Mercurial > repos > iuc > hmmer_nhmmer

comparison nhmmer.xml @ 9:54b92ae4f75b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author iuc
date Sun, 25 Feb 2024 18:34:55 +0000
parents 2ec5e1ad1da7
children
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8:2ec5e1ad1da7 9:54b92ae4f75b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy1"> 2 <tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>search a DNA model or alignment against a DNA database (BLASTN-like)</description> 3 <description>search a DNA model or alignment against a DNA database (BLASTN-like)</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="bio_tools"/> 7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <command detect_errors="aggressive"><![CDATA[
10 <command><![CDATA[
11 @ADDTHREADS@ 10 @ADDTHREADS@
12 nhmmer 11 nhmmer
13 12
14 @OFORMAT_WITH_OPTS@ 13 @OFORMAT_WITH_OPTS@
15 @HSSI@ 14 @HSSI@
46 <param name="hmmfile" value="MADE1.hmm"/> 45 <param name="hmmfile" value="MADE1.hmm"/>
47 <param name="seqfile" value="dna_target.fa"/> 46 <param name="seqfile" value="dna_target.fa"/>
48 <expand macro="oformat_test" /> 47 <expand macro="oformat_test" />
49 <param name="oformat" value="tblout,dfamtblout,aliscoresout"/> 48 <param name="oformat" value="tblout,dfamtblout,aliscoresout"/>
50 <expand macro="seed_test" /> 49 <expand macro="seed_test" />
51 <output name="output" file="nhmmer.out" lines_diff="16"> 50 <output name="output" file="nhmmer.out" lines_diff="18">
52 <expand macro="assert_out" tool="nhmmer"/> 51 <expand macro="assert_out" tool="nhmmer"/>
53 </output> 52 </output>
54 <output name="tblout" file="nhmmer.out.tblout" lines_diff="12"> 53 <output name="tblout" file="nhmmer.out.tblout" lines_diff="12">
55 <expand macro="assert_tblout" tool="nhmmer"/> 54 <expand macro="assert_tblout" tool="nhmmer"/>
56 </output> 55 </output>