Mercurial > repos > iuc > hmmer_hmmfetch
diff test-data/jackhmmer.tblout @ 0:1d78de693262 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:05:58 -0400 |
| parents | |
| children | 74089c182a50 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/jackhmmer.tblout Sat Jun 25 15:05:58 2016 -0400 @@ -0,0 +1,103 @@ +# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- +# target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target +#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- +HBB_MANSP - sp|P02185|MYG_PHYCD - 7.7e-69 221.6 0.1 8.6e-69 221.5 0.1 1.0 1 0 0 1 1 1 1 - +HBB_URSMA - sp|P02185|MYG_PHYCD - 4.1e-68 219.3 0.2 4.5e-68 219.1 0.2 1.0 1 0 0 1 1 1 1 - +HBB_RABIT - sp|P02185|MYG_PHYCD - 5.6e-67 215.6 0.5 6.3e-67 215.4 0.5 1.0 1 0 0 1 1 1 1 - +HBB_CALAR - sp|P02185|MYG_PHYCD - 1.5e-66 214.2 0.1 1.7e-66 214.0 0.1 1.0 1 0 0 1 1 1 1 - +HBB_TACAC - sp|P02185|MYG_PHYCD - 5e-66 212.5 0.3 5.6e-66 212.4 0.3 1.0 1 0 0 1 1 1 1 - +HBB_COLLI - sp|P02185|MYG_PHYCD - 5.2e-66 212.5 0.0 5.7e-66 212.3 0.0 1.0 1 0 0 1 1 1 1 - +HBE_PONPY - sp|P02185|MYG_PHYCD - 6.6e-66 212.1 0.2 7.4e-66 212.0 0.2 1.0 1 0 0 1 1 1 1 - +HBB_SUNMU - sp|P02185|MYG_PHYCD - 7.2e-66 212.0 0.1 8e-66 211.9 0.1 1.0 1 0 0 1 1 1 1 - +HBB_ORNAN - sp|P02185|MYG_PHYCD - 1e-65 211.5 0.0 1.2e-65 211.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_SPETO - sp|P02185|MYG_PHYCD - 1.5e-65 211.0 0.4 1.7e-65 210.8 0.4 1.0 1 0 0 1 1 1 1 - +HBB_EQUHE - sp|P02185|MYG_PHYCD - 1.6e-65 210.9 0.2 1.8e-65 210.7 0.2 1.0 1 0 0 1 1 1 1 - +HBB_SPECI - sp|P02185|MYG_PHYCD - 2.3e-65 210.4 0.9 2.5e-65 210.2 0.9 1.0 1 0 0 1 1 1 1 - +HBB_LARRI - sp|P02185|MYG_PHYCD - 3e-65 210.0 0.0 3.4e-65 209.8 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TRIIN - sp|P02185|MYG_PHYCD - 8e-65 208.6 0.1 8.9e-65 208.5 0.1 1.0 1 0 0 1 1 1 1 - +HBB_TUPGL - sp|P02185|MYG_PHYCD - 1.2e-62 201.6 0.0 1.3e-62 201.5 0.0 1.0 1 0 0 1 1 1 1 - +HBA_MESAU - sp|P02185|MYG_PHYCD - 1.5e-61 198.0 0.6 1.7e-61 197.8 0.6 1.0 1 0 0 1 1 1 1 - +HBB1_VAREX - sp|P02185|MYG_PHYCD - 3e-61 197.0 0.1 3.4e-61 196.9 0.1 1.0 1 0 0 1 1 1 1 - +HBA_MACFA - sp|P02185|MYG_PHYCD - 6e-61 196.1 1.1 6.6e-61 195.9 1.1 1.0 1 0 0 1 1 1 1 - +HBA_MACSI - sp|P02185|MYG_PHYCD - 9.7e-61 195.4 1.0 1.1e-60 195.2 1.0 1.0 1 0 0 1 1 1 1 - +HBA2_BOSMU - sp|P02185|MYG_PHYCD - 3.2e-60 193.7 0.9 3.6e-60 193.6 0.9 1.0 1 0 0 1 1 1 1 - +HBA_PONPY - sp|P02185|MYG_PHYCD - 3.2e-60 193.7 2.0 3.6e-60 193.5 2.0 1.0 1 0 0 1 1 1 1 - +HBA2_GALCR - sp|P02185|MYG_PHYCD - 4.2e-60 193.3 1.5 4.7e-60 193.2 1.5 1.0 1 0 0 1 1 1 1 - +HBA_AILME - sp|P02185|MYG_PHYCD - 5.7e-60 192.9 0.5 6.3e-60 192.7 0.5 1.0 1 0 0 1 1 1 1 - +HBA_FRAPO - sp|P02185|MYG_PHYCD - 9.6e-60 192.2 0.6 1.1e-59 192.0 0.6 1.0 1 0 0 1 1 1 1 - +HBA_ANSSE - sp|P02185|MYG_PHYCD - 1e-59 192.1 0.9 1.1e-59 191.9 0.9 1.0 1 0 0 1 1 1 1 - +HBA_PHACO - sp|P02185|MYG_PHYCD - 2.2e-59 191.0 0.6 2.4e-59 190.9 0.6 1.0 1 0 0 1 1 1 1 - +HBA_PROLO - sp|P02185|MYG_PHYCD - 2.4e-59 190.9 0.2 2.6e-59 190.7 0.2 1.0 1 0 0 1 1 1 1 - +HBA_ERIEU - sp|P02185|MYG_PHYCD - 4e-59 190.1 0.3 4.5e-59 190.0 0.3 1.0 1 0 0 1 1 1 1 - +HBA_PAGLA - sp|P02185|MYG_PHYCD - 4.2e-59 190.1 0.9 4.7e-59 189.9 0.9 1.0 1 0 0 1 1 1 1 - +HBA_TRIOC - sp|P02185|MYG_PHYCD - 1.6e-58 188.2 0.6 1.8e-58 188.0 0.6 1.0 1 0 0 1 1 1 1 - +HBAD_CHLME - sp|P02185|MYG_PHYCD - 3.9e-58 186.9 0.9 4.3e-58 186.8 0.9 1.0 1 0 0 1 1 1 1 - +HBA_COLLI - sp|P02185|MYG_PHYCD - 3.5e-57 183.8 0.4 3.9e-57 183.7 0.4 1.0 1 0 0 1 1 1 1 - +HBBL_RANCA - sp|P02185|MYG_PHYCD - 5.8e-57 183.1 0.2 6.5e-57 183.0 0.2 1.0 1 0 0 1 1 1 1 - +HBAD_PASMO - sp|P02185|MYG_PHYCD - 6.3e-56 179.8 0.1 7e-56 179.6 0.1 1.0 1 0 0 1 1 1 1 - +HBAZ_HORSE - sp|P02185|MYG_PHYCD - 9.4e-56 179.2 0.1 1e-55 179.1 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_XENTR - sp|P02185|MYG_PHYCD - 4e-55 177.2 0.7 4.4e-55 177.0 0.7 1.0 1 0 0 1 1 1 1 - +MYG_PROGU - sp|P02185|MYG_PHYCD - 9.5e-55 176.0 1.6 1.1e-54 175.8 1.6 1.0 1 0 0 1 1 1 1 - +MYG_LYCPI - sp|P02185|MYG_PHYCD - 2.6e-54 174.6 5.3 2.9e-54 174.4 5.3 1.0 1 0 0 1 1 1 1 - +MYG_MOUSE - sp|P02185|MYG_PHYCD - 1.1e-53 172.5 1.6 1.2e-53 172.4 1.6 1.0 1 0 0 1 1 1 1 - +MYG_SAISC - sp|P02185|MYG_PHYCD - 1.2e-53 172.4 4.3 1.4e-53 172.2 4.3 1.0 1 0 0 1 1 1 1 - +MYG_HORSE - sp|P02185|MYG_PHYCD - 1.5e-53 172.1 4.2 1.7e-53 171.9 4.2 1.0 1 0 0 1 1 1 1 - +MYG_ESCGI - sp|P02185|MYG_PHYCD - 5e-53 170.4 5.7 5.6e-53 170.2 5.7 1.0 1 0 0 1 1 1 1 - +HBA4_SALIR - sp|P02185|MYG_PHYCD - 3.8e-52 167.5 0.1 4.2e-52 167.4 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_TRICR - sp|P02185|MYG_PHYCD - 5.2e-50 160.6 0.0 5.8e-50 160.5 0.0 1.0 1 0 0 1 1 1 1 - +MYG_MUSAN - sp|P02185|MYG_PHYCD - 2.1e-45 145.7 0.4 2.3e-45 145.5 0.4 1.0 1 0 0 1 1 1 1 - +HBB_MANSP - sp|P02024|HBB_GORGO - 1.4e-71 230.4 0.0 1.5e-71 230.