diff test-data/globins-45-align.sto @ 0:a6098dd0cb46 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author iuc
date Sat, 25 Jun 2016 15:07:32 -0400
parents
children 2d406da5d34e
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/globins-45-align.sto	Sat Jun 25 15:07:32 2016 -0400
@@ -0,0 +1,95 @@
+# STOCKHOLM 1.0
+
+MYG_ESCGI          .-VLSDAEWQLVLNIWAKVEADVAGHGQDILIRLFKGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVLTALGGILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSRHPGDFGADAQAAMNKALELFRKDIAAKYKelgfqg
+#=GR MYG_ESCGI  PP ..69****************************************************************************.99******************************************************************7******
+MYG_HORSE          g--LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKK-KGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGNFGADAQGAMTKALELFRNDIAAKYKelgfqg
+#=GR MYG_HORSE  PP 8..89***************************************************************************.99******************************************************************7******
+MYG_PROGU          g--LSDGEWQLVLNVWGKVEGDLSGHGQEVLIRLFKGHPETLEKFDKFKHLKAEDEMRASEELKKHGTTVLTALGGILKK-KGQHAAELAPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDIAAKYKelgfqg
+#=GR MYG_PROGU  PP 8..89***************************************************************************.99******************************************************************7******
+MYG_SAISC          g--LSDGEWQLVLNIWGKVEADIPSHGQEVLISLFKGHPETLEKFDKFKHLKSEDEMKASEELKKHGTTVLTALGGILKK-KGQHEAELKPLAQSHATKHKIPVKYLELISDAIVHVLQKKHPGDFGADAQGAMKKALELFRNDMAAKYKelgfqg
+#=GR MYG_SAISC  PP 8..89***************************************************************************.99******************************************************************7******
+MYG_LYCPI          g--LSDGEWQIVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVLTALGGILKK-KGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQNKHSGDFHADTEAAMKKALELFRNDIAAKYKelgfqg
+#=GR MYG_LYCPI  PP 8..89***************************************************************************.99******************************************************************7******
+MYG_MOUSE          g--LSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVLTALGTILKK-KGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFRNDIAAKYKelgfqg
+#=GR MYG_MOUSE  PP 8..89***************************************************************************.99******************************************************************7******
+MYG_MUSAN          v------DWEKVNSVWSAVESDLTAIGQNILLRLFEQYPESQNHFPKFKNKS-LGELKDTADIKAQADTVLSALGNIVKK-KGSHSQPVKALAATHITTHKIPPHYFTKITTIAVDVLSEMYPSEMNAQVQAAFSGAFKIICSDIEKEYKaanfqg
+#=GR MYG_MUSAN  PP 7......89***************************************9877.89*************************.99****************************************************************997******
+HBA_AILME          .-VLSPADKTNVKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTTAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASHHPAEFTPAVHASLDKFFSAVSTVLTSKYR......
+#=GR HBA_AILME  PP ..69********************************************.9**.....9***********************9.******************************************************************7......
+HBA_PROLO          .-VLSPADKANIKATWDKIGGHAGEYGGEALERTFASFPTTKTYFPHF-DLS-----PGSAQVKAHGKKVADALTLAVGHLD-DLPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHASLDKFFTSVSTVLTSKYR......
+#=GR HBA_PROLO  PP ..69********************************************.9**.....9***********************9.******************************************************************7......
+HBA_PAGLA          .-VLSSADKNNIKATWDKIGSHAGEYGAEALERTFISFPTTKTYFPHF-DLS-----HGSAQVKAHGKKVADALTLAVGHLE-DLPNALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPAEFTPAVHSALDKFFSAVSTVLTSKYR......
+#=GR HBA_PAGLA  PP ..69********************************************.***.....***********************98.9*****************************************************************7......
+HBA_MACFA          .-VLSPADKTNVKAAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
+#=GR HBA_MACFA  PP ..69********************************************.***.....************************9.******************************************************************7......
+HBA_MACSI          .-VLSPADKTNVKDAWGKVGGHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGKKVADALTLAVGHVD-DMPQALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
+#=GR HBA_MACSI  PP ..69********************************************.***.....************************9.******************************************************************7......
+HBA_PONPY          .-VLSPADKTNVKTAWGKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKDHGKKVADALTNAVAHVD-DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR......
