Mercurial > repos > iuc > hmmer_hmmsearch

diff hmmsearch.xml @ 9:df7a52791be9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author iuc
date Sun, 25 Feb 2024 18:31:05 +0000
parents 3bb58751f4ee
children
line wrap: on
line diff
--- a/hmmsearch.xml	Mon Nov 06 20:22:49 2023 +0000
+++ b/hmmsearch.xml	Sun Feb 25 18:31:05 2024 +0000
@@ -1,13 +1,12 @@
 <?xml version="1.0"?>
-<tool id="hmmer_hmmsearch" name="hmmsearch" version="@TOOL_VERSION@+galaxy1">
+<tool id="hmmer_hmmsearch" name="hmmsearch" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>search profile(s) against a sequence database</description>
     <macros>
     <import>macros.xml</import>
   </macros>
   <expand macro="bio_tools"/>
   <expand macro="requirements"/>
-  <expand macro="stdio"/>
-  <command><![CDATA[
+  <command detect_errors="aggressive"><![CDATA[
 @ADDTHREADS@
 hmmsearch
 
@@ -42,7 +41,7 @@
       <param name="seqdb" value="uniprot_matches.fasta"/>
       <expand macro="oformat_test" />
       <expand macro="seed_test" />
-      <output name="output" file="uniprot_globins_match.out" lines_diff="20">
+      <output name="output" file="uniprot_globins_match.out" lines_diff="24">
           <expand macro="assert_out" tool="hmmsearch"/>
       </output>
       <output name="domtblout" file="globins.domtblout" lines_diff="16">
@@ -94,12 +93,10 @@
       <expand macro="oformat_test" />
       <param name="oformat" value=""/>
       <expand macro="seed_test" />
-      <output name="output" file="cut_ga_test.out" lines_diff="10">
+      <output name="output" file="cut_ga_test.out" lines_diff="14">
           <expand macro="assert_out" tool="hmmsearch"/>
       </output>
     </test>
-
-
   </tests>
   <help><![CDATA[
 @HELP_PRE@