diff test-data/globins-45-align.sto @ 5:b774ae8e1609 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:27:07 -0400
parents 1dde27bbdcba
children
line wrap: on
line diff
--- a/test-data/globins-45-align.sto	Mon Jun 11 15:51:39 2018 -0400
+++ b/test-data/globins-45-align.sto	Tue Jun 16 05:27:07 2020 -0400
@@ -13,47 +13,47 @@
 MYG_MOUSE          g--LSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKK-KGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKYKelgfqg
 #=GR MYG_MOUSE  PP 8..89***************************************************************************.99******************************************************************7******
 MYG_MUSAN          v------DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKNKS-LGELKDTADIKAQADTVLSALGNIVKK-KGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEYKaanfqg
-#=GR MYG_MUSAN  PP 7......89***************************************9877.89*************************.99****************************************************************997******
+#=GR MYG_MUSAN  PP 7......89***************************************9877.99*************************.99****************************************************************997******
 HBA_AILME          .-VLSPADKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTTAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKYR......
-#=GR HBA_AILME  PP ..69********************************************.9**.....9***********************9.******************************************************************7......
+#=GR HBA_AILME  PP ..69********************************************.***.....9************************.******************************************************************7......
 HBA_PROLO          .-VLSPADKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTLAVGHLD-DLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKYR......
-#=GR HBA_PROLO  PP ..69********************************************.9**.....9***********************9.******************************************************************7......
+#=GR HBA_PROLO  PP ..69********************************************.***.....9************************.******************************************************************7......
 HBA_PAGLA          .-VLSSADKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHF-DLS-----HGSAQVKAHGKKVADALTLAVGHLE-DLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKYR......
 #=GR HBA_PAGLA  PP ..69********************************************.***.....***********************98.9*****************************************************************7......
 HBA_MACFA          .-VLSPADKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
-#=GR HBA_MACFA  PP ..69********************************************.***.....************************9.******************************************************************7......
+#=GR HBA_MACFA  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_MACSI          .-VLSPADKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
-#=GR HBA_MACSI  PP ..69********************************************.***.....************************9.******************************************************************7......
+#=GR HBA_MACSI  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_PONPY          .-VLSPADKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKDHGKKVADALTNAVAHVD-DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
-#=GR HBA_PONPY  PP ..69********************************************.***.....************************9.******************************************************************7......
+#=GR HBA_PONPY  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA2_GALCR         .-VLSPTDKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSTQVKGHGKKVADALTNAVLHVD-DMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKYR......
-#=GR HBA2_GALCR PP ..69********************************************.***.....************************9.******************************************************************7......
+#=GR HBA2_GALCR PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_MESAU          .-VLSAKDKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHF-DVS-----HGSAQVKGHGKKVADALTNAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKYR......
-#=GR HBA_MESAU  PP ..69********************************************.888.....************************9.******************************************************************7......
+#=GR HBA_MESAU  PP ..69********************************************.888.....*************************.******************************************************************7......
 HBA2_BOSMU         .-VLSAADKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGAKVAAALTKAVGHLD-DLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKYR......
-#=GR HBA2_BOSMU PP ..69********************************************.***.....************************9.******************************************************************7......
+#=GR HBA2_BOSMU PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_ERIEU          .-VLSATDKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHF-DLN-----PGSAQVKGHGKKVADALTTAVNNLD-DVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKYR......
-#=GR HBA_ERIEU  PP ..69********************************************.999.....9***********************9.9*****************************************************************7......
+#=GR HBA_ERIEU  PP ..69********************************************.999.....9************************.******************************************************************7......
 HBA_FRAPO          .-VLSAADKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQVKGHGKKVVAALIEAANHID-DIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKYR......
-#=GR HBA_FRAPO  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+#=GR HBA_FRAPO  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_PHACO          .-VLSAADKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQIKGHGKKVVAALIEAVNHID-DITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKYR......
-#=GR HBA_PHACO  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+#=GR HBA_PHACO  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBA_TRIOC          .-VLSANDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHF-DLH-----HGSAQIKAHGKKVVGALIEAVNHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKYR......
-#=GR HBA_TRIOC  PP ..69********************************************.999.....************************9.9*****************************************************************7......
+#=GR HBA_TRIOC  PP ..69********************************************.999.....*************************.******************************************************************7......
 HBA_ANSSE          .-VLSAADKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHF-DLQ-----PGSAQIKAHGKKVAAALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKYR......
-#=GR HBA_ANSSE  PP ..69********************************************.999.....9***********************9.9*****************************************************************7......
+#=GR HBA_ANSSE  PP ..69********************************************.999.....9************************.******************************************************************7......
 HBA_COLLI          .-VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHF-DLS-----HGSAQIKGHGKKVAEALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR......
-#=GR HBA_COLLI  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+#=GR HBA_COLLI  PP ..69********************************************.***.....*************************.******************************************************************7......
 HBAD_CHLME         m--LTADDKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHF-DLH-----PGSEQVRGHGKKVAAALGNAVKSLD-NLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKYR......
