Mercurial > repos > iuc > hmmer_nhmmscan

comparison nhmmscan.xml @ 6:e07176c0925d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:12:36 +0000
parents 24a67ef302dd
children e7d281a290a6
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5:24a67ef302dd 6:e07176c0925d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hmmer_nhmmscan" name="nhmmscan" version="@TOOL_VERSION@+galaxy1"> 2 <tool id="hmmer_nhmmscan" name="nhmmscan" version="@TOOL_VERSION@+galaxy0">
3 <description>search DNA sequence(s) against a DNA profile database</description> 3 <description>search DNA sequence(s) against a DNA profile database</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
58 <output name="output" file="MADE1.nhmmscan_out" lines_diff="12"> 58 <output name="output" file="MADE1.nhmmscan_out" lines_diff="12">
59 <expand macro="assert_out" tool="nhmmscan"/> 59 <expand macro="assert_out" tool="nhmmscan"/>
60 </output> 60 </output>
61 <output name="tblout" file="MADE1.nhmmscan_out.tblout" lines_diff="10"> 61 <output name="tblout" file="MADE1.nhmmscan_out.tblout" lines_diff="10">
62 <!-- nhmmscan reports as hmmscan https://github.com/EddyRivasLab/hmmer/issues/190 --> 62 <!-- nhmmscan reports as hmmscan https://github.com/EddyRivasLab/hmmer/issues/190 -->
63 <expand macro="assert_tblout" tool="hmmscan"/> 63 <expand macro="assert_tblout" tool="nhmmscan"/>
64 </output> 64 </output>
65 <output name="dfamtblout" file="MADE1.nhmmscan_out.dfamtblout"> 65 <output name="dfamtblout" file="MADE1.nhmmscan_out.dfamtblout">
66 <assert_contents> 66 <assert_contents>
67 <has_line_matching expression="# hit scores"/> 67 <has_line_matching expression="# hit scores"/>
68 </assert_contents> 68 </assert_contents>