Mercurial > repos > iuc > hmmer_nhmmscan
view test-data/MADE1.nhmmscan_out.tblout @ 8:fb1305d0d1c6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2024 18:32:37 +0000 |
| parents | e07176c0925d |
| children |
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# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to modlen strand E-value score bias description of target #------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- MADE1 DF0000629.2 humanchr1/239220001-239550000 - 4 80 302390 302466 302387 302466 80 + 4e-11 41.3 7.5 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 43 174456 174498 174456 174518 80 + 1.9e-08 32.8 8.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 humanchr1/239220001-239550000 - 1 78 302466 302389 302466 302387 80 - 6.3e-08 31.0 6.7 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 humanchr1/239220001-239550000 - 43 80 174493 174456 174513 174456 80 - 4.9e-06 25.0 7.0 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 humanchr1/239220001-239550000 - 41 71 304073 304103 304053 304109 80 + 2.2 6.9 7.2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: nhmmscan # Version: 3.3.2 (Nov 2020) # Pipeline mode: SCAN # Query file: /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat # Target file: localref.hmm # Option settings: nhmmscan --tblout /tmp/tmp2vk0_a8v/files/7/0/4/dataset_70487df9-4948-42c0-a250-638bcc64487a.dat --dfamtblout /tmp/tmp2vk0_a8v/files/8/0/f/dataset_80fdcb47-0041-4a2c-bc0a-4820ac3c27d0.dat --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --B1 110 --B2 240 --B3 1000 --cpu 0 localref.hmm /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat # Current dir: /tmp/tmp2vk0_a8v/job_working_directory/000/6/working # Date: Fri Jul 16 11:22:43 2021 # [ok]