 #=GR HBAD_CHLME PP 6..89*******************************************.999.....9************************.******************************************************************7......
 HBAD_PASMO         m--LTAEDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHF-DLS-----QGSDQIRGHGKKVVAALSNAIKNLD-NLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKYR......
-#=GR HBAD_PASMO PP 6..99*******************************************.9**.....9************************.******************************************************************7......
+#=GR HBAD_PASMO PP 6..99*******************************************.***.....9************************.******************************************************************7......
 HBAZ_HORSE         s--LTKAERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHF-DLH-----EGSPQLRAHGSKVAAAVGDAVKSID-NVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKYR......
 #=GR HBAZ_HORSE PP 6..89*******************************************.999.....9************************.******************************************************************7......
 HBA4_SALIR         s--LSAKDKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASVA-----PGSAPVKKHGITIMNQIDDCVGHMD-DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKYR......
-#=GR HBA4_SALIR PP 6..9********************************************7776.....9************************.9*****************************************************************7......
+#=GR HBA4_SALIR PP 6..9********************************************7777.....9************************.9*****************************************************************7......
 HBB_ORNAN          .VHLSGGEKSAVTNLWGKV--NINELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLD-DLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKYH......
-#=GR HBB_ORNAN  PP .69****************..************************************************************9.******************************************************************7......
+#=GR HBB_ORNAN  PP .69****************..*************************************************************.******************************************************************7......
 HBB_TACAC          .VHLSGSEKTAVTNLWGHV--NVNELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLD-NLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKYH......
 #=GR HBB_TACAC  PP .69****************..*************************************************************.******************************************************************7......
 HBE_PONPY          .VHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMD-NLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH......
@@ -67,11 +67,11 @@
 HBB_SUNMU          .VHLSGEEKACVTGLWGKV--NEDEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKYH......
 #=GR HBB_SUNMU  PP .69****************..99***********************************************************.******************************************************************7......
 HBB_CALAR          .VHLTGEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLD-NLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKYH......
-#=GR HBB_CALAR  PP .689***************..*************************************************************.******************************************************************7......
+#=GR HBB_CALAR  PP .69****************..*************************************************************.******************************************************************7......
 HBB_MANSP          .VHLTPEEKTAVTTLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLD-NLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
 #=GR HBB_MANSP  PP .69****************..*************************************************************.******************************************************************7......
 HBB_URSMA          .VHLTGEEKSLVTGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLD-NLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
-#=GR HBB_URSMA  PP .689***************..*************************************************************.******************************************************************7......
+#=GR HBB_URSMA  PP .69****************..*************************************************************.******************************************************************7......
 HBB_RABIT          .VHLSSEEKSAVTALWGKV--NVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
 #=GR HBB_RABIT  PP .69****************..*************************************************************.******************************************************************7......
 HBB_TUPGL          .VHLSGEEKAAVTGLWGKV--DLEKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKYH......
@@ -79,15 +79,15 @@
 HBB_TRIIN          .VHLTPEEKALVIGLWAKV--NVKEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLE-DLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKYH......
 #=GR HBB_TRIIN  PP .69****************..***********************************************************98.9*****************************************************************7......
 HBB_COLLI          v-HWSAEEKQLITSIWGKV--NVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD-NIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH......
-#=GR HBB_COLLI  PP 5.779**************..*************************************************************.******************************************************************7......
+#=GR HBB_COLLI  PP 5.789**************..*************************************************************.******************************************************************7......
 HBB_LARRI          v-HWSAEEKQLITGLWGKV--NVADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLD-NIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKYH......
-#=GR HBB_LARRI  PP 5.779**************..*************************************************************.******************************************************************7......
+#=GR HBB_LARRI  PP 5.789**************..*************************************************************.******************************************************************7......
 HBB1_VAREX         v-HWTAEEKQLICSLWGKI--DVGLIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLD-NIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRYH......
 #=GR HBB1_VAREX PP 6.6799*************..*************************************************************.******************************************************************7......
 HBB2_XENTR         v-HWTAEEKATIASVWGKV--DIEQDGHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLD-DVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY-f.....
-#=GR HBB2_XENTR PP 6.6799*************..************************************************************9.9*************************************************************9988.9.....
+#=GR HBB2_XENTR PP 6.6799*************..*************************************************************.**************************************************************9988.9.....
 HBBL_RANCA         v-HWTAEEKAVINSVWQKV--DVEQDGHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLD-DVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSYH......
-#=GR HBBL_RANCA PP 6.6799*************..************************************************************9.9*****************************************************************7......
+#=GR HBBL_RANCA PP 6.6799*************..*************************************************************.******************************************************************7......
 HBB2_TRICR         .VHLTAEDRKEIAAILGKV--NVDSLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLD-NLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY-......
 #=GR HBB2_TRICR PP .69****************..*************************************************************.**************************************************************9988.......
 #=GC PP_cons       .679*****************************************************************************99******************************************************************7......