Mercurial > repos > iuc > hmmer_nhmmer

diff nhmmer.xml @ 9:54b92ae4f75b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author iuc
date Sun, 25 Feb 2024 18:34:55 +0000
parents 2ec5e1ad1da7
children
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--- a/nhmmer.xml	Mon Nov 06 20:23:30 2023 +0000
+++ b/nhmmer.xml	Sun Feb 25 18:34:55 2024 +0000
@@ -1,13 +1,12 @@
 <?xml version="1.0"?>
-<tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy1">
+<tool id="hmmer_nhmmer" name="nhmmer" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>search a DNA model or alignment against a DNA database (BLASTN-like)</description>
   <macros>
     <import>macros.xml</import>
   </macros>
   <expand macro="bio_tools"/>
   <expand macro="requirements"/>
-  <expand macro="stdio"/>
-  <command><![CDATA[
+  <command detect_errors="aggressive"><![CDATA[
 @ADDTHREADS@
 nhmmer
 
@@ -48,7 +47,7 @@
       <expand macro="oformat_test" />
       <param name="oformat" value="tblout,dfamtblout,aliscoresout"/>
       <expand macro="seed_test" />
-      <output name="output" file="nhmmer.out" lines_diff="16">
+      <output name="output" file="nhmmer.out" lines_diff="18">
         <expand macro="assert_out" tool="nhmmer"/>
       </output>
       <output name="tblout" file="nhmmer.out.tblout" lines_diff="12">