+#=GR HBA_PONPY  PP ..69********************************************.***.....************************9.******************************************************************7......
+HBA2_GALCR         .-VLSPTDKSNVKAAWEKVGAHAGDYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSTQVKGHGKKVADALTNAVLHVD-DMPSALSALSDLHAHKLRVDPVNFKLLRHCLLVTLACHHPAEFTPAVHASLDKFMASVSTVLTSKYR......
+#=GR HBA2_GALCR PP ..69********************************************.***.....************************9.******************************************************************7......
+HBA_MESAU          .-VLSAKDKTNISEAWGKIGGHAGEYGAEALERMFFVYPTTKTYFPHF-DVS-----HGSAQVKGHGKKVADALTNAVGHLD-DLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLANHHPADFTPAVHASLDKFFASVSTVLTSKYR......
+#=GR HBA_MESAU  PP ..69********************************************.888.....************************9.******************************************************************7......
+HBA2_BOSMU         .-VLSAADKGNVKAAWGKVGGHAAEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGSAQVKGHGAKVAAALTKAVGHLD-DLPGALSELSDLHAHKLRVDPVNFKLLSHSLLVTLASHLPSDFTPAVHASLDKFLANVSTVLTSKYR......
+#=GR HBA2_BOSMU PP ..69********************************************.***.....************************9.******************************************************************7......
+HBA_ERIEU          .-VLSATDKANVKTFWGKLGGHGGEYGGEALDRMFQAHPTTKTYFPHF-DLN-----PGSAQVKGHGKKVADALTTAVNNLD-DVPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLALHHPADFTPAVHASLDKFLATVATVLTSKYR......
+#=GR HBA_ERIEU  PP ..69********************************************.999.....9***********************9.9*****************************************************************7......
+HBA_FRAPO          .-VLSAADKNNVKGIFGKISSHAEDYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQVKGHGKKVVAALIEAANHID-DIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGNVLTAKYR......
+#=GR HBA_FRAPO  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+HBA_PHACO          .-VLSAADKNNVKGIFTKIAGHAEEYGAEALERMFITYPSTKTYFPHF-DLS-----HGSAQIKGHGKKVVAALIEAVNHID-DITGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIHHPSALTPEVHASLDKFLCAVGTVLTAKYR......
+#=GR HBA_PHACO  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+HBA_TRIOC          .-VLSANDKTNVKTVFTKITGHAEDYGAETLERMFITYPPTKTYFPHF-DLH-----HGSAQIKAHGKKVVGALIEAVNHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGQCFLVVVAIHHPSVLTPEVHASLDKFLCAVGNVLSAKYR......
+#=GR HBA_TRIOC  PP ..69********************************************.999.....************************9.9*****************************************************************7......
+HBA_ANSSE          .-VLSAADKGNVKTVFGKIGGHAEEYGAETLQRMFQTFPQTKTYFPHF-DLQ-----PGSAQIKAHGKKVAAALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKFLGHCFLVVLAIHHPSLLTPEVHASMDKFLCAVATVLTAKYR......
+#=GR HBA_ANSSE  PP ..69********************************************.999.....9***********************9.9*****************************************************************7......
+HBA_COLLI          .-VLSANDKSNVKAVFAKIGGQAGDLGGEALERLFITYPQTKTYFPHF-DLS-----HGSAQIKGHGKKVAEALVEAANHID-DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKYR......
+#=GR HBA_COLLI  PP ..69********************************************.***.....************************9.9*****************************************************************7......
+HBAD_CHLME         m--LTADDKKLLTQLWEKVAGHQEEFGSEALQRMFLTYPQTKTYFPHF-DLH-----PGSEQVRGHGKKVAAALGNAVKSLD-NLSQALSELSNLHAYNLRVDPANFKLLAQCFQVVLATHLGKDYSPEMHAAFDKFLSAVAAVLAEKYR......
+#=GR HBAD_CHLME PP 6..89*******************************************.999.....9************************.******************************************************************7......
+HBAD_PASMO         m--LTAEDKKLIQQIWGKLGGAEEEIGADALWRMFHSYPSTKTYFPHF-DLS-----QGSDQIRGHGKKVVAALSNAIKNLD-NLSQALSELSNLHAYNLRVDPVNFKFLSQCLQVSLATRLGKEYSPEVHSAVDKFMSAVASVLAEKYR......
