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comparison test-data/jackhmmer.out @ 7:96b127c59e6a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:11:49 +0000
parents 9415f29a3926
children
comparison
equal deleted inserted replaced
6:a6f41287ef2b 7:96b127c59e6a
1 # jackhmmer :: iteratively search a protein sequence against a protein database 1 # jackhmmer :: iteratively search a protein sequence against a protein database
2 # HMMER 3.3 (Nov 2019); http://hmmer.org/ 2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
3 # Copyright (C) 2019 Howard Hughes Medical Institute. 3 # Copyright (C) 2020 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license. 4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query sequence file: /tmp/tmpfvu1k4r6/files/5/c/1/dataset_5c1435bb-ab6c-4203-863c-578c4a331ea1.dat 6 # query sequence file: /tmp/tmpzdnl83p_/files/2/7/9/dataset_27979eae-6ed4-4ade-aa69-7ece7b993e22.dat
7 # target sequence database: /tmp/tmpfvu1k4r6/files/0/c/2/dataset_0c23de62-c430-473e-92ee-a18da9f58231.dat 7 # target sequence database: /tmp/tmpzdnl83p_/files/e/6/d/dataset_e6d4b38b-8770-49ed-98bb-842ce026d3c8.dat
8 # max ASCII text line length: unlimited 8 # max ASCII text line length: unlimited
9 # Vit filter P threshold: <= 0.001 9 # Vit filter P threshold: <= 0.001
10 # Fwd filter P threshold: <= 1e-05 10 # Fwd filter P threshold: <= 1e-05
11 # random number seed set to: 4 11 # random number seed set to: 4
12 # number of worker threads: 1 12 # number of worker threads: 0
13 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 13 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
14 14
15 Query: sp|P02185|MYG_PHYCD [L=154] 15 Query: sp|P02185|MYG_PHYCD [L=154]
16 Description: Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 16 Description: Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2
17 17
604 Passed bias filter: 45 (1); expected 0.9 (0.02) 604 Passed bias filter: 45 (1); expected 0.9 (0.02)
605 Passed Vit filter: 45 (1); expected 0.0 (0.001) 605 Passed Vit filter: 45 (1); expected 0.0 (0.001)
606 Passed Fwd filter: 44 (0.977778); expected 0.0 (1e-05) 606 Passed Fwd filter: 44 (0.977778); expected 0.0 (1e-05)
607 Initial search space (Z): 45 [actual number of targets] 607 Initial search space (Z): 45 [actual number of targets]
608 Domain search space (domZ): 44 [number of targets reported over threshold] 608 Domain search space (domZ): 44 [number of targets reported over threshold]
609 # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 609 # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03
610 # Mc/sec: 20.54 610 # Mc/sec: 28.10
611 611
612 @@ New targets included: 44 612 @@ New targets included: 44
613 @@ New alignment includes: 45 subseqs (was 1), including original query 613 @@ New alignment includes: 45 subseqs (was 1), including original query
614 @@ Continuing to next round. 614 @@ Continuing to next round.
615 615
1266 Passed bias filter: 45 (1); expected 0.9 (0.02) 1266 Passed bias filter: 45 (1); expected 0.9 (0.02)
1267 Passed Vit filter: 45 (1); expected 0.0 (0.001) 1267 Passed Vit filter: 45 (1); expected 0.0 (0.001)
1268 Passed Fwd filter: 45 (1); expected 0.0 (1e-05) 1268 Passed Fwd filter: 45 (1); expected 0.0 (1e-05)
1269 Initial search space (Z): 45 [actual number of targets] 1269 Initial search space (Z): 45 [actual number of targets]
1270 Domain search space (domZ): 45 [number of targets reported over threshold] 1270 Domain search space (domZ): 45 [number of targets reported over threshold]
1271 # CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.22 1271 # CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.13
1272 # Mc/sec: 4.45 1272 # Mc/sec: 7.65
1273 1273
1274 @@ New targets included: 1 1274 @@ New targets included: 1
1275 @@ New alignment includes: 46 subseqs (was 45), including original query 1275 @@ New alignment includes: 46 subseqs (was 45), including original query
1276 @@ Continuing to next round. 1276 @@ Continuing to next round.
