Mercurial > repos > iuc > hmmer_hmmsearch

comparison test-data/cut_ga_test.out @ 8:3bb58751f4ee draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:22:49 +0000
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7:d753d9169482 8:3bb58751f4ee
1 # hmmsearch :: search profile(s) against a sequence database
2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
3 # Copyright (C) 2020 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query HMM file: /tmp/saskia/tmpug0qcpsy/files/9/9/b/dataset_99bcd3c6-6d16-4e09-9878-7117f928bb24.dat
7 # target sequence database: /tmp/saskia/tmpug0qcpsy/files/f/9/9/dataset_f99d0a82-fcb5-4323-b2d4-8b218045c72e.dat
8 # max ASCII text line length: unlimited
9 # model-specific thresholding: GA cutoffs
10 # Vit filter P threshold: <= 0.001
11 # Fwd filter P threshold: <= 1e-05
12 # random number seed set to: 4
13 # number of worker threads: 0
14 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
15
16 Query: fn3 [M=86]
17 Accession: PF00041.13
18 Description: Fibronectin type III domain
19 Scores for complete sequences (score includes all domains):
20 --- full sequence --- --- best 1 domain --- -#dom-
21 E-value score bias E-value score bias exp N Sequence Description
22 ------- ------ ----- ------- ------ ----- ---- -- -------- -----------
23
24 [No hits detected that satisfy reporting thresholds]
25
26
27 Domain annotation for each sequence (and alignments):
28
29 [No targets detected that satisfy reporting thresholds]
30
31
32 Internal pipeline statistics summary:
33 -------------------------------------
34 Query model(s): 1 (86 nodes)
35 Target sequences: 2 (301 residues searched)
36 Passed MSV filter: 0 (0); expected 0.0 (0.02)
37 Passed bias filter: 0 (0); expected 0.0 (0.02)
38 Passed Vit filter: 0 (0); expected 0.0 (0.001)
39 Passed Fwd filter: 0 (0); expected 0.0 (1e-05)
40 Initial search space (Z): 2 [actual number of targets]
41 Domain search space (domZ): 0 [number of targets reported over threshold]
42 # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
43 # Mc/sec: 144.45
44 //
45 [ok]