Mercurial > repos > iuc > hmmer_nhmmer

comparison test-data/MADE1.nhmmscan_out.aliscoresout @ 4:be0cc39776f9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:52:05 -0400
parents c8e81e43bff1
children
comparison
equal deleted inserted replaced
3:c8e81e43bff1 4:be0cc39776f9
1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target 1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target
2 #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- 2 #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
3 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 1.2e-10 38.6 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 3 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 8.7e-11 39.2 7.4 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
4 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 7.8e-08 29.6 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 4 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 6.4e-08 30.0 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
5 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 1.2e-07 28.9 6.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 5 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 77 302466 302390 302466 302387 80 - 9.3e-08 29.5 6.1 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
6 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 7.2e-06 23.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 6 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 6.3e-06 23.7 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
7 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.3 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 7 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 72 304073 304104 304053 304109 80 + 1.4 6.5 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
8 # 8 #
9 # Program: hmmscan 9 # Program: hmmscan
10 # Version: 3.1b2 (February 2015) 10 # Version: 3.2 (June 2018)
11 # Pipeline mode: SCAN 11 # Pipeline mode: SCAN
12 # Query file: /tmp/tmpc_c3amjg/files/000/dataset_2.dat 12 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_41.dat
13 # Target file: /tmp/tmpc_c3amjg/files/000/dataset_1.dat 13 # Target file: localref.hmm
14 # Option settings: nhmmscan --tblout /tmp/tmpc_c3amjg/files/000/dataset_4.dat --dfamtblout /tmp/tmpc_c3amjg/files/000/dataset_5.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 /tmp/tmpc_c3amjg/files/000/dataset_1.dat /tmp/tmpc_c3amjg/files/000/dataset_2.dat 14 # Option settings: nhmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_43.dat --dfamtblout /tmp/tmpp4O0Ju/files/000/dataset_44.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_41.dat
15 # Current dir: /tmp/tmpc_c3amjg/job_working_directory/000/3/working 15 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/33/working
16 # Date: Wed Apr 4 16:58:45 2018 16 # Date: Fri Jun 8 12:19:16 2018
17 # [ok] 17 # [ok]