Mercurial > repos > iuc > hmmer_hmmscan
diff test-data/MADE1.nhmmscan_out.aliscoresout @ 3:1a83249ddfff draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6
| author | iuc |
|---|---|
| date | Sat, 07 Apr 2018 03:51:55 -0400 |
| parents | |
| children | 01219a31c48e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/MADE1.nhmmscan_out.aliscoresout Sat Apr 07 03:51:55 2018 -0400 @@ -0,0 +1,17 @@ +# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target +#------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 1.2e-10 38.6 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 7.8e-08 29.6 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 1.2e-07 28.9 6.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 7.2e-06 23.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +# +# Program: hmmscan +# Version: 3.1b2 (February 2015) +# Pipeline mode: SCAN +# Query file: /tmp/tmpc_c3amjg/files/000/dataset_2.dat +# Target file: /tmp/tmpc_c3amjg/files/000/dataset_1.dat +# Option settings: nhmmscan --tblout /tmp/tmpc_c3amjg/files/000/dataset_4.dat --dfamtblout /tmp/tmpc_c3amjg/files/000/dataset_5.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 /tmp/tmpc_c3amjg/files/000/dataset_1.dat /tmp/tmpc_c3amjg/files/000/dataset_2.dat +# Current dir: /tmp/tmpc_c3amjg/job_working_directory/000/3/working +# Date: Wed Apr 4 16:58:45 2018 +# [ok]