Mercurial > repos > iuc > hmmer_hmmemit
diff hmmemit.xml @ 5:9415f29a3926 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author | iuc |
---|---|
date | Tue, 16 Jun 2020 05:27:39 -0400 |
parents | 1cd4d0cf8fd9 |
children | e9d622609fb5 |
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--- a/hmmemit.xml Mon Jun 11 15:51:54 2018 -0400 +++ b/hmmemit.xml Tue Jun 16 05:27:39 2020 -0400 @@ -75,13 +75,12 @@ </when> </conditional> - <expand macro="seed"/> </inputs> <outputs> <data name="output" format="fasta" label="Sequences generated from $hmmfile.name"> <change_format> - <when input="oformat_select" value="aln" format="stockholm"/> + <when input="oformat.oformat_select" value="aln" format="stockholm"/> <!-- the rest are fasta --> </change_format> </data> @@ -92,14 +91,23 @@ <param name="oformat_select" value="aln"/> <param name="N_aln" value="10"/> <expand macro="seed_test" /> - <output name="output" file="globins4-emit.sto" compare="sim_size"/> + <output name="output" file="globins4-emit.sto" ftype="stockholm" compare="sim_size"> + <assert_contents> + <has_line_matching expression="# STOCKHOLM.*"/> + <has_line_matching expression="//"/> + </assert_contents> + </output> </test> <test> <param name="hmmfile" value="globins4.hmm"/> <param name="oformat_select" value="fasta"/> <param name="N_aln" value="10"/> <expand macro="seed_test" /> - <output name="output" file="globins4-emit-1.sto" compare="sim_size"/> + <output name="output" file="globins4-emit-1.sto" ftype="fasta" compare="sim_size"> + <assert_contents> + <has_line_matching expression=">.*"/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[