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_URSMA - sp|P02024|HBB_GORGO - 5.9e-71 228.4 0.1 6.6e-71 228.2 0.1 1.0 1 0 0 1 1 1 1 - +HBB_RABIT - sp|P02024|HBB_GORGO - 5.8e-70 225.2 0.3 6.4e-70 225.0 0.3 1.0 1 0 0 1 1 1 1 - +HBB_SUNMU - sp|P02024|HBB_GORGO - 2e-69 223.4 0.0 2.2e-69 223.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_CALAR - sp|P02024|HBB_GORGO - 2.4e-69 223.1 0.1 2.7e-69 223.0 0.1 1.0 1 0 0 1 1 1 1 - +HBB_EQUHE - sp|P02024|HBB_GORGO - 3.4e-69 222.7 0.1 3.8e-69 222.5 0.1 1.0 1 0 0 1 1 1 1 - +HBB_COLLI - sp|P02024|HBB_GORGO - 4.2e-69 222.4 0.0 4.7e-69 222.2 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TACAC - sp|P02024|HBB_GORGO - 7.3e-69 221.6 0.1 8.1e-69 221.4 0.1 1.0 1 0 0 1 1 1 1 - +HBE_PONPY - sp|P02024|HBB_GORGO - 1.3e-68 220.8 0.1 1.5e-68 220.6 0.1 1.0 1 0 0 1 1 1 1 - +HBB_SPECI - sp|P02024|HBB_GORGO - 3e-68 219.6 0.4 3.3e-68 219.5 0.4 1.0 1 0 0 1 1 1 1 - +HBB_SPETO - sp|P02024|HBB_GORGO - 5.3e-68 218.8 0.2 5.9e-68 218.7 0.2 1.0 1 0 0 1 1 1 1 - +HBB_ORNAN - sp|P02024|HBB_GORGO - 1.3e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TRIIN - sp|P02024|HBB_GORGO - 1.4e-67 217.5 0.0 1.5e-67 217.3 0.0 1.0 1 0 0 1 1 1 1 - +HBB_LARRI - sp|P02024|HBB_GORGO - 2.5e-67 216.6 0.0 2.8e-67 216.5 0.0 1.0 1 0 0 1 1 1 1 - +HBB_TUPGL - sp|P02024|HBB_GORGO - 6.5e-66 212.0 0.0 7.2e-66 211.9 0.0 1.0 1 0 0 1 1 1 1 - +HBB1_VAREX - sp|P02024|HBB_GORGO - 6e-65 208.9 0.0 6.6e-65 208.8 0.0 1.0 1 0 0 1 1 1 1 - +HBA_MESAU - sp|P02024|HBB_GORGO - 1.9e-62 200.8 0.3 2.1e-62 200.6 0.3 1.0 1 0 0 1 1 1 1 - +HBA_PONPY - sp|P02024|HBB_GORGO - 1.9e-61 197.6 0.7 2.1e-61 197.4 0.7 1.0 1 0 0 1 1 1 1 - +HBBL_RANCA - sp|P02024|HBB_GORGO - 2.7e-61 197.0 0.1 3.1e-61 196.9 0.1 1.0 1 0 0 1 1 1 1 - +HBA_MACFA - sp|P02024|HBB_GORGO - 3.6e-61 196.6 0.3 4.1e-61 196.5 0.3 1.0 1 0 0 1 1 1 1 - +HBA_MACSI - sp|P02024|HBB_GORGO - 5.2e-61 196.1 0.2 5.8e-61 196.0 0.2 1.0 1 0 0 1 1 1 1 - +HBA_AILME - sp|P02024|HBB_GORGO - 9e-61 195.4 0.1 1e-60 195.2 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_XENTR - sp|P02024|HBB_GORGO - 1.6e-60 194.6 0.4 1.8e-60 194.4 0.4 1.0 1 0 0 1 1 1 1 - +HBA2_GALCR - sp|P02024|HBB_GORGO - 2.7e-60 193.8 0.5 3e-60 193.7 0.5 1.0 1 0 0 1 1 1 1 - +HBA_FRAPO - sp|P02024|HBB_GORGO - 3e-60 193.7 0.4 3.3e-60 193.5 0.4 1.0 1 0 0 1 1 1 1 - +HBA_PHACO - sp|P02024|HBB_GORGO - 3e-60 193.7 0.4 3.4e-60 