Mercurial > repos > iuc > hmmer_hmmsearch
diff test-data/MADE1.out.tblout @ 4:6867ed975e25 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
| author | iuc |
|---|---|
| date | Mon, 11 Jun 2018 15:51:39 -0400 |
| parents | 1dde27bbdcba |
| children | b774ae8e1609 |
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--- a/test-data/MADE1.out.tblout Sat Apr 07 03:49:37 2018 -0400 +++ b/test-data/MADE1.out.tblout Mon Jun 11 15:51:39 2018 -0400 @@ -1,14 +1,14 @@ # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- -MADE1 DF0000629.2 humanchr1/239220001-239550000 - 7.1e-18 51.5 28.5 2e-12 34.0 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 DF0000629.2 humanchr1/239220001-239550000 - 5.7e-18 51.8 27.9 2e-12 34.1 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan -# Version: 3.1b1 (May 2013) +# Version: 3.2 (June 2018) # Pipeline mode: SCAN -# Query file: test-data/dna_target.fa -# Target file: test-data/MADE1.hmm -# Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa -# Current dir: /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer -# Date: Tue Feb 10 14:40:35 2015 +# Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Target file: localref.hmm +# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat +# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working +# Date: Fri Jun 8 12:17:53 2018 # [ok]