Mercurial > repos > iuc > hmmer_hmmsearch

view test-data/MADE1.out.domtblout @ 5:b774ae8e1609 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:27:07 -0400
parents 6867ed975e25
children d753d9169482
line wrap: on
line source

#                                                                                      --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession    tlen query name                    accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#-------------------  ---------- -----          -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
MADE1                DF0000629.2    80 humanchr1/239220001-239550000 -          330000   9.3e-18   51.2  26.3   1   4   2.4e-10   2.4e-10   27.4   0.6     1    43 174456 174498 174456 174520 0.93 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2    80 humanchr1/239220001-239550000 -          330000   9.3e-18   51.2  26.3   2   4         1         1   -8.4   5.8    12    79 197274 197341 197272 197342 0.86 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2    80 humanchr1/239220001-239550000 -          330000   9.3e-18   51.2  26.3   3   4   1.3e-12   1.3e-12   34.8   0.7     2    80 302388 302466 302387 302466 0.87 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                DF0000629.2    80 humanchr1/239220001-239550000 -          330000   9.3e-18   51.2  26.3   4   4     0.033     0.033    1.4   0.4    27    74 304060 304106 304029 304108 0.71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.3 (Nov 2019)
# Pipeline mode:   SCAN
# Query file:      /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat
# Target file:     localref.hmm
# Option settings: hmmscan --tblout /tmp/tmpqydies2m/files/1/d/a/dataset_1da10e33-3e1c-48fc-abfb-7e3c263ec0df.dat --domtblout /tmp/tmpqydies2m/files/7/2/3/dataset_723f3cf1-e0de-4616-aec7-dd16680f3be3.dat --pfamtblout /tmp/tmpqydies2m/files/7/3/4/dataset_734c7f25-0a22-431b-9a7a-58849fcd6009.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat 
# Current dir:     /tmp/tmpqydies2m/job_working_directory/000/8/working
# Date:            Thu May 14 18:53:22 2020
# [ok]