Mercurial > repos > iuc > hmmer_hmmscan

comparison test-data/MADE1.out.tblout @ 4:01219a31c48e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:52:41 -0400
parents 216b19e6c317
children be7097d6e3ff
comparison
equal deleted inserted replaced
3:1a83249ddfff 4:01219a31c48e
1 # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- 1 # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
2 # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target 2 # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target
3 #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- 3 #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- ---------------------
4 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 7.1e-18 51.5 28.5 2e-12 34.0 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 4 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 5.7e-18 51.8 27.9 2e-12 34.1 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
5 # 5 #
6 # Program: hmmscan 6 # Program: hmmscan
7 # Version: 3.1b1 (May 2013) 7 # Version: 3.2 (June 2018)
8 # Pipeline mode: SCAN 8 # Pipeline mode: SCAN
9 # Query file: test-data/dna_target.fa 9 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat
10 # Target file: test-data/MADE1.hmm 10 # Target file: localref.hmm
11 # Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa 11 # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat
12 # Current dir: /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer 12 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working
13 # Date: Tue Feb 10 14:40:35 2015 13 # Date: Fri Jun 8 12:17:53 2018
14 # [ok] 14 # [ok]