Mercurial > repos > iuc > hmmer_nhmmscan

diff nhmmscan.xml @ 7:e7d281a290a6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 061757dd7b3bfe66b7738fd54bd6c5e135d9afe8
author iuc
date Mon, 06 Nov 2023 20:24:33 +0000
parents e07176c0925d
children fb1305d0d1c6
line wrap: on
line diff
--- a/nhmmscan.xml	Wed Jul 21 14:12:36 2021 +0000
+++ b/nhmmscan.xml	Mon Nov 06 20:24:33 2023 +0000
@@ -1,9 +1,10 @@
 <?xml version="1.0"?>
-<tool id="hmmer_nhmmscan" name="nhmmscan" version="@TOOL_VERSION@+galaxy0">
+<tool id="hmmer_nhmmscan" name="nhmmscan" version="@TOOL_VERSION@+galaxy1">
   <description>search DNA sequence(s) against a DNA profile database</description>
   <macros>
     <import>macros.xml</import>
   </macros>
+  <expand macro="bio_tools"/>
   <expand macro="requirements"/>
   <expand macro="stdio"/>
   <command><![CDATA[
@@ -12,8 +13,7 @@
 nhmmscan
 
 @OFORMAT_WITH_OPTS@
-@THRESHOLDS_NODOM@
-@CUT@
+@THRESHOLDS@
 @ACCEL_HEUR@
 --B1 $B1
 --B2 $B2
@@ -33,8 +33,7 @@
     <!-- todo use Galaxy features like data libraries/data tables/??? -->
     <param name="seqfile" type="data" format="fasta" label="Sequence file"/>
     <expand macro="oformat_with_opts_dfam_alisc"/>
-    <expand macro="thresholds_nodom"/>
-    <expand macro="cut"/>
+    <expand macro="thresholds_cut_xml"/>
     <expand macro="accel_heur_xml"/>
 
     <param argument="--B1" type="integer" value="110" label="window length for biased-composition modifier (MSV)" />