignments):
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
28
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
29 [No targets detected that satisfy reporting thresholds]
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
30
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
31
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
32 Internal pipeline statistics summary:
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
33 -------------------------------------
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
34 Query model(s): 1 (86 nodes)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
35 Target sequences: 2 (301 residues searched)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
36 Passed MSV filter: 0 (0); expected 0.0 (0.02)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
37 Passed bias filter: 0 (0); expected 0.0 (0.02)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
38 Passed Vit filter: 0 (0); expected 0.0 (0.001)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
39 Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
40 Initial search space (Z): 2 [actual number of targets]
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
41 Domain search space (domZ): 0 [number of targets reported over threshold]
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
42 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
43 # Mc/sec: 144.45
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
44 //
e9d622609fb5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
iuc
parents:
diff changeset
45 [ok]