193.5 0.4 1.0 1 0 0 1 1 1 1 - +HBA2_BOSMU - sp|P02024|HBB_GORGO - 3.2e-60 193.6 0.3 3.5e-60 193.4 0.3 1.0 1 0 0 1 1 1 1 - +HBA_ERIEU - sp|P02024|HBB_GORGO - 1e-59 191.9 0.1 1.1e-59 191.8 0.1 1.0 1 0 0 1 1 1 1 - +HBA_PROLO - sp|P02024|HBB_GORGO - 1.4e-59 191.5 0.0 1.5e-59 191.4 0.0 1.0 1 0 0 1 1 1 1 - +HBA_ANSSE - sp|P02024|HBB_GORGO - 1.6e-59 191.3 0.4 1.8e-59 191.1 0.4 1.0 1 0 0 1 1 1 1 - +HBA_PAGLA - sp|P02024|HBB_GORGO - 1.7e-59 191.2 0.5 1.9e-59 191.1 0.5 1.0 1 0 0 1 1 1 1 - +HBA_TRIOC - sp|P02024|HBB_GORGO - 1.1e-58 188.6 0.5 1.2e-58 188.4 0.5 1.0 1 0 0 1 1 1 1 - +HBAD_CHLME - sp|P02024|HBB_GORGO - 2.9e-58 187.2 0.6 3.2e-58 187.1 0.6 1.0 1 0 0 1 1 1 1 - +HBAZ_HORSE - sp|P02024|HBB_GORGO - 3.4e-58 187.0 0.1 3.8e-58 186.9 0.1 1.0 1 0 0 1 1 1 1 - +HBA_COLLI - sp|P02024|HBB_GORGO - 6.7e-58 186.1 0.2 7.4e-58 185.9 0.2 1.0 1 0 0 1 1 1 1 - +HBAD_PASMO - sp|P02024|HBB_GORGO - 8.9e-58 185.7 0.1 9.9e-58 185.5 0.1 1.0 1 0 0 1 1 1 1 - +MYG_LYCPI - sp|P02024|HBB_GORGO - 1.1e-56 182.1 1.9 1.3e-56 181.9 1.9 1.0 1 0 0 1 1 1 1 - +MYG_SAISC - sp|P02024|HBB_GORGO - 1.1e-56 182.1 1.1 1.3e-56 181.9 1.1 1.0 1 0 0 1 1 1 1 - +MYG_ESCGI - sp|P02024|HBB_GORGO - 2.5e-56 181.0 1.7 2.8e-56 180.8 1.7 1.0 1 0 0 1 1 1 1 - +MYG_PROGU - sp|P02024|HBB_GORGO - 3.2e-56 180.6 0.2 3.6e-56 180.4 0.2 1.0 1 0 0 1 1 1 1 - +MYG_HORSE - sp|P02024|HBB_GORGO - 9.5e-56 179.1 1.0 1.1e-55 178.9 1.0 1.0 1 0 0 1 1 1 1 - +MYG_MOUSE - sp|P02024|HBB_GORGO - 1.8e-55 178.2 0.3 2e-55 178.0 0.3 1.0 1 0 0 1 1 1 1 - +HBA4_SALIR - sp|P02024|HBB_GORGO - 3.4e-55 177.3 0.1 3.8e-55 177.1 0.1 1.0 1 0 0 1 1 1 1 - +HBB2_TRICR - sp|P02024|HBB_GORGO - 1.8e-53 171.7 0.0 2e-53 171.6 0.0 1.0 1 0 0 1 1 1 1 - +MYG_MUSAN - sp|P02024|HBB_GORGO - 1e-44 143.3 0.3 1.1e-44 143.2 0.3 1.0 1 0 0 1 1 1 1 - +# +# Program: jackhmmer +# Version: 3.1b2 (February 2015) +# Pipeline mode: SEARCH +# Query file: /tmp/tmphb1nFG/files/000/dataset_1.dat +# Target file: /tmp/tmphb1nFG/files/000/dataset_2.dat +# Option settings: jackhmmer -N 5 --tblout /tmp/tmphb1nFG/files/000/dataset_4.dat --domtblout /tmp/tmphb1nFG/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --fast --hand --symfrac 0.5 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmphb1nFG/files/000/dataset_1.dat /tmp/tmphb1nFG/files/000/dataset_2.dat +# Current dir: /tmp/tmphb1nFG/job_working_directory/000/3 +# Date: Sat Jun 25 19:33:04 2016 +# [ok]