Mercurial > repos > iuc > hmmer_jackhmmer
diff jackhmmer.xml @ 3:036df14999e8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6
author | iuc |
---|---|
date | Sat, 07 Apr 2018 03:48:57 -0400 |
parents | d4fda6672a64 |
children | 793967b6ae8a |
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--- a/jackhmmer.xml Wed Apr 04 14:00:07 2018 -0400 +++ b/jackhmmer.xml Sat Apr 07 03:48:57 2018 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hmmer_jackhmmer" name="jackhmmer" version="@WRAPPER_VERSION@.0"> +<tool id="hmmer_jackhmmer" name="jackhmmer" version="@TOOL_VERSION@"> <description>iteratively search a protein sequence against a protein database (PSIBLAST-like)</description> <macros> <import>macros.xml</import> @@ -23,10 +23,10 @@ @CPU@ @SEED@ -$seqfile -$seqdb -> $output - ]]></command> +'$seqfile' +'$seqdb' +> '$output' + ]]></command> <inputs> <param name="seqfile" type="data" format="fasta" label="Protein sequence to search with"/> <!-- todo use Galaxy features like data libraries/data tables/??? --> @@ -45,11 +45,11 @@ <expand macro="seed"/> </inputs> <outputs> - <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> - <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> + <data name="output" format="txt" label="PHMMER search of $seqfile.name in $seqdb.name"/> + <data name="tblout" format="txt" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> <filter>oformat and 'tblout' in oformat</filter> </data> - <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> + <data name="domtblout" format="txt" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> <filter>oformat and 'domtblout' in oformat</filter> </data> </outputs> @@ -91,6 +91,6 @@ @SEED_HELP@ @ATTRIBUTION@ -]]></help> + ]]></help> <expand macro="citation"/> </tool>