+#=GR HBAD_PASMO PP 6..99*******************************************.9**.....9************************.******************************************************************7......
+HBAZ_HORSE         s--LTKAERTMVVSIWGKISMQADAVGTEALQRLFSSYPQTKTYFPHF-DLH-----EGSPQLRAHGSKVAAAVGDAVKSID-NVAGALAKLSELHAYILRVDPVNFKFLSHCLLVTLASRLPADFTADAHAAWDKFLSIVSSVLTEKYR......
+#=GR HBAZ_HORSE PP 6..89*******************************************.999.....9************************.******************************************************************7......
+HBA4_SALIR         s--LSAKDKANVKAIWGKILPKSDEIGEQALSRMLVVYPQTKAYFSHWASVA-----PGSAPVKKHGITIMNQIDDCVGHMD-DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLALALAEKYR......
+#=GR HBA4_SALIR PP 6..9********************************************7776.....9************************.9*****************************************************************7......
+HBB_ORNAN          .VHLSGGEKSAVTNLWGKV--NINELGGEALGRLLVVYPWTQRFFEAFGDLSSAGAVMGNPKVKAHGAKVLTSFGDALKNLD-DLKGTFAKLSELHCDKLHVDPENFNRLGNVLIVVLARHFSKDFSPEVQAAWQKLVSGVAHALGHKYH......
+#=GR HBB_ORNAN  PP .69****************..************************************************************9.******************************************************************7......
+HBB_TACAC          .VHLSGSEKTAVTNLWGHV--NVNELGGEALGRLLVVYPWTQRFFESFGDLSSADAVMGNAKVKAHGAKVLTSFGDALKNLD-NLKGTFAKLSELHCDKLHVDPENFNRLGNVLVVVLARHFSKEFTPEAQAAWQKLVSGVSHALAHKYH......
+#=GR HBB_TACAC  PP .69****************..*************************************************************.******************************************************************7......
+HBE_PONPY          .VHFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMD-NLKTTFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH......
+#=GR HBE_PONPY  PP .5789**************..*************************************************************.******************************************************************7......
+HBB_SPECI          .VHLSDGEKNAISTAWGKV--HAAEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLD-NLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALAHKYH......
+#=GR HBB_SPECI  PP .69****************..99***********************************************************.******************************************************************7......
+HBB_SPETO          .VHLTDGEKNAISTAWGKV--NAAEIGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNAKVKAHGKKVIDSFSNGLKHLD-NLKGTFASLSELHCDKLHVDPENFKLLGNMIVIVMAHHLGKDFTPEAQAAFQKVVAGVANALSHKYH......
+#=GR HBB_SPETO  PP .69****************..99***********************************************************.******************************************************************7......
+HBB_EQUHE          v-QLSGEEKAAVLALWDKV--NEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPAAVMGNPKVKAHGKKVLHSFGEGVHHLD-NLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH......
+#=GR HBB_EQUHE  PP 5.79***************..99***********************************************************.******************************************************************7......
+HBB_SUNMU          .VHLSGEEKACVTGLWGKV--NEDEVGAEALGRLLVVYPWTQRFFDSFGDLSSASAVMGNPKVKAHGKKVLHSLGEGVANLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVVVLASKFGKEFTPPVQAAFQKVVAGVANALAHKYH......
+#=GR HBB_SUNMU  PP .69****************..99***********************************************************.******************************************************************7......
+HBB_CALAR          .VHLTGEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMNNPKVKAHGKKVLGAFSDGLTHLD-NLKGTFAHLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPVVQAAYQKVVAGVANALAHKYH......
+#=GR HBB_CALAR  PP .689***************..*************************************************************.******************************************************************7......
+HBB_MANSP          .VHLTPEEKTAVTTLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSPDAVMGNPKVKAHGKKVLGAFSDGLNHLD-NLKGTFAQLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
+#=GR HBB_MANSP  PP .69****************..*************************************************************.******************************************************************7......
+HBB_URSMA          .VHLTGEEKSLVTGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFDSFGDLSSADAIMNNPKVKAHGKKVLNSFSDGLKNLD-NLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
+#=GR HBB_URSMA  PP .689***************..*************************************************************.******************************************************************7......