1277 1277
1928 Passed bias filter: 45 (1); expected 0.9 (0.02) 1928 Passed bias filter: 45 (1); expected 0.9 (0.02)
1929 Passed Vit filter: 45 (1); expected 0.0 (0.001) 1929 Passed Vit filter: 45 (1); expected 0.0 (0.001)
1930 Passed Fwd filter: 45 (1); expected 0.0 (1e-05) 1930 Passed Fwd filter: 45 (1); expected 0.0 (1e-05)
1931 Initial search space (Z): 45 [actual number of targets] 1931 Initial search space (Z): 45 [actual number of targets]
1932 Domain search space (domZ): 45 [number of targets reported over threshold] 1932 Domain search space (domZ): 45 [number of targets reported over threshold]
1933 # CPU time: 0.20u 0.00s 00:00:00.20 Elapsed: 00:00:00.20 1933 # CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.13
1934 # Mc/sec: 5.00 1934 # Mc/sec: 7.59
1935 1935
1936 @@ New targets included: 0 1936 @@ New targets included: 0
1937 @@ New alignment includes: 46 subseqs (was 46), including original query 1937 @@ New alignment includes: 46 subseqs (was 46), including original query
1938 @@ 1938 @@
1939 @@ CONVERGED (in 3 rounds). 1939 @@ CONVERGED (in 3 rounds).
2545 Passed bias filter: 45 (1); expected 0.9 (0.02) 2545 Passed bias filter: 45 (1); expected 0.9 (0.02)
2546 Passed Vit filter: 45 (1); expected 0.0 (0.001) 2546 Passed Vit filter: 45 (1); expected 0.0 (0.001)
2547 Passed Fwd filter: 45 (1); expected 0.0 (1e-05) 2547 Passed Fwd filter: 45 (1); expected 0.0 (1e-05)
2548 Initial search space (Z): 45 [actual number of targets] 2548 Initial search space (Z): 45 [actual number of targets]
2549 Domain search space (domZ): 45 [number of targets reported over threshold] 2549 Domain search space (domZ): 45 [number of targets reported over threshold]
2550 # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04 2550 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
2551 # Mc/sec: 20.84 2551 # Mc/sec: 33.36
2552 2552
2553 @@ New targets included: 45 2553 @@ New targets included: 45
2554 @@ New alignment includes: 46 subseqs (was 1), including original query 2554 @@ New alignment includes: 46 subseqs (was 1), including original query
2555 @@ Continuing to next round. 2555 @@ Continuing to next round.
2556 2556
3207 Passed bias filter: 45 (1); expected 0.9 (0.02) 3207 Passed bias filter: 45 (1); expected 0.9 (0.02)
3208 Passed Vit filter: 45 (1); expected 0.0 (0.001) 3208 Passed Vit filter: 45 (1); expected 0.0 (0.001)
3209 Passed Fwd filter: 45 (1); expected 0.0 (1e-05) 3209 Passed Fwd filter: 45 (1); expected 0.0 (1e-05)
3210 Initial search space (Z): 45 [actual number of targets] 3210 Initial search space (Z): 45 [actual number of targets]
3211 Domain search space (domZ): 45 [number of targets reported over threshold] 3211 Domain search space (domZ): 45 [number of targets reported over threshold]
3212 # CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.24 3212 # CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.12
3213 # Mc/sec: 3.96 3213 # Mc/sec: 7.64
3214 3214
3215 @@ New targets included: 0 3215 @@ New targets included: 0
3216 @@ New alignment includes: 46 subseqs (was 46), including original query 3216 @@ New alignment includes: 46 subseqs (was 46), including original query
3217 @@ 3217 @@
3218 @@ CONVERGED (in 2 rounds). 3218 @@ CONVERGED (in 2 rounds).