Mercurial > repos > iuc > hmmer_hmmscan

diff hmmscan.xml @ 8:347a1f935f4c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:23:10 +0000
parents be072920a53e
children 4a54e4c9188b
line wrap: on
line diff
--- a/hmmscan.xml	Wed Jul 21 14:10:08 2021 +0000
+++ b/hmmscan.xml	Mon Nov 06 20:23:10 2023 +0000
@@ -1,9 +1,10 @@
 <?xml version="1.0"?>
-<tool id="hmmer_hmmscan" name="hmmscan" version="@TOOL_VERSION@+galaxy0">
+<tool id="hmmer_hmmscan" name="hmmscan" version="@TOOL_VERSION@+galaxy1">
   <description>search protein sequence(s) against a protein profile database</description>
   <macros>
     <import>macros.xml</import>
   </macros>
+  <expand macro="bio_tools"/>
   <expand macro="requirements"/>
   <expand macro="stdio"/>
   <command><![CDATA[
@@ -13,7 +14,7 @@
 
 @OFORMAT_WITH_OPTS@
 @THRESHOLDS@
-@CUT@
+@THRESHOLDS_DOM@
 @ACCEL_HEUR@
 @ADV_OPTS@
 @CPU@
@@ -28,8 +29,7 @@
     <!-- todo use Galaxy features like data libraries/data tables/??? -->
     <param name="seqfile" type="data" format="fasta" label="Sequence file" help="Please note this file should have a length less than 100K."/>
     <expand macro="oformat_with_opts_dom_pfam"/>
-    <expand macro="thresholds_xml"/>
-    <expand macro="cut"/>
+    <expand macro="thresholds_cut_dom_xml"/>
     <expand macro="accel_heur_xml"/>
     <expand macro="adv_opts"/>
     <expand macro="seed"/>