+HBB_RABIT          .VHLSSEEKSAVTALWGKV--NVEEVGGEALGRLLVVYPWTQRFFESFGDLSSANAVMNNPKVKAHGKKVLAAFSEGLSHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVIVLSHHFGKEFTPQVQAAYQKVVAGVANALAHKYH......
+#=GR HBB_RABIT  PP .69****************..*************************************************************.******************************************************************7......
+HBB_TUPGL          .VHLSGEEKAAVTGLWGKV--DLEKVGGQSLGSLLIVYPWTQRFFDSFGDLSSPSAVMSNPKVKAHGKKVLTSFSDGLNHLD-NLKGTFAKLSELHCDKLHVDPENFRLLGNVLVRVLACNFGPEFTPQVQAAFQKVVAGVANALAHKYH......
+#=GR HBB_TUPGL  PP .69****************..*************************************************************.******************************************************************7......
+HBB_TRIIN          .VHLTPEEKALVIGLWAKV--NVKEYGGEALGRLLVVYPWTQRFFEHFGDLSSASAIMNNPKVKAHGEKVFTSFGDGLKHLE-DLKGAFAELSELHCDKLHVDPENFRLLGNVLVCVLARHFGKEFSPEAQAAYQKVVAGVANALAHKYH......
+#=GR HBB_TRIIN  PP .69****************..***********************************************************98.9*****************************************************************7......
+HBB_COLLI          v-HWSAEEKQLITSIWGKV--NVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLD-NIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAHALARKYH......
+#=GR HBB_COLLI  PP 5.779**************..*************************************************************.******************************************************************7......
+HBB_LARRI          v-HWSAEEKQLITGLWGKV--NVADCGAEALARLLIVYPWTQRFFASFGNLSSPTAINGNPMVRAHGKKVLTSFGEAVKNLD-NIKNTFAQLSELHCDKLHVDPENFRLLGDILIIVLAAHFAKDFTPDSQAAWQKLVRVVAHALARKYH......
+#=GR HBB_LARRI  PP 5.779**************..*************************************************************.******************************************************************7......
+HBB1_VAREX         v-HWTAEEKQLICSLWGKI--DVGLIGGETLAGLLVIYPWTQRQFSHFGNLSSPTAIAGNPRVKAHGKKVLTSFGDAIKNLD-NIKDTFAKLSELHCDKLHVDPTNFKLLGNVLVIVLADHHGKEFTPAHHAAYQKLVNVVSHSLARRYH......
+#=GR HBB1_VAREX PP 6.6799*************..*************************************************************.******************************************************************7......
+HBB2_XENTR         v-HWTAEEKATIASVWGKV--DIEQDGHDALSRLLVVYPWTQRYFSSFGNLSNVSAVSGNVKVKAHGNKVLSAVGSAIQHLD-DVKSHLKGLSKSHAEDLHVDPENFKRLADVLVIVLAAKLGSAFTPQVQAVWEKLNATLVAALSHGY-f.....
+#=GR HBB2_XENTR PP 6.6799*************..************************************************************9.9*************************************************************9988.9.....
+HBBL_RANCA         v-HWTAEEKAVINSVWQKV--DVEQDGHEALTRLFIVYPWTQRYFSTFGDLSSPAAIAGNPKVHAHGKKILGAIDNAIHNLD-DVKGTLHDLSEEHANELHVDPENFRRLGEVLIVVLGAKLGKAFSPQVQHVWEKFIAVLVDALSHSYH......
+#=GR HBBL_RANCA PP 6.6799*************..************************************************************9.9*****************************************************************7......
+HBB2_TRICR         .VHLTAEDRKEIAAILGKV--NVDSLGGQCLARLIVVNPWSRRYFHDFGDLSSCDAICRNPKVLAHGAKVMRSIVEATKHLD-NLREYYADLSVTHSLKFYVDPENFKLFSGIVIVCLALTLQTDFSCHKQLAFEKLMKGVSHALGHGY-......
+#=GR HBB2_TRICR PP .69****************..*************************************************************.**************************************************************9988.......
+#=GC PP_cons       .679*****************************************************************************99******************************************************************7......
+#=GC RF            .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......
+//