Mercurial > repos > iuc > hmmer_phmmer

comparison test-data/nhmmer.out @ 7:8a791afd99fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:16:08 +0000
parents c1de05e20868
children
comparison
equal deleted inserted replaced
6:8267b6ad0b45 7:8a791afd99fb
1 # nhmmer :: search a DNA model, alignment, or sequence against a DNA database 1 # nhmmer :: search a DNA model, alignment, or sequence against a DNA database
2 # HMMER 3.3 (Nov 2019); http://hmmer.org/ 2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/
3 # Copyright (C) 2019 Howard Hughes Medical Institute. 3 # Copyright (C) 2020 Howard Hughes Medical Institute.
4 # Freely distributed under the BSD open source license. 4 # Freely distributed under the BSD open source license.
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query file: /tmp/tmpqydies2m/files/c/4/e/dataset_c4e67f40-cb86-438e-8bc0-6020ada9fc86.dat 6 # query file: /tmp/tmpzdnl83p_/files/9/7/3/dataset_973ac44a-c86b-42ed-b8fe-f747795642c7.dat
7 # target sequence database: /tmp/tmpqydies2m/files/a/1/b/dataset_a1b4364c-0e9a-4709-b4ef-ab7e5661d9e9.dat 7 # target sequence database: /tmp/tmpzdnl83p_/files/6/5/6/dataset_65678542-5e91-4d72-9409-b7213a529ca0.dat
8 # hits tabular output: /tmp/tmpqydies2m/files/b/d/d/dataset_bdd87d82-1ce1-4051-8d5f-f7251bf7fd18.dat
9 # hits output in Dfam format: /tmp/tmpqydies2m/files/d/8/e/dataset_d8ee0d50-d171-4e8a-9c7d-1cbd4394296f.dat
10 # alignment scores output: /tmp/tmpqydies2m/files/5/1/3/dataset_5139892f-c507-40c4-b43d-f73023c634f4.dat
11 # max ASCII text line length: unlimited 8 # max ASCII text line length: unlimited
12 # SSV filter P threshold: <= 0.02 9 # SSV filter P threshold: <= 0.02
13 # Vit filter P threshold: <= 0.001 10 # Vit filter P threshold: <= 0.001
14 # Fwd filter P threshold: <= 1e-05 11 # Fwd filter P threshold: <= 1e-05
15 # input query is asserted as: DNA 12 # input query is asserted as: DNA
16 # random number seed set to: 4 13 # random number seed set to: 4
17 # number of worker threads: 1 14 # number of worker threads: 0
18 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 15 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
19 16
20 Query: MADE1 [M=80] 17 Query: MADE1 [M=80]
21 Accession: DF0000629.2 18 Accession: DF0000629.2
22 Description: MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 19 Description: MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
106 Residues passing SSV filter: 60770 (0.0921); expected (0.02) 103 Residues passing SSV filter: 60770 (0.0921); expected (0.02)
107 Residues passing bias filter: 35792 (0.0542); expected (0.02) 104 Residues passing bias filter: 35792 (0.0542); expected (0.02)
108 Residues passing Vit filter: 1612 (0.00244); expected (0.001) 105 Residues passing Vit filter: 1612 (0.00244); expected (0.001)
109 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05) 106 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05)
110 Total number of hits: 5 (0.000405) 107 Total number of hits: 5 (0.000405)
111 # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.05 108 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
112 # Mc/sec: 1031.54 109 # Mc/sec: 2197.54
113 // 110 //
114 [ok] 